RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 DIXDC1Q155Q3 683 aa11.6□□□□□ -0.55
PCDH9-204ENST00000544246 BAG1Q99933 345 aaPredicted RBP11.6□□□□□ -0.55
PCDH9-204ENST00000544246 TRIM6Q9C030 488 aaPredicted RBP11.6□□□□□ -0.55
PCDH9-204ENST00000544246 CLEC11AQ9Y240 323 aa11.6□□□□□ -0.55
PCDH9-204ENST00000544246 DTHD1Q6ZMT9 781 aa11.6□□□□□ -0.55
PCDH9-204ENST00000544246 LRRC2Q9BYS8 371 aa11.6□□□□□ -0.55
PCDH9-204ENST00000544246 CTNND2Q9UQB3 1225 aa11.6□□□□□ -0.55
PCDH9-204ENST00000544246 CALUO43852 315 aaPredicted RBP11.6□□□□□ -0.55
PCDH9-204ENST00000544246 CCT6AP40227 531 aaKnown RBP11.6□□□□□ -0.55
PCDH9-204ENST00000544246 NAA16Q6N069 864 aaPredicted RBP11.6□□□□□ -0.55
PCDH9-204ENST00000544246 SV2BQ7L1I2 683 aa11.6□□□□□ -0.55
PCDH9-204ENST00000544246 ZNF804AQ7Z570 1209 aa11.6□□□□□ -0.55
PCDH9-204ENST00000544246 CLSTN2Q9H4D0 955 aa11.6□□□□□ -0.55
PCDH9-204ENST00000544246 MAGEB6P1A0A0J9YX57 407 aa11.59□□□□□ -0.55
PCDH9-204ENST00000544246 F8W031 263 aaPredicted RBP11.59□□□□□ -0.55
PCDH9-204ENST00000544246 RUFY4Q6ZNE9 571 aa11.59□□□□□ -0.55
PCDH9-204ENST00000544246 LRRC59Q96AG4 307 aaKnown RBP11.59□□□□□ -0.55
PCDH9-204ENST00000544246 NOX5Q96PH1 765 aa11.59□□□□□ -0.55
PCDH9-204ENST00000544246 NOC4LQ9BVI4 516 aaKnown RBP11.59□□□□□ -0.55
PCDH9-204ENST00000544246 TRAPPC8Q9Y2L5 1435 aa11.59□□□□□ -0.55
PCDH9-204ENST00000544246 MCMDC2Q4G0Z9 681 aa11.59□□□□□ -0.55
PCDH9-204ENST00000544246 NOC2LQ9Y3T9 749 aaKnown RBP11.59□□□□□ -0.55
PCDH9-204ENST00000544246 CFAP74Q9C0B2 1584 aa11.59□□□□□ -0.55
PCDH9-204ENST00000544246 SYCP2Q9BX26 1530 aa11.59□□□□□ -0.55
PCDH9-204ENST00000544246 GNA11P29992 359 aa11.59□□□□□ -0.55
PCDH9-204ENST00000544246 RFX1P22670 979 aa11.59□□□□□ -0.55
PCDH9-204ENST00000544246 WHAMMP3Q1A5X7 153 aa11.59□□□□□ -0.55
PCDH9-204ENST00000544246 OGFOD1Q8N543 542 aa11.59□□□□□ -0.55
PCDH9-204ENST00000544246 RBM28Q9NW13 759 aaKnown RBP11.59□□□□□ -0.55
PCDH9-204ENST00000544246 EXOC5O00471 708 aa11.59□□□□□ -0.55
PCDH9-204ENST00000544246 NBPF5PQ86XG9 351 aaPredicted RBP11.59□□□□□ -0.55
PCDH9-204ENST00000544246 ATP5J2-PTCD1G3V325 749 aa11.58□□□□□ -0.55
PCDH9-204ENST00000544246 SLC12A2P55011 1212 aa11.58□□□□□ -0.55
PCDH9-204ENST00000544246 MUM1Q2TAK8 710 aa11.58□□□□□ -0.55
PCDH9-204ENST00000544246 CYP26C1Q6V0L0 522 aa11.58□□□□□ -0.55
PCDH9-204ENST00000544246 WAPLQ7Z5K2 1190 aa11.58□□□□□ -0.55
PCDH9-204ENST00000544246 C19orf44Q9H6X5 657 aa11.58□□□□□ -0.55
PCDH9-204ENST00000544246 DISP1Q96F81 1524 aa11.58□□□□□ -0.56
PCDH9-204ENST00000544246 HARSP12081 509 aaKnown RBP11.58□□□□□ -0.56
PCDH9-204ENST00000544246 RILPQ96NA2 401 aa11.58□□□□□ -0.56
PCDH9-204ENST00000544246 PPME1Q9Y570 386 aa11.58□□□□□ -0.56
PCDH9-204ENST00000544246 KIAA1107Q9UPP5 1409 aa11.58□□□□□ -0.56
PCDH9-204ENST00000544246 NPHP3Q7Z494 1330 aa11.58□□□□□ -0.56
PCDH9-204ENST00000544246 HGSO14964 777 aaPredicted RBP11.58□□□□□ -0.56
PCDH9-204ENST00000544246 SMTNP53814 917 aa11.58□□□□□ -0.56
PCDH9-204ENST00000544246 RBBP5Q15291 538 aaKnown RBP11.58□□□□□ -0.56
PCDH9-204ENST00000544246 PNMA8AQ86V59 439 aaPredicted RBP11.58□□□□□ -0.56
PCDH9-204ENST00000544246 LRRC43Q8N309 656 aa11.58□□□□□ -0.56
PCDH9-204ENST00000544246 GNAT2P19087 354 aa11.58□□□□□ -0.56
PCDH9-204ENST00000544246 MAN1A1P33908 653 aa11.58□□□□□ -0.56
PCDH9-204ENST00000544246 RASSF2P50749 326 aa11.58□□□□□ -0.56
PCDH9-204ENST00000544246 DNM1Q05193 864 aaKnown RBP11.58□□□□□ -0.56
PCDH9-204ENST00000544246 MTMR3Q13615 1198 aa11.58□□□□□ -0.56
PCDH9-204ENST00000544246 Q9H521 79 aa11.58□□□□□ -0.56
PCDH9-204ENST00000544246 FAN1Q9Y2M0 1017 aa11.58□□□□□ -0.56
PCDH9-204ENST00000544246 RBM8AQ9Y5S9 174 aaKnown RBP11.58□□□□□ -0.56
PCDH9-204ENST00000544246 NAIPQ13075 1403 aa11.58□□□□□ -0.56
PCDH9-204ENST00000544246 ERO1AQ96HE7 468 aa11.58□□□□□ -0.56
PCDH9-204ENST00000544246 ASIC3Q9UHC3 531 aa11.58□□□□□ -0.56
PCDH9-204ENST00000544246 TTF2Q9UNY4 1162 aaKnown RBP11.58□□□□□ -0.56
PCDH9-204ENST00000544246 EXOC7Q9UPT5 735 aa11.58□□□□□ -0.56
PCDH9-204ENST00000544246 RPS6KA2Q15349 733 aa11.57□□□□□ -0.56
PCDH9-204ENST00000544246 UBE3BQ7Z3V4 1068 aa11.57□□□□□ -0.56
PCDH9-204ENST00000544246 GPATCH8Q9UKJ3 1502 aaKnown RBP11.57□□□□□ -0.56
PCDH9-204ENST00000544246 SPECC1L-ADORA2AF8WAN1 911 aa11.57□□□□□ -0.56
PCDH9-204ENST00000544246 CDR2Q01850 454 aa11.57□□□□□ -0.56
PCDH9-204ENST00000544246 STRN3Q13033 797 aa11.57□□□□□ -0.56
PCDH9-204ENST00000544246 ANKRD20A3Q5VUR7 823 aa11.57□□□□□ -0.56
PCDH9-204ENST00000544246 TSHZ3Q63HK5 1081 aa11.57□□□□□ -0.56
PCDH9-204ENST00000544246 CASC4Q6P4E1 433 aa11.57□□□□□ -0.56
PCDH9-204ENST00000544246 IQUBQ8NA54 791 aa11.57□□□□□ -0.56
PCDH9-204ENST00000544246 RBSNQ9H1K0 784 aa11.57□□□□□ -0.56
PCDH9-204ENST00000544246 TRAF5O00463 557 aa11.57□□□□□ -0.56
PCDH9-204ENST00000544246 CXorf38Q8TB03 319 aa11.57□□□□□ -0.56
PCDH9-204ENST00000544246 ATP2A3Q93084 1043 aa11.57□□□□□ -0.56
PCDH9-204ENST00000544246 PLIN2Q99541 437 aa11.57□□□□□ -0.56
PCDH9-204ENST00000544246 NACA2Q9H009 215 aa11.57□□□□□ -0.56
PCDH9-204ENST00000544246 SP4Q02446 784 aa11.57□□□□□ -0.56
PCDH9-204ENST00000544246 ZBTB17Q13105 803 aa11.57□□□□□ -0.56
PCDH9-204ENST00000544246 DBN1Q16643 649 aa11.57□□□□□ -0.56
PCDH9-204ENST00000544246 PHLDB3Q6NSJ2 640 aa11.57□□□□□ -0.56
PCDH9-204ENST00000544246 CABS1Q96KC9 395 aa11.57□□□□□ -0.56
PCDH9-204ENST00000544246 COG7P83436 770 aa11.57□□□□□ -0.56
PCDH9-204ENST00000544246 BRAPQ7Z569 592 aa11.57□□□□□ -0.56
PCDH9-204ENST00000544246 PDCD7Q8N8D1 485 aaKnown RBP11.57□□□□□ -0.56
PCDH9-204ENST00000544246 OPHN1O60890 802 aa11.56□□□□□ -0.56
PCDH9-204ENST00000544246 KRT15P19012 456 aa11.56□□□□□ -0.56
PCDH9-204ENST00000544246 XAB2Q9HCS7 855 aaKnown RBP11.56□□□□□ -0.56
PCDH9-204ENST00000544246 U2AF2P26368 475 aaKnown RBP eCLIP11.56□□□□□ -0.56
PCDH9-204ENST00000544246 PPP4R1Q8TF05 950 aa11.56□□□□□ -0.56
PCDH9-204ENST00000544246 VEZTQ9HBM0 779 aa11.56□□□□□ -0.56
PCDH9-204ENST00000544246 TROVE2P10155 538 aaKnown RBP eCLIP11.56□□□□□ -0.56
PCDH9-204ENST00000544246 PPFIA1Q13136 1202 aa11.56□□□□□ -0.56
PCDH9-204ENST00000544246 SECISBP2LQ93073 1101 aaKnown RBP11.56□□□□□ -0.56
PCDH9-204ENST00000544246 TBC1D32Q96NH3 1257 aa11.56□□□□□ -0.56
PCDH9-204ENST00000544246 DNAJC8O75937 253 aaPredicted RBP11.56□□□□□ -0.56
PCDH9-204ENST00000544246 RNASE9P60153 205 aaKnown RBP11.56□□□□□ -0.56
PCDH9-204ENST00000544246 TRIM31Q9BZY9 425 aa11.56□□□□□ -0.56
PCDH9-204ENST00000544246 FAF1Q9UNN5 650 aaPredicted RBP11.56□□□□□ -0.56
PCDH9-204ENST00000544246 CCDC169A6NNP5 214 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms