RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 JARID2Q92833 1246 aaPredicted RBP9.74□□□□□ -0.85
YBX3-208ENST00000540447 DHX58Q96C10 678 aa9.74□□□□□ -0.85
YBX3-208ENST00000540447 RMI1Q9H9A7 625 aa9.74□□□□□ -0.85
YBX3-208ENST00000540447 UBAP1Q9NZ09 502 aa9.74□□□□□ -0.85
YBX3-208ENST00000540447 FRMD4BQ9Y2L6 1034 aa9.74□□□□□ -0.85
YBX3-208ENST00000540447 WDR75Q8IWA0 830 aaKnown RBP9.74□□□□□ -0.85
YBX3-208ENST00000540447 ANGPTL2Q9UKU9 493 aa9.74□□□□□ -0.85
YBX3-208ENST00000540447 KDM2BQ8NHM5 1336 aa9.74□□□□□ -0.85
YBX3-208ENST00000540447 EIF4E1BA6NMX2 242 aaKnown RBP9.74□□□□□ -0.85
YBX3-208ENST00000540447 CDC25BP30305 580 aa9.74□□□□□ -0.85
YBX3-208ENST00000540447 PHBP35232 272 aa9.74□□□□□ -0.85
YBX3-208ENST00000540447 DACT3Q96B18 629 aaPredicted RBP9.74□□□□□ -0.85
YBX3-208ENST00000540447 THOC1Q96FV9 657 aaKnown RBP9.74□□□□□ -0.85
YBX3-208ENST00000540447 TXLNGQ9NUQ3 528 aa9.74□□□□□ -0.85
YBX3-208ENST00000540447 NRBP1Q9UHY1 535 aa9.74□□□□□ -0.85
YBX3-208ENST00000540447 CAND2O75155 1236 aa9.74□□□□□ -0.85
YBX3-208ENST00000540447 MCM7P33993 719 aa9.74□□□□□ -0.85
YBX3-208ENST00000540447 RRP36Q96EU6 259 aaKnown RBP9.74□□□□□ -0.85
YBX3-208ENST00000540447 RILPQ96NA2 401 aa9.74□□□□□ -0.85
YBX3-208ENST00000540447 DRC3Q9H069 523 aa9.74□□□□□ -0.85
YBX3-208ENST00000540447 NUTM2FA1L443 756 aa9.74□□□□□ -0.85
YBX3-208ENST00000540447 SERPINI2O75830 405 aa9.74□□□□□ -0.85
YBX3-208ENST00000540447 S100BP04271 92 aaPredicted RBP9.74□□□□□ -0.85
YBX3-208ENST00000540447 STAT6P42226 847 aa9.74□□□□□ -0.85
YBX3-208ENST00000540447 MRRFQ96E11 262 aaKnown RBP9.74□□□□□ -0.85
YBX3-208ENST00000540447 OLFM3Q96PB7 478 aa9.74□□□□□ -0.85
YBX3-208ENST00000540447 EEF1DP29692 281 aaKnown RBP9.73□□□□□ -0.85
YBX3-208ENST00000540447 IQCDQ96DY2 449 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 DESI2Q9BSY9 194 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 ANLNQ9NQW6 1124 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 ETAA1Q9NY74 926 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 CCDC194A0A1B0GVG4 234 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 DKC1O60832 514 aaKnown RBP eCLIP9.73□□□□□ -0.85
YBX3-208ENST00000540447 TRPA1O75762 1119 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 LONP1P36776 959 aaKnown RBP9.73□□□□□ -0.85
YBX3-208ENST00000540447 EP400NLQ6ZTU2 488 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 SCYL3Q8IZE3 742 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 INTS9Q9NV88 658 aaKnown RBP9.73□□□□□ -0.85
YBX3-208ENST00000540447 ZRANB1Q9UGI0 708 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 ATP6V0A2Q9Y487 856 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 FGD6Q6ZV73 1430 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 GAS8O95995 478 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 LMNAP02545 664 aaKnown RBP9.73□□□□□ -0.85
YBX3-208ENST00000540447 TPP2P29144 1249 aaPredicted RBP9.73□□□□□ -0.85
YBX3-208ENST00000540447 ADKP55263 362 aaKnown RBP9.73□□□□□ -0.85
YBX3-208ENST00000540447 ZNF280CQ8ND82 737 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 VPS16Q9H269 839 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 RHBDL2Q9NX52 303 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 BIN2Q9UBW5 565 aaPredicted RBP9.73□□□□□ -0.85
YBX3-208ENST00000540447 COMMD10Q9Y6G5 202 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 NACADO15069 1562 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 BMP15O95972 392 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 NNTQ13423 1086 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 TCEANC2Q96MN5 208 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 STXBP3O00186 592 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 KRT15P19012 456 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 METAP2P50579 478 aaKnown RBP eCLIP9.73□□□□□ -0.851e-9■■■■□ 22.3
YBX3-208ENST00000540447 LMNB2Q03252 620 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 SEPT8Q92599 483 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 MAP3K1Q13233 1512 aa9.73□□□□□ -0.85
YBX3-208ENST00000540447 A0A087WZG4 1122 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 ZNF213O14771 459 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 CCDC159P0C7I6 412 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 PLCB3Q01970 1234 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 DEUP1Q05D60 604 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 PIP4K2CQ8TBX8 421 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 ZCCHC17Q9NP64 241 aaKnown RBP9.72□□□□□ -0.85
YBX3-208ENST00000540447 MCF2LO15068 1137 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 MUM1L1Q5H9M0 696 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 KCNV2Q8TDN2 545 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 ALG1Q9BT22 464 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 KRT9P35527 623 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 NEK2P51955 445 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 FCHSD1Q86WN1 690 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 NLRP7Q8WX94 980 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 LRRC27Q9C0I9 530 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 SH2D4AQ9H788 454 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 ABCB6Q9NP58 842 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 WWC3Q9ULE0 1092 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 ANKRD20A4Q4UJ75 823 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 ANKRD20A8PQ5CZ79 823 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 ANKRD20A2Q5SQ80 823 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 ANKRD20A1Q5TYW2 823 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 CC2D1AQ6P1N0 951 aaPredicted RBP9.72□□□□□ -0.85
YBX3-208ENST00000540447 FERMT1Q9BQL6 677 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 SLC26A6Q9BXS9 759 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 RAB17Q9H0T7 212 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 EPHB4P54760 987 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 SYCP3Q8IZU3 236 aa9.72□□□□□ -0.85
YBX3-208ENST00000540447 BRD1O95696 1058 aa9.71□□□□□ -0.85
YBX3-208ENST00000540447 PDE1AP54750 535 aa9.71□□□□□ -0.85
YBX3-208ENST00000540447 NBPF14Q5TI25 921 aa9.71□□□□□ -0.85
YBX3-208ENST00000540447 WDR78Q5VTH9 848 aa9.71□□□□□ -0.85
YBX3-208ENST00000540447 CACTINQ8WUQ7 758 aaKnown RBP9.71□□□□□ -0.85
YBX3-208ENST00000540447 ERBINQ96RT1 1412 aa9.71□□□□□ -0.85
YBX3-208ENST00000540447 ARHGEF9O43307 516 aa9.71□□□□□ -0.85
YBX3-208ENST00000540447 NR1D1P20393 614 aa9.71□□□□□ -0.85
YBX3-208ENST00000540447 TTF1Q15361 905 aaPredicted RBP9.71□□□□□ -0.85
YBX3-208ENST00000540447 TRIML2Q8N7C3 387 aa9.71□□□□□ -0.85
YBX3-208ENST00000540447 TXNDC16Q9P2K2 825 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms