RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 CCDC158Q5M9N0 1113 aa14.31□□□□□ -0.12
CLIP1-208ENST00000537004 ZGPATQ8N5A5 531 aaKnown RBP14.31□□□□□ -0.12
CLIP1-208ENST00000537004 CSRNP1Q96S65 589 aa14.31□□□□□ -0.12
CLIP1-208ENST00000537004 BEGAINQ9BUH8 593 aa14.31□□□□□ -0.12
CLIP1-208ENST00000537004 IL25Q9H293 177 aa14.31□□□□□ -0.12
CLIP1-208ENST00000537004 USP40Q9NVE5 1235 aa14.31□□□□□ -0.12
CLIP1-208ENST00000537004 PDS5AQ29RF7 1337 aaKnown RBP14.31□□□□□ -0.12
CLIP1-208ENST00000537004 ZBTB22O15209 634 aa14.31□□□□□ -0.12
CLIP1-208ENST00000537004 HSPA8P11142 646 aaKnown RBP14.31□□□□□ -0.12
CLIP1-208ENST00000537004 CTCFP49711 727 aaPredicted RBP14.31□□□□□ -0.12
CLIP1-208ENST00000537004 ZFPM1Q8IX07 1006 aa14.31□□□□□ -0.12
CLIP1-208ENST00000537004 TMOD2Q9NZR1 351 aa14.31□□□□□ -0.12
CLIP1-208ENST00000537004 MYH13Q9UKX3 1938 aa14.3□□□□□ -0.12
CLIP1-208ENST00000537004 CYP2E1P05181 493 aaPredicted RBP14.3□□□□□ -0.12
CLIP1-208ENST00000537004 UQCRFS1P1P0C7P4 283 aa14.3□□□□□ -0.12
CLIP1-208ENST00000537004 MCCP23508 829 aa14.3□□□□□ -0.12
CLIP1-208ENST00000537004 ZAP70P43403 619 aa14.3□□□□□ -0.12
CLIP1-208ENST00000537004 TNNI2P48788 182 aa14.3□□□□□ -0.12
CLIP1-208ENST00000537004 RAI14Q9P0K7 980 aa14.3□□□□□ -0.12
CLIP1-208ENST00000537004 CENPFP49454 3210 aa14.29□□□□□ -0.12
CLIP1-208ENST00000537004 SGSM2O43147 1006 aa14.29□□□□□ -0.12
CLIP1-208ENST00000537004 MAP3K11Q16584 847 aa14.29□□□□□ -0.12
CLIP1-208ENST00000537004 NSUN4Q96CB9 384 aaKnown RBP14.29□□□□□ -0.12
CLIP1-208ENST00000537004 EVI5LQ96CN4 794 aa14.29□□□□□ -0.12
CLIP1-208ENST00000537004 CHMP5Q9NZZ3 219 aa14.29□□□□□ -0.12
CLIP1-208ENST00000537004 LRP2BPQ9P2M1 347 aa14.29□□□□□ -0.12
CLIP1-208ENST00000537004 FAM198AQ9UFP1 575 aa14.29□□□□□ -0.12
CLIP1-208ENST00000537004 GAKO14976 1311 aa14.29□□□□□ -0.12
CLIP1-208ENST00000537004 THSD7BQ9C0I4 1608 aa14.29□□□□□ -0.12
CLIP1-208ENST00000537004 EPB41L2O43491 1005 aaKnown RBP14.29□□□□□ -0.12
CLIP1-208ENST00000537004 BTDP43251 543 aa14.29□□□□□ -0.12
CLIP1-208ENST00000537004 SPTY2D1Q68D10 685 aaPredicted RBP14.29□□□□□ -0.12
CLIP1-208ENST00000537004 MIGA2Q7L4E1 593 aa14.29□□□□□ -0.12
CLIP1-208ENST00000537004 DIAPH3Q9NSV4 1193 aa14.29□□□□□ -0.12
CLIP1-208ENST00000537004 ECM29Q5VYK3 1845 aa14.28□□□□□ -0.12
CLIP1-208ENST00000537004 ST18O60284 1047 aa14.28□□□□□ -0.12
CLIP1-208ENST00000537004 HSP90AA1P07900 732 aaKnown RBP14.28□□□□□ -0.12
CLIP1-208ENST00000537004 SLURP2P0DP57 97 aa14.28□□□□□ -0.12
CLIP1-208ENST00000537004 DDIT3P35638 169 aa14.28□□□□□ -0.12
CLIP1-208ENST00000537004 CWC27Q6UX04 472 aaKnown RBP14.28□□□□□ -0.12
CLIP1-208ENST00000537004 FAM83AQ86UY5 434 aa14.28□□□□□ -0.12
CLIP1-208ENST00000537004 SLC10A4Q96EP9 437 aa14.28□□□□□ -0.12
CLIP1-208ENST00000537004 PIH1D3Q9NQM4 214 aaKnown RBP14.28□□□□□ -0.12
CLIP1-208ENST00000537004 MROH7-TTC4A0A0A0MT08 1334 aa14.27□□□□□ -0.12
CLIP1-208ENST00000537004 TRPA1O75762 1119 aa14.27□□□□□ -0.12
CLIP1-208ENST00000537004 IREB2P48200 963 aaKnown RBP14.27□□□□□ -0.12
CLIP1-208ENST00000537004 ANAPC15P60006 121 aa14.27□□□□□ -0.12
CLIP1-208ENST00000537004 FKBP1CQ5VVH2 108 aa14.27□□□□□ -0.12
CLIP1-208ENST00000537004 CNKSR2Q8WXI2 1034 aa14.27□□□□□ -0.12
CLIP1-208ENST00000537004 FAM163AQ96GL9 167 aaPredicted RBP14.27□□□□□ -0.12
CLIP1-208ENST00000537004 DDX4Q9NQI0 724 aaKnown RBP14.27□□□□□ -0.12
CLIP1-208ENST00000537004 PALD1Q9ULE6 856 aa14.27□□□□□ -0.12
CLIP1-208ENST00000537004 RAD50Q92878 1312 aa14.27□□□□□ -0.13
CLIP1-208ENST00000537004 SPRYD7Q5W111 196 aa14.27□□□□□ -0.13
CLIP1-208ENST00000537004 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.27□□□□□ -0.13
CLIP1-208ENST00000537004 RUFY2Q8WXA3 655 aa14.27□□□□□ -0.13
CLIP1-208ENST00000537004 BOLA2Q9H3K6 86 aa14.27□□□□□ -0.13
CLIP1-208ENST00000537004 ELP3Q9H9T3 547 aa14.27□□□□□ -0.13
CLIP1-208ENST00000537004 WDHD1O75717 1129 aaPredicted RBP14.26□□□□□ -0.13
CLIP1-208ENST00000537004 GJA5P36382 358 aa14.26□□□□□ -0.13
CLIP1-208ENST00000537004 RHBDL3P58872 404 aa14.26□□□□□ -0.13
CLIP1-208ENST00000537004 PICALMQ13492 652 aa14.26□□□□□ -0.13
CLIP1-208ENST00000537004 ADGRA1Q86SQ6 560 aa14.26□□□□□ -0.13
CLIP1-208ENST00000537004 FAM151AQ8WW52 585 aa14.26□□□□□ -0.13
CLIP1-208ENST00000537004 ZNF512BQ96KM6 892 aaPredicted RBP14.26□□□□□ -0.13
CLIP1-208ENST00000537004 RNF186Q9NXI6 227 aa14.26□□□□□ -0.13
CLIP1-208ENST00000537004 GPR75-ASB3A0A0A6YYF3 556 aa14.25□□□□□ -0.13
CLIP1-208ENST00000537004 VGLL4Q14135 290 aa14.25□□□□□ -0.13
CLIP1-208ENST00000537004 ANKRD13AQ8IZ07 590 aa14.25□□□□□ -0.13
CLIP1-208ENST00000537004 ZKSCAN4Q969J2 545 aaPredicted RBP14.25□□□□□ -0.13
CLIP1-208ENST00000537004 IL17RAQ96F46 866 aa14.25□□□□□ -0.13
CLIP1-208ENST00000537004 LSG1Q9H089 658 aaKnown RBP14.25□□□□□ -0.13
CLIP1-208ENST00000537004 HTTP42858 3142 aa14.25□□□□□ -0.13
CLIP1-208ENST00000537004 HIP1O00291 1037 aa14.25□□□□□ -0.13
CLIP1-208ENST00000537004 ATP5JP18859 108 aa14.25□□□□□ -0.13
CLIP1-208ENST00000537004 HSPA4P34932 840 aa14.25□□□□□ -0.13
CLIP1-208ENST00000537004 KIAA1211Q6ZU35 1233 aa14.25□□□□□ -0.13
CLIP1-208ENST00000537004 SH3BP5LQ7L8J4 393 aa14.25□□□□□ -0.13
CLIP1-208ENST00000537004 SLF2Q8IX21 1173 aa14.25□□□□□ -0.13
CLIP1-208ENST00000537004 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.25□□□□□ -0.13
CLIP1-208ENST00000537004 WRNIP1Q96S55 665 aa14.25□□□□□ -0.13
CLIP1-208ENST00000537004 PRDM10Q9NQV6 1147 aa14.25□□□□□ -0.13
CLIP1-208ENST00000537004 IDH1O75874 414 aaKnown RBP14.24□□□□□ -0.13
CLIP1-208ENST00000537004 NEK4P51957 841 aa14.24□□□□□ -0.13
CLIP1-208ENST00000537004 NAA16Q6N069 864 aaPredicted RBP14.24□□□□□ -0.13
CLIP1-208ENST00000537004 TNS4Q8IZW8 715 aa14.24□□□□□ -0.13
CLIP1-208ENST00000537004 WNK4Q96J92 1243 aa14.24□□□□□ -0.13
CLIP1-208ENST00000537004 IDI2Q9BXS1 227 aa14.24□□□□□ -0.13
CLIP1-208ENST00000537004 FOXD4L1Q9NU39 408 aa14.24□□□□□ -0.13
CLIP1-208ENST00000537004 AATFQ9NY61 560 aaKnown RBP eCLIP14.24□□□□□ -0.13
CLIP1-208ENST00000537004 CIZ1Q9ULV3 898 aaPredicted RBP14.24□□□□□ -0.13
CLIP1-208ENST00000537004 MYH7P12883 1935 aa14.24□□□□□ -0.13
CLIP1-208ENST00000537004 MYH2Q9UKX2 1941 aa14.24□□□□□ -0.13
CLIP1-208ENST00000537004 DDTLA6NHG4 134 aaPredicted RBP14.24□□□□□ -0.13
CLIP1-208ENST00000537004 INPP5BP32019 993 aa14.24□□□□□ -0.13
CLIP1-208ENST00000537004 MAP3K9P80192 1104 aa14.24□□□□□ -0.13
CLIP1-208ENST00000537004 OPTNQ96CV9 577 aa14.24□□□□□ -0.13
CLIP1-208ENST00000537004 EDC3Q96F86 508 aaKnown RBP14.24□□□□□ -0.13
CLIP1-208ENST00000537004 CA12O43570 354 aa14.23□□□□□ -0.13
CLIP1-208ENST00000537004 GSTO1P78417 241 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms