RNA–Protein interactions for RNA: ENST00000540574.5

PHC1-208, Transcript of polyhomeotic homolog 1, humanhuman

TSL 1 (best)

Gene PHC1, Length 3,869 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHC1-208ENST00000540574 UBE2Q2Q8WVN8 375 aa11.34□□□□□ -0.59
PHC1-208ENST00000540574 UBXN4Q92575 508 aa11.34□□□□□ -0.59
PHC1-208ENST00000540574 UTYO14607 1347 aa11.33□□□□□ -0.59
PHC1-208ENST00000540574 NEDD4P46934 1319 aa11.33□□□□□ -0.59
PHC1-208ENST00000540574 PATL2C9JE40 543 aaKnown RBP11.33□□□□□ -0.6
PHC1-208ENST00000540574 CIAO1O76071 339 aa11.33□□□□□ -0.6
PHC1-208ENST00000540574 FDPSP14324 419 aaKnown RBP11.33□□□□□ -0.6
PHC1-208ENST00000540574 KIF23Q02241 960 aaPredicted RBP11.33□□□□□ -0.6
PHC1-208ENST00000540574 ISCA1Q9BUE6 129 aa11.33□□□□□ -0.6
PHC1-208ENST00000540574 CNNM2Q9H8M5 875 aa11.33□□□□□ -0.6
PHC1-208ENST00000540574 SERTAD1Q9UHV2 236 aa11.33□□□□□ -0.6
PHC1-208ENST00000540574 USP27XA6NNY8 438 aa11.33□□□□□ -0.6
PHC1-208ENST00000540574 CLSTN1O94985 981 aa11.33□□□□□ -0.6
PHC1-208ENST00000540574 CCT6AP40227 531 aaKnown RBP11.33□□□□□ -0.6
PHC1-208ENST00000540574 SMYD4Q8IYR2 804 aaPredicted RBP11.33□□□□□ -0.6
PHC1-208ENST00000540574 ZNF444Q8N0Y2 327 aaPredicted RBP11.33□□□□□ -0.6
PHC1-208ENST00000540574 LZTFL1Q9NQ48 299 aa11.33□□□□□ -0.6
PHC1-208ENST00000540574 FANCLQ9NW38 375 aa11.33□□□□□ -0.6
PHC1-208ENST00000540574 WTIPA6NIX2 430 aaPredicted RBP11.33□□□□□ -0.6
PHC1-208ENST00000540574 TRIM75PA6NK02 468 aa11.33□□□□□ -0.6
PHC1-208ENST00000540574 TXLNAP40222 546 aa11.33□□□□□ -0.6
PHC1-208ENST00000540574 ADKP55263 362 aaKnown RBP11.33□□□□□ -0.6
PHC1-208ENST00000540574 EIF6P56537 245 aaKnown RBP11.33□□□□□ -0.6
PHC1-208ENST00000540574 USPL1Q5W0Q7 1092 aa11.33□□□□□ -0.6
PHC1-208ENST00000540574 LRRC8AQ8IWT6 810 aa11.33□□□□□ -0.6
PHC1-208ENST00000540574 GPR101Q96P66 508 aaPredicted RBP11.33□□□□□ -0.6
PHC1-208ENST00000540574 BLZF1Q9H2G9 400 aa11.33□□□□□ -0.6
PHC1-208ENST00000540574 GPR108Q9NPR9 543 aa11.33□□□□□ -0.6
PHC1-208ENST00000540574 PCDHA5Q9Y5H7 936 aa11.33□□□□□ -0.6
PHC1-208ENST00000540574 FOXN1O15353 648 aa11.32□□□□□ -0.6
PHC1-208ENST00000540574 CAVIN2O95810 425 aa11.32□□□□□ -0.6
PHC1-208ENST00000540574 EXOSC10Q01780 885 aaKnown RBP11.32□□□□□ -0.6
PHC1-208ENST00000540574 ENOX2Q16206 610 aaKnown RBP11.32□□□□□ -0.6
PHC1-208ENST00000540574 PIK3AP1Q6ZUJ8 805 aa11.32□□□□□ -0.6
PHC1-208ENST00000540574 ZNF654Q8IZM8 581 aa11.32□□□□□ -0.6
PHC1-208ENST00000540574 TMEM87BQ96K49 555 aa11.32□□□□□ -0.6
PHC1-208ENST00000540574 TMX4Q9H1E5 349 aaPredicted RBP11.32□□□□□ -0.6
PHC1-208ENST00000540574 TNKSO95271 1327 aa11.32□□□□□ -0.6
PHC1-208ENST00000540574 POLR3GO15318 223 aaPredicted RBP11.32□□□□□ -0.6
PHC1-208ENST00000540574 GUCY1A2P33402 732 aa11.32□□□□□ -0.6
PHC1-208ENST00000540574 NAP1L1P55209 391 aaKnown RBP11.32□□□□□ -0.6
PHC1-208ENST00000540574 GSDMDP57764 484 aa11.32□□□□□ -0.6
PHC1-208ENST00000540574 PICALMQ13492 652 aa11.32□□□□□ -0.6
PHC1-208ENST00000540574 HEATR3Q7Z4Q2 680 aa11.32□□□□□ -0.6
PHC1-208ENST00000540574 NFE2L3Q9Y4A8 694 aa11.32□□□□□ -0.6
PHC1-208ENST00000540574 CCDC194A0A1B0GVG4 234 aa11.32□□□□□ -0.6
PHC1-208ENST00000540574 MPHOSPH10O00566 681 aaKnown RBP11.32□□□□□ -0.6
PHC1-208ENST00000540574 RBM5P52756 815 aaKnown RBP eCLIP11.32□□□□□ -0.6
PHC1-208ENST00000540574 MYL5Q02045 173 aa11.32□□□□□ -0.6
PHC1-208ENST00000540574 TDRD7Q8NHU6 1098 aaKnown RBP11.32□□□□□ -0.6
PHC1-208ENST00000540574 KAT14Q9H8E8 782 aa11.32□□□□□ -0.6
PHC1-208ENST00000540574 CEP131Q9UPN4 1083 aa11.32□□□□□ -0.6
PHC1-208ENST00000540574 REREQ9P2R6 1566 aa11.31□□□□□ -0.6
PHC1-208ENST00000540574 DNA2P51530 1060 aa11.31□□□□□ -0.6
PHC1-208ENST00000540574 ANTXR2P58335 489 aa11.31□□□□□ -0.6
PHC1-208ENST00000540574 PPARAQ07869 468 aa11.31□□□□□ -0.6
PHC1-208ENST00000540574 ELF2Q15723 593 aa11.31□□□□□ -0.6
PHC1-208ENST00000540574 LONRF3Q496Y0 759 aa11.31□□□□□ -0.6
PHC1-208ENST00000540574 STRBPQ96SI9 672 aaKnown RBP11.31□□□□□ -0.6
PHC1-208ENST00000540574 RTEL1Q9NZ71 1219 aa11.31□□□□□ -0.6
PHC1-208ENST00000540574 TNS3Q68CZ2 1445 aa11.31□□□□□ -0.6
PHC1-208ENST00000540574 AKAP12Q02952 1782 aa11.31□□□□□ -0.6
PHC1-208ENST00000540574 RFC4P35249 363 aa11.31□□□□□ -0.6
PHC1-208ENST00000540574 CASP7P55210 303 aa11.31□□□□□ -0.6
PHC1-208ENST00000540574 RRAGBQ5VZM2 374 aa11.31□□□□□ -0.6
PHC1-208ENST00000540574 TRMT1LQ7Z2T5 733 aaKnown RBP11.31□□□□□ -0.6
PHC1-208ENST00000540574 ZSCAN29Q8IWY8 852 aaPredicted RBP11.31□□□□□ -0.6
PHC1-208ENST00000540574 SMARCC2Q8TAQ2 1214 aa11.31□□□□□ -0.6
PHC1-208ENST00000540574 DESI2Q9BSY9 194 aa11.31□□□□□ -0.6
PHC1-208ENST00000540574 SRP68Q9UHB9 627 aaKnown RBP11.31□□□□□ -0.6
PHC1-208ENST00000540574 RIPOR2Q9Y4F9 1068 aa11.31□□□□□ -0.6
PHC1-208ENST00000540574 YEATS4O95619 227 aa11.31□□□□□ -0.6
PHC1-208ENST00000540574 CYP19A1P11511 503 aaPredicted RBP11.31□□□□□ -0.6
PHC1-208ENST00000540574 ERFEQ4G0M1 354 aa11.31□□□□□ -0.6
PHC1-208ENST00000540574 TRERF1Q96PN7 1200 aa11.31□□□□□ -0.6
PHC1-208ENST00000540574 NUP88Q99567 741 aaPredicted RBP11.31□□□□□ -0.6
PHC1-208ENST00000540574 ZNF215Q9UL58 517 aaPredicted RBP11.31□□□□□ -0.6
PHC1-208ENST00000540574 ARHGAP23Q9P227 1491 aa11.3□□□□□ -0.6
PHC1-208ENST00000540574 SMIM22K7EJ46 135 aa11.3□□□□□ -0.6
PHC1-208ENST00000540574 RIMBP2O15034 1052 aa11.3□□□□□ -0.6
PHC1-208ENST00000540574 IPO7O95373 1038 aaKnown RBP11.3□□□□□ -0.6
PHC1-208ENST00000540574 ARHGAP29Q52LW3 1261 aa11.3□□□□□ -0.6
PHC1-208ENST00000540574 MB21D2Q8IYB1 491 aaPredicted RBP11.3□□□□□ -0.6
PHC1-208ENST00000540574 FANCBQ8NB91 859 aa11.3□□□□□ -0.6
PHC1-208ENST00000540574 RASGRP4Q8TDF6 673 aa11.3□□□□□ -0.6
PHC1-208ENST00000540574 PKNOX2Q96KN3 472 aa11.3□□□□□ -0.6
PHC1-208ENST00000540574 DACH1Q9UI36 760 aa11.3□□□□□ -0.6
PHC1-208ENST00000540574 ZMYM6O95789 1325 aa11.3□□□□□ -0.6
PHC1-208ENST00000540574 FER1L4A9Z1Z3 1794 aa11.3□□□□□ -0.6
PHC1-208ENST00000540574 N4BP3O15049 544 aa11.3□□□□□ -0.6
PHC1-208ENST00000540574 NMT2O60551 498 aa11.3□□□□□ -0.6
PHC1-208ENST00000540574 WDHD1O75717 1129 aaPredicted RBP11.3□□□□□ -0.6
PHC1-208ENST00000540574 GOLGA8HP0CJ92 632 aa11.3□□□□□ -0.6
PHC1-208ENST00000540574 NLRP12P59046 1061 aa11.3□□□□□ -0.6
PHC1-208ENST00000540574 NOSTRINQ8IVI9 506 aa11.3□□□□□ -0.6
PHC1-208ENST00000540574 CRNKL1Q9BZJ0 848 aaKnown RBP11.3□□□□□ -0.6
PHC1-208ENST00000540574 PCDHB6Q9Y5E3 794 aa11.3□□□□□ -0.6
PHC1-208ENST00000540574 SH2B2O14492 632 aaPredicted RBP11.3□□□□□ -0.6
PHC1-208ENST00000540574 TSPY3P0CV98 308 aa11.3□□□□□ -0.6
PHC1-208ENST00000540574 TSPY8P0CW00 308 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms