RNA–Protein interactions for RNA: ENST00000538070.1

UBE3B-208, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 3,655 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-208ENST00000538070 GOLGA8DPQ0D2H9 430 aa10.06□□□□□ -0.8
UBE3B-208ENST00000538070 ADALQ6DHV7 355 aa10.06□□□□□ -0.8
UBE3B-208ENST00000538070 KLHL10Q6JEL2 608 aa10.06□□□□□ -0.8
UBE3B-208ENST00000538070 CNNM3Q8NE01 707 aa10.06□□□□□ -0.8
UBE3B-208ENST00000538070 STAMQ92783 540 aa10.06□□□□□ -0.8
UBE3B-208ENST00000538070 NAT10Q9H0A0 1025 aaKnown RBP10.06□□□□□ -0.8
UBE3B-208ENST00000538070 RTEL1Q9NZ71 1219 aa10.06□□□□□ -0.8
UBE3B-208ENST00000538070 FOXN1O15353 648 aa10.06□□□□□ -0.8
UBE3B-208ENST00000538070 NTSR2O95665 410 aa10.06□□□□□ -0.8
UBE3B-208ENST00000538070 ARID4AP29374 1257 aaPredicted RBP10.06□□□□□ -0.8
UBE3B-208ENST00000538070 PARP10Q53GL7 1025 aa10.06□□□□□ -0.8
UBE3B-208ENST00000538070 FAM177A1Q8N128 213 aaPredicted RBP10.06□□□□□ -0.8
UBE3B-208ENST00000538070 IGDCC4Q8TDY8 1250 aa10.06□□□□□ -0.8
UBE3B-208ENST00000538070 TMX1Q9H3N1 280 aa10.06□□□□□ -0.8
UBE3B-208ENST00000538070 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.06□□□□□ -0.8
UBE3B-208ENST00000538070 V9GY48 417 aaPredicted RBP10.06□□□□□ -0.8
UBE3B-208ENST00000538070 V9GYY5 206 aaPredicted RBP10.06□□□□□ -0.8
UBE3B-208ENST00000538070 TNS2Q63HR2 1409 aa10.05□□□□□ -0.8
UBE3B-208ENST00000538070 TCRBV5S4A2TA0A5A2 114 aa10.05□□□□□ -0.8
UBE3B-208ENST00000538070 FAM205CA6NFA0 338 aa10.05□□□□□ -0.8
UBE3B-208ENST00000538070 COBLO75128 1261 aa10.05□□□□□ -0.8
UBE3B-208ENST00000538070 SERPINC1P01008 464 aa10.05□□□□□ -0.8
UBE3B-208ENST00000538070 CYP2D6P10635 497 aa10.05□□□□□ -0.8
UBE3B-208ENST00000538070 MEX3CQ5U5Q3 659 aaKnown RBP10.05□□□□□ -0.8
UBE3B-208ENST00000538070 OXER1Q8TDS5 423 aa10.05□□□□□ -0.8
UBE3B-208ENST00000538070 NLRP3Q96P20 1036 aa10.05□□□□□ -0.8
UBE3B-208ENST00000538070 CTAGE5O15320 804 aa10.05□□□□□ -0.8
UBE3B-208ENST00000538070 FGFR2P21802 821 aa10.05□□□□□ -0.8
UBE3B-208ENST00000538070 AFMP43652 599 aa10.05□□□□□ -0.8
UBE3B-208ENST00000538070 GRIN1Q05586 938 aa10.05□□□□□ -0.8
UBE3B-208ENST00000538070 FMR1NBQ8N0W7 255 aaPredicted RBP10.05□□□□□ -0.8
UBE3B-208ENST00000538070 KRT23Q9C075 422 aa10.05□□□□□ -0.8
UBE3B-208ENST00000538070 KIAA1468Q9P260 1216 aa10.05□□□□□ -0.8
UBE3B-208ENST00000538070 TNKSO95271 1327 aa10.05□□□□□ -0.8
UBE3B-208ENST00000538070 TNNT1P13805 278 aa10.05□□□□□ -0.8
UBE3B-208ENST00000538070 CDK11BP21127 795 aaKnown RBP10.05□□□□□ -0.8
UBE3B-208ENST00000538070 PRDX5P30044 214 aa10.05□□□□□ -0.8
UBE3B-208ENST00000538070 IFIT1BQ5T764 474 aaKnown RBP10.05□□□□□ -0.8
UBE3B-208ENST00000538070 BRAPQ7Z569 592 aa10.05□□□□□ -0.8
UBE3B-208ENST00000538070 TMEM87BQ96K49 555 aa10.05□□□□□ -0.8
UBE3B-208ENST00000538070 SALL1Q9NSC2 1324 aa10.05□□□□□ -0.8
UBE3B-208ENST00000538070 SKILP12757 684 aa10.04□□□□□ -0.8
UBE3B-208ENST00000538070 ZNF654Q8IZM8 581 aa10.04□□□□□ -0.8
UBE3B-208ENST00000538070 KIAA1524Q8TCG1 905 aa10.04□□□□□ -0.8
UBE3B-208ENST00000538070 CCNL1Q9UK58 526 aaPredicted RBP10.04□□□□□ -0.8
UBE3B-208ENST00000538070 MINPP1Q9UNW1 487 aa10.04□□□□□ -0.8
UBE3B-208ENST00000538070 MROH7-TTC4A0A0A0MT08 1334 aa10.04□□□□□ -0.8
UBE3B-208ENST00000538070 RAD21O60216 631 aa10.04□□□□□ -0.8
UBE3B-208ENST00000538070 ATP1A3P13637 1013 aa10.04□□□□□ -0.8
UBE3B-208ENST00000538070 CASP1P29466 404 aa10.04□□□□□ -0.8
UBE3B-208ENST00000538070 CFAP100Q494V2 611 aa10.04□□□□□ -0.8
UBE3B-208ENST00000538070 DZIP1Q86YF9 867 aaKnown RBP10.04□□□□□ -0.8
UBE3B-208ENST00000538070 TDRD7Q8NHU6 1098 aaKnown RBP10.04□□□□□ -0.8
UBE3B-208ENST00000538070 RPS8P62241 208 aaKnown RBP10.04□□□□□ -0.8
UBE3B-208ENST00000538070 IQCB1Q15051 598 aa10.04□□□□□ -0.8
UBE3B-208ENST00000538070 TXNRD3Q86VQ6 643 aa10.04□□□□□ -0.8
UBE3B-208ENST00000538070 TRMT44Q8IYL2 757 aaKnown RBP10.04□□□□□ -0.8
UBE3B-208ENST00000538070 JMYQ8N9B5 988 aa10.04□□□□□ -0.8
UBE3B-208ENST00000538070 ENGASEQ8NFI3 743 aa10.04□□□□□ -0.8
UBE3B-208ENST00000538070 RASSF8Q8NHQ8 419 aa10.04□□□□□ -0.8
UBE3B-208ENST00000538070 ESR2Q92731 530 aa10.04□□□□□ -0.8
UBE3B-208ENST00000538070 MCM9Q9NXL9 1143 aa10.04□□□□□ -0.8
UBE3B-208ENST00000538070 SAP30BPQ9UHR5 308 aaKnown RBP10.04□□□□□ -0.8
UBE3B-208ENST00000538070 RIOK3O14730 519 aaKnown RBP10.03□□□□□ -0.8
UBE3B-208ENST00000538070 POLR2DO15514 142 aaKnown RBP10.03□□□□□ -0.8
UBE3B-208ENST00000538070 PLEKHA8P1O95397 391 aa10.03□□□□□ -0.8
UBE3B-208ENST00000538070 TPM4P67936 248 aa10.03□□□□□ -0.8
UBE3B-208ENST00000538070 ZNF174Q15697 407 aa10.03□□□□□ -0.8
UBE3B-208ENST00000538070 FANCBQ8NB91 859 aa10.03□□□□□ -0.8
UBE3B-208ENST00000538070 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.03□□□□□ -0.8
UBE3B-208ENST00000538070 XPO4Q9C0E2 1151 aaKnown RBP10.03□□□□□ -0.8
UBE3B-208ENST00000538070 CNNM2Q9H8M5 875 aa10.03□□□□□ -0.8
UBE3B-208ENST00000538070 PCDHB6Q9Y5E3 794 aa10.03□□□□□ -0.8
UBE3B-208ENST00000538070 TSPY2A6NKD2 308 aa10.03□□□□□ -0.8
UBE3B-208ENST00000538070 RFC4P35249 363 aa10.03□□□□□ -0.8
UBE3B-208ENST00000538070 USP5P45974 858 aa10.03□□□□□ -0.8
UBE3B-208ENST00000538070 STX17P56962 302 aa10.03□□□□□ -0.8
UBE3B-208ENST00000538070 LONRF3Q496Y0 759 aa10.03□□□□□ -0.8
UBE3B-208ENST00000538070 FAM217BQ9NTX9 383 aaPredicted RBP10.03□□□□□ -0.8
UBE3B-208ENST00000538070 USP27XA6NNY8 438 aa10.03□□□□□ -0.8
UBE3B-208ENST00000538070 NAA30Q147X3 362 aaPredicted RBP10.03□□□□□ -0.8
UBE3B-208ENST00000538070 OLFM4Q6UX06 510 aa10.03□□□□□ -0.8
UBE3B-208ENST00000538070 USP49Q70CQ1 688 aa10.03□□□□□ -0.8
UBE3B-208ENST00000538070 IQCA1Q86XH1 822 aa10.03□□□□□ -0.8
UBE3B-208ENST00000538070 DHX40Q8IX18 779 aaKnown RBP10.03□□□□□ -0.8
UBE3B-208ENST00000538070 SMARCC1Q92922 1105 aaPredicted RBP10.03□□□□□ -0.8
UBE3B-208ENST00000538070 DHX58Q96C10 678 aa10.03□□□□□ -0.8
UBE3B-208ENST00000538070 FAM84BQ96KN1 310 aaPredicted RBP10.03□□□□□ -0.8
UBE3B-208ENST00000538070 KCNH3Q9ULD8 1083 aa10.03□□□□□ -0.8
UBE3B-208ENST00000538070 F8W031 263 aaPredicted RBP10.02□□□□□ -0.8
UBE3B-208ENST00000538070 YEATS4O95619 227 aa10.02□□□□□ -0.8
UBE3B-208ENST00000538070 HIBADHP31937 336 aaKnown RBP10.02□□□□□ -0.8
UBE3B-208ENST00000538070 SLC39A14Q15043 492 aa10.02□□□□□ -0.8
UBE3B-208ENST00000538070 DIXDC1Q155Q3 683 aa10.02□□□□□ -0.8
UBE3B-208ENST00000538070 SHC4Q6S5L8 630 aa10.02□□□□□ -0.8
UBE3B-208ENST00000538070 CATIPQ7Z7H3 387 aa10.02□□□□□ -0.8
UBE3B-208ENST00000538070 RNF41Q9H4P4 317 aaPredicted RBP10.02□□□□□ -0.8
UBE3B-208ENST00000538070 POLR3EQ9NVU0 708 aa10.02□□□□□ -0.8
UBE3B-208ENST00000538070 CRYBG1Q9Y4K1 1723 aa10.02□□□□□ -0.81
UBE3B-208ENST00000538070 NOM1Q5C9Z4 860 aaKnown RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms