RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 NOL10Q9BSC4 688 aaKnown RBP16.14■□□□□ 0.17
RTN3-213ENST00000543552 ATRNL1Q5VV63 1379 aa16.13■□□□□ 0.17
RTN3-213ENST00000543552 GPR75-ASB3A0A0A6YYF3 556 aa16.13■□□□□ 0.17
RTN3-213ENST00000543552 NPM3O75607 178 aaKnown RBP16.13■□□□□ 0.17
RTN3-213ENST00000543552 PICALMQ13492 652 aa16.13■□□□□ 0.17
RTN3-213ENST00000543552 POLA2Q14181 598 aa16.13■□□□□ 0.17
RTN3-213ENST00000543552 CCDC158Q5M9N0 1113 aa16.13■□□□□ 0.17
RTN3-213ENST00000543552 NBPF11Q86T75 865 aa16.13■□□□□ 0.17
RTN3-213ENST00000543552 SCYL3Q8IZE3 742 aa16.13■□□□□ 0.17
RTN3-213ENST00000543552 SSH3Q8TE77 659 aa16.13■□□□□ 0.17
RTN3-213ENST00000543552 ARMC5Q96C12 935 aa16.13■□□□□ 0.17
RTN3-213ENST00000543552 RAI14Q9P0K7 980 aa16.13■□□□□ 0.17
RTN3-213ENST00000543552 ZBED9Q6R2W3 1325 aa16.13■□□□□ 0.17
RTN3-213ENST00000543552 CXCL11O14625 94 aa16.12■□□□□ 0.17
RTN3-213ENST00000543552 IGSF3O75054 1194 aa16.12■□□□□ 0.17
RTN3-213ENST00000543552 ATP8B2P98198 1209 aa16.12■□□□□ 0.17
RTN3-213ENST00000543552 TTC39AQ5SRH9 613 aa16.12■□□□□ 0.17
RTN3-213ENST00000543552 ZFPM1Q8IX07 1006 aa16.12■□□□□ 0.17
RTN3-213ENST00000543552 PARK7Q99497 189 aaKnown RBP16.12■□□□□ 0.17
RTN3-213ENST00000543552 LRP2BPQ9P2M1 347 aa16.12■□□□□ 0.17
RTN3-213ENST00000543552 COL2A1P02458 1487 aaPredicted RBP16.11■□□□□ 0.17
RTN3-213ENST00000543552 PDHXO00330 501 aa16.11■□□□□ 0.17
RTN3-213ENST00000543552 CTNND1O60716 968 aaKnown RBP16.11■□□□□ 0.17
RTN3-213ENST00000543552 SURF6O75683 361 aaKnown RBP16.11■□□□□ 0.17
RTN3-213ENST00000543552 PRMT2P55345 433 aa16.11■□□□□ 0.17
RTN3-213ENST00000543552 LACTBP83111 547 aaPredicted RBP16.11■□□□□ 0.17
RTN3-213ENST00000543552 MAP3K10Q02779 954 aa16.11■□□□□ 0.17
RTN3-213ENST00000543552 SLC9C1Q4G0N8 1177 aa16.11■□□□□ 0.17
RTN3-213ENST00000543552 TNNI3KQ59H18 835 aa16.11■□□□□ 0.17
RTN3-213ENST00000543552 FASTKD5Q7L8L6 764 aaKnown RBP16.11■□□□□ 0.17
RTN3-213ENST00000543552 NSUN4Q96CB9 384 aaKnown RBP16.11■□□□□ 0.17
RTN3-213ENST00000543552 FPGT-TNNI3KV9GXZ4 949 aa16.11■□□□□ 0.17
RTN3-213ENST00000543552 BRCA2P51587 3418 aa16.1■□□□□ 0.17
RTN3-213ENST00000543552 PHF20L1A8MW92 1017 aa16.1■□□□□ 0.17
RTN3-213ENST00000543552 BAG3O95817 575 aa16.1■□□□□ 0.17
RTN3-213ENST00000543552 MS4A1P11836 297 aa16.1■□□□□ 0.17
RTN3-213ENST00000543552 PLCG2P16885 1265 aa16.1■□□□□ 0.17
RTN3-213ENST00000543552 MCAMP43121 646 aa16.1■□□□□ 0.17
RTN3-213ENST00000543552 PRPF38BQ5VTL8 546 aaKnown RBP16.1■□□□□ 0.17
RTN3-213ENST00000543552 PI16Q6UXB8 463 aa16.1■□□□□ 0.17
RTN3-213ENST00000543552 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.1■□□□□ 0.17
RTN3-213ENST00000543552 MAST2Q6P0Q8 1798 aa16.1■□□□□ 0.17
RTN3-213ENST00000543552 RBBP6Q7Z6E9 1792 aaKnown RBP16.1■□□□□ 0.17
RTN3-213ENST00000543552 DDTLA6NHG4 134 aaPredicted RBP16.09■□□□□ 0.17
RTN3-213ENST00000543552 TBC1D12O60347 775 aa16.09■□□□□ 0.17
RTN3-213ENST00000543552 PTPRAP18433 802 aa16.09■□□□□ 0.17
RTN3-213ENST00000543552 RHBDL3P58872 404 aa16.09■□□□□ 0.17
RTN3-213ENST00000543552 TBC1D9Q6ZT07 1266 aa16.09■□□□□ 0.17
RTN3-213ENST00000543552 SH3BP5LQ7L8J4 393 aa16.09■□□□□ 0.17
RTN3-213ENST00000543552 ZNF512BQ96KM6 892 aaPredicted RBP16.09■□□□□ 0.17
RTN3-213ENST00000543552 TMEM106CQ9BVX2 250 aa16.09■□□□□ 0.17
RTN3-213ENST00000543552 DDX4Q9NQI0 724 aaKnown RBP16.09■□□□□ 0.17
RTN3-213ENST00000543552 ZHX2Q9Y6X8 837 aa16.09■□□□□ 0.17
RTN3-213ENST00000543552 DOCK1Q14185 1865 aa16.08■□□□□ 0.17
RTN3-213ENST00000543552 A0A0G2JLL6 359 aaPredicted RBP16.08■□□□□ 0.16
RTN3-213ENST00000543552 HOXD10P28358 340 aa16.08■□□□□ 0.16
RTN3-213ENST00000543552 NAA16Q6N069 864 aaPredicted RBP16.08■□□□□ 0.16
RTN3-213ENST00000543552 C17orf99Q6UX52 265 aa16.08■□□□□ 0.16
RTN3-213ENST00000543552 PRRT2Q7Z6L0 340 aaPredicted RBP16.08■□□□□ 0.16
RTN3-213ENST00000543552 ERC1Q8IUD2 1116 aa16.08■□□□□ 0.16
RTN3-213ENST00000543552 TEX11Q8IYF3 940 aa16.08■□□□□ 0.16
RTN3-213ENST00000543552 ZNF384Q8TF68 577 aa16.08■□□□□ 0.16
RTN3-213ENST00000543552 TBC1D2Q9BYX2 928 aa16.08■□□□□ 0.16
RTN3-213ENST00000543552 C1orf115Q9H7X2 142 aa16.08■□□□□ 0.16
RTN3-213ENST00000543552 SLC45A1Q9Y2W3 748 aa16.08■□□□□ 0.16
RTN3-213ENST00000543552 NOP58Q9Y2X3 529 aaKnown RBP16.08■□□□□ 0.16
RTN3-213ENST00000543552 PTCH2Q9Y6C5 1203 aa16.08■□□□□ 0.16
RTN3-213ENST00000543552 MKI67P46013 3256 aaKnown RBP16.07■□□□□ 0.16
RTN3-213ENST00000543552 ZBTB7BO15156 539 aaPredicted RBP16.07■□□□□ 0.16
RTN3-213ENST00000543552 ZNF333Q96JL9 665 aa16.07■□□□□ 0.16
RTN3-213ENST00000543552 DBNDD2Q9BQY9 259 aa16.07■□□□□ 0.16
RTN3-213ENST00000543552 OSBPL5Q9H0X9 879 aaPredicted RBP16.07■□□□□ 0.16
RTN3-213ENST00000543552 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.07■□□□□ 0.16
RTN3-213ENST00000543552 CPA4Q9UI42 421 aa16.07■□□□□ 0.16
RTN3-213ENST00000543552 ADGRA2Q96PE1 1338 aa16.06■□□□□ 0.16
RTN3-213ENST00000543552 RLBP1P12271 317 aa16.06■□□□□ 0.16
RTN3-213ENST00000543552 CAP1Q01518 475 aa16.06■□□□□ 0.16
RTN3-213ENST00000543552 MOGSQ13724 837 aa16.06■□□□□ 0.16
RTN3-213ENST00000543552 GADL1Q6ZQY3 521 aa16.06■□□□□ 0.16
RTN3-213ENST00000543552 CERS3Q8IU89 383 aa16.06■□□□□ 0.16
RTN3-213ENST00000543552 DHX36Q9H2U1 1008 aaKnown RBP16.06■□□□□ 0.16
RTN3-213ENST00000543552 HERC5Q9UII4 1024 aaKnown RBP16.06■□□□□ 0.16
RTN3-213ENST00000543552 AFG3L2Q9Y4W6 797 aa16.06■□□□□ 0.16
RTN3-213ENST00000543552 POTEFA5A3E0 1075 aa16.05■□□□□ 0.16
RTN3-213ENST00000543552 FMNL1O95466 1100 aaPredicted RBP16.05■□□□□ 0.16
RTN3-213ENST00000543552 PSMC4P43686 418 aa16.05■□□□□ 0.16
RTN3-213ENST00000543552 HSP90AB4PQ58FF6 505 aa16.05■□□□□ 0.16
RTN3-213ENST00000543552 TMED8Q6PL24 325 aaPredicted RBP16.05■□□□□ 0.16
RTN3-213ENST00000543552 ARHGAP39Q9C0H5 1083 aa16.05■□□□□ 0.16
RTN3-213ENST00000543552 SNRKQ9NRH2 765 aa16.05■□□□□ 0.16
RTN3-213ENST00000543552 KIAA0100Q14667 2235 aaKnown RBP16.04■□□□□ 0.16
RTN3-213ENST00000543552 TRIM75PA6NK02 468 aa16.04■□□□□ 0.16
RTN3-213ENST00000543552 FCGRTP55899 365 aa16.04■□□□□ 0.16
RTN3-213ENST00000543552 SLC4A8Q2Y0W8 1093 aa16.04■□□□□ 0.16
RTN3-213ENST00000543552 GPAT2Q6NUI2 795 aa16.04■□□□□ 0.16
RTN3-213ENST00000543552 CEP85Q6P2H3 762 aa16.04■□□□□ 0.16
RTN3-213ENST00000543552 SH3RF3Q8TEJ3 882 aaPredicted RBP16.04■□□□□ 0.16
RTN3-213ENST00000543552 SMCR8Q8TEV9 937 aaPredicted RBP16.04■□□□□ 0.16
RTN3-213ENST00000543552 TRIM34Q9BYJ4 488 aa16.04■□□□□ 0.16
RTN3-213ENST00000543552 AATFQ9NY61 560 aaKnown RBP eCLIP16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms