RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 TBC1D9BQ66K14 1250 aa9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 PI16Q6UXB8 463 aa9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 CCDC125Q86Z20 511 aa9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 SUDS3Q9H7L9 328 aaPredicted RBP9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 TOMM22Q9NS69 142 aa9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 NARFQ9UHQ1 456 aa9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 CCNL1Q9UK58 526 aaPredicted RBP9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 STK24Q9Y6E0 443 aa9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 SMTNL1A8MU46 457 aa9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 FOXP2O15409 715 aa9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 FIBPO43427 364 aa9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 LARGE1O95461 756 aa9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 ZAP70P43403 619 aa9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 ERFEQ4G0M1 354 aa9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 CREBRFQ8IUR6 639 aa9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 ACRBPQ8NEB7 543 aa9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 HMG20BQ9P0W2 317 aa9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 CNPY2Q9Y2B0 182 aa9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 M0R2C6 588 aa9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 ST3GAL1Q11201 340 aa9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 PUM3Q15397 648 aaKnown RBP9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 CCDC152Q4G0S7 254 aa9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 CCDC186Q7Z3E2 898 aa9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 ALDH8A1Q9H2A2 487 aaPredicted RBP9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 SRP68Q9UHB9 627 aaKnown RBP9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 TNRC6CQ9HCJ0 1690 aaKnown RBP9.24□□□□□ -0.93
PDLIM5-221ENST00000542407 ZKSCAN1P17029 563 aaPredicted RBP9.23□□□□□ -0.93
PDLIM5-221ENST00000542407 KMT5BQ4FZB7 885 aa9.23□□□□□ -0.93
PDLIM5-221ENST00000542407 OSBP2Q969R2 916 aa9.23□□□□□ -0.93
PDLIM5-221ENST00000542407 LIMCH1Q9UPQ0 1083 aa9.23□□□□□ -0.93
PDLIM5-221ENST00000542407 LAMA4Q16363 1823 aa9.23□□□□□ -0.93
PDLIM5-221ENST00000542407 UBR3Q6ZT12 1888 aa9.23□□□□□ -0.93
PDLIM5-221ENST00000542407 MYO5AQ9Y4I1 1855 aaKnown RBP9.23□□□□□ -0.93
PDLIM5-221ENST00000542407 GNPATO15228 680 aa9.23□□□□□ -0.93
PDLIM5-221ENST00000542407 HNRNPH2P55795 449 aaKnown RBP9.23□□□□□ -0.93
PDLIM5-221ENST00000542407 SF3B3Q15393 1217 aaKnown RBP9.23□□□□□ -0.93
PDLIM5-221ENST00000542407 SLC10A5Q5PT55 438 aa9.23□□□□□ -0.93
PDLIM5-221ENST00000542407 CCDC102BQ68D86 513 aa9.23□□□□□ -0.93
PDLIM5-221ENST00000542407 LPIN2Q92539 896 aa9.23□□□□□ -0.93
PDLIM5-221ENST00000542407 DSCC1Q9BVC3 393 aa9.23□□□□□ -0.93
PDLIM5-221ENST00000542407 PDRG1Q9NUG6 133 aa9.23□□□□□ -0.93
PDLIM5-221ENST00000542407 CYP46A1Q9Y6A2 500 aa9.23□□□□□ -0.93
PDLIM5-221ENST00000542407 TAF1P21675 1872 aa9.22□□□□□ -0.93
PDLIM5-221ENST00000542407 H0YHG0 523 aa9.22□□□□□ -0.93
PDLIM5-221ENST00000542407 CYP21A2P08686 494 aa9.22□□□□□ -0.93
PDLIM5-221ENST00000542407 PHKA1P46020 1223 aa9.22□□□□□ -0.93
PDLIM5-221ENST00000542407 SARNPP82979 210 aaKnown RBP9.22□□□□□ -0.93
PDLIM5-221ENST00000542407 FKBP4Q02790 459 aaKnown RBP eCLIP9.22□□□□□ -0.93
PDLIM5-221ENST00000542407 PPP2R5AQ15172 486 aa9.22□□□□□ -0.93
PDLIM5-221ENST00000542407 HELBQ8NG08 1087 aaPredicted RBP9.22□□□□□ -0.93
PDLIM5-221ENST00000542407 LRRC4BQ9NT99 713 aa9.22□□□□□ -0.93
PDLIM5-221ENST00000542407 RPS6KB1P23443 525 aa9.22□□□□□ -0.93
PDLIM5-221ENST00000542407 GORABQ5T7V8 394 aa9.22□□□□□ -0.93
PDLIM5-221ENST00000542407 RNF20Q5VTR2 975 aa9.22□□□□□ -0.93
PDLIM5-221ENST00000542407 STOX1Q6ZVD7 989 aa9.22□□□□□ -0.93
PDLIM5-221ENST00000542407 GTF3C6Q969F1 213 aa9.22□□□□□ -0.93
PDLIM5-221ENST00000542407 LARP6Q9BRS8 491 aaKnown RBP9.22□□□□□ -0.93
PDLIM5-221ENST00000542407 SNAP23O00161 211 aa9.21□□□□□ -0.93
PDLIM5-221ENST00000542407 DTNBO60941 627 aa9.21□□□□□ -0.93
PDLIM5-221ENST00000542407 HSPD1P10809 573 aaKnown RBP9.21□□□□□ -0.93
PDLIM5-221ENST00000542407 PAX3P23760 479 aa9.21□□□□□ -0.93
PDLIM5-221ENST00000542407 TOB2Q14106 344 aaPredicted RBP9.21□□□□□ -0.93
PDLIM5-221ENST00000542407 MFSD4BQ5TF39 518 aa9.21□□□□□ -0.93
PDLIM5-221ENST00000542407 CCDC181Q5TID7 509 aa9.21□□□□□ -0.93
PDLIM5-221ENST00000542407 ZNF397Q8NF99 534 aaPredicted RBP9.21□□□□□ -0.93
PDLIM5-221ENST00000542407 RASSF4Q9H2L5 321 aa9.21□□□□□ -0.93
PDLIM5-221ENST00000542407 PIH1D3Q9NQM4 214 aaKnown RBP9.21□□□□□ -0.93
PDLIM5-221ENST00000542407 NRBP1Q9UHY1 535 aa9.21□□□□□ -0.93
PDLIM5-221ENST00000542407 PAXBP1Q9Y5B6 917 aa9.21□□□□□ -0.93
PDLIM5-221ENST00000542407 A0A0G2JLW4 131 aa9.21□□□□□ -0.94
PDLIM5-221ENST00000542407 ZFYP08048 801 aaPredicted RBP9.21□□□□□ -0.94
PDLIM5-221ENST00000542407 PSMA5P28066 241 aa9.21□□□□□ -0.94
PDLIM5-221ENST00000542407 QTRT2Q9H974 415 aaKnown RBP9.21□□□□□ -0.94
PDLIM5-221ENST00000542407 ZNF215Q9UL58 517 aaPredicted RBP9.21□□□□□ -0.94
PDLIM5-221ENST00000542407 TPCN1Q9ULQ1 816 aa9.21□□□□□ -0.94
PDLIM5-221ENST00000542407 TPD52L2O43399 206 aaKnown RBP9.21□□□□□ -0.94
PDLIM5-221ENST00000542407 ELF2Q15723 593 aa9.21□□□□□ -0.94
PDLIM5-221ENST00000542407 ME3Q16798 604 aa9.21□□□□□ -0.94
PDLIM5-221ENST00000542407 MAF1Q9H063 256 aa9.21□□□□□ -0.94
PDLIM5-221ENST00000542407 PUS7LQ9H0K6 701 aaKnown RBP9.21□□□□□ -0.94
PDLIM5-221ENST00000542407 WDR33Q9C0J8 1336 aaKnown RBP9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 TCRBV5S4A2TA0A5A2 114 aa9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 ABCD1P33897 745 aa9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 CHRNDQ07001 517 aa9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 SYCP1Q15431 976 aa9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 CEP135Q66GS9 1140 aa9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 FBXO38Q6PIJ6 1188 aa9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 RPAINQ86UA6 219 aa9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 MPHOSPH8Q99549 860 aa9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 RTCBQ9Y3I0 505 aaKnown RBP9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 EP400Q96L91 3159 aa9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 CAND2O75155 1236 aa9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 UQCRFS1P1P0C7P4 283 aa9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 SLC5A1P13866 664 aa9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 ADD2P35612 726 aa9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 IGHMBP2P38935 993 aaKnown RBP9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 RAD51AP2Q09MP3 1159 aa9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 KRT32Q14532 448 aa9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 BLOC1S2Q6QNY1 142 aa9.2□□□□□ -0.94
PDLIM5-221ENST00000542407 BICDL1Q6ZP65 573 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms