RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 GREB1LQ9C091 1923 aaPredicted RBP6.23□□□□□ -1.41
USH1C-210ENST00000534556 ZNFX1Q9P2E3 1918 aaKnown RBP6.23□□□□□ -1.41
USH1C-210ENST00000534556 MYH4Q9Y623 1939 aa6.23□□□□□ -1.41
USH1C-210ENST00000534556 MAST3O60307 1309 aa6.23□□□□□ -1.41
USH1C-210ENST00000534556 COL11A1P12107 1806 aaPredicted RBP6.22□□□□□ -1.41
USH1C-210ENST00000534556 SMIM22K7EJ46 135 aa6.22□□□□□ -1.41
USH1C-210ENST00000534556 MYO1BO43795 1136 aa6.22□□□□□ -1.41
USH1C-210ENST00000534556 TBC1D8O95759 1140 aa6.22□□□□□ -1.41
USH1C-210ENST00000534556 UQCRFS1P1P0C7P4 283 aa6.22□□□□□ -1.41
USH1C-210ENST00000534556 MS4A1P11836 297 aa6.22□□□□□ -1.41
USH1C-210ENST00000534556 MAP3K10Q02779 954 aa6.22□□□□□ -1.41
USH1C-210ENST00000534556 MOGSQ13724 837 aa6.22□□□□□ -1.41
USH1C-210ENST00000534556 SUPT20HL1Q3ZLR7 823 aa6.22□□□□□ -1.41
USH1C-210ENST00000534556 TTC39AQ5SRH9 613 aa6.22□□□□□ -1.41
USH1C-210ENST00000534556 GORABQ5T7V8 394 aa6.22□□□□□ -1.41
USH1C-210ENST00000534556 TSHZ3Q63HK5 1081 aa6.22□□□□□ -1.41
USH1C-210ENST00000534556 ARMC9Q7Z3E5 817 aa6.22□□□□□ -1.41
USH1C-210ENST00000534556 CCDC84Q86UT8 332 aaPredicted RBP6.22□□□□□ -1.41
USH1C-210ENST00000534556 DZIP1Q86YF9 867 aaKnown RBP6.22□□□□□ -1.41
USH1C-210ENST00000534556 OPTNQ96CV9 577 aa6.22□□□□□ -1.41
USH1C-210ENST00000534556 KIF1BPQ96EK5 621 aa6.22□□□□□ -1.41
USH1C-210ENST00000534556 SLC10A4Q96EP9 437 aa6.22□□□□□ -1.41
USH1C-210ENST00000534556 BCL11AQ9H165 835 aa6.22□□□□□ -1.41
USH1C-210ENST00000534556 DCTPP1Q9H773 170 aa6.22□□□□□ -1.41
USH1C-210ENST00000534556 SMCHD1A6NHR9 2005 aa6.21□□□□□ -1.41
USH1C-210ENST00000534556 PDE4DIPQ5VU43 2346 aa6.21□□□□□ -1.41
USH1C-210ENST00000534556 TCRBV5S4A2TA0A5A2 114 aa6.21□□□□□ -1.42
USH1C-210ENST00000534556 TESPA1A2RU30 521 aaPredicted RBP6.21□□□□□ -1.42
USH1C-210ENST00000534556 PPP1R12BO60237 982 aaPredicted RBP6.21□□□□□ -1.42
USH1C-210ENST00000534556 SLC34A2O95436 690 aa6.21□□□□□ -1.42
USH1C-210ENST00000534556 NF2P35240 595 aa6.21□□□□□ -1.42
USH1C-210ENST00000534556 PPP4CP60510 307 aa6.21□□□□□ -1.42
USH1C-210ENST00000534556 MAP3K9P80192 1104 aa6.21□□□□□ -1.42
USH1C-210ENST00000534556 PICALMQ13492 652 aa6.21□□□□□ -1.42
USH1C-210ENST00000534556 TNFAIP1Q13829 316 aa6.21□□□□□ -1.42
USH1C-210ENST00000534556 ANKRD13AQ8IZ07 590 aa6.21□□□□□ -1.42
USH1C-210ENST00000534556 TNS4Q8IZW8 715 aa6.21□□□□□ -1.42
USH1C-210ENST00000534556 FAM43AQ8N2R8 423 aa6.21□□□□□ -1.42
USH1C-210ENST00000534556 BRI3BPQ8WY22 251 aa6.21□□□□□ -1.42
USH1C-210ENST00000534556 AIDAQ96BJ3 306 aa6.21□□□□□ -1.42
USH1C-210ENST00000534556 WRNIP1Q96S55 665 aa6.21□□□□□ -1.42
USH1C-210ENST00000534556 DNAJC18Q9H819 358 aa6.21□□□□□ -1.42
USH1C-210ENST00000534556 AATFQ9NY61 560 aaKnown RBP eCLIP6.21□□□□□ -1.42
USH1C-210ENST00000534556 RAI14Q9P0K7 980 aa6.21□□□□□ -1.42
USH1C-210ENST00000534556 LRP2BPQ9P2M1 347 aa6.21□□□□□ -1.42
USH1C-210ENST00000534556 SALL3Q9BXA9 1300 aa6.21□□□□□ -1.42
USH1C-210ENST00000534556 COL2A1P02458 1487 aaPredicted RBP6.21□□□□□ -1.42
USH1C-210ENST00000534556 RBBP6Q7Z6E9 1792 aaKnown RBP6.21□□□□□ -1.42
USH1C-210ENST00000534556 KIAA0100Q14667 2235 aaKnown RBP6.21□□□□□ -1.42
USH1C-210ENST00000534556 SPDYE5A6NIY4 337 aa6.2□□□□□ -1.42
USH1C-210ENST00000534556 IRF6O14896 467 aa6.2□□□□□ -1.42
USH1C-210ENST00000534556 ENTPD3O75355 529 aa6.2□□□□□ -1.42
USH1C-210ENST00000534556 IREB2P48200 963 aaKnown RBP6.2□□□□□ -1.42
USH1C-210ENST00000534556 TNNI2P48788 182 aa6.2□□□□□ -1.42
USH1C-210ENST00000534556 DGKZQ13574 1117 aa6.2□□□□□ -1.42
USH1C-210ENST00000534556 CCDC158Q5M9N0 1113 aa6.2□□□□□ -1.42
USH1C-210ENST00000534556 SPTY2D1Q68D10 685 aaPredicted RBP6.2□□□□□ -1.42
USH1C-210ENST00000534556 NAA16Q6N069 864 aaPredicted RBP6.2□□□□□ -1.42
USH1C-210ENST00000534556 IFNL1Q8IU54 200 aa6.2□□□□□ -1.42
USH1C-210ENST00000534556 ZGPATQ8N5A5 531 aaKnown RBP6.2□□□□□ -1.42
USH1C-210ENST00000534556 MAGEB6Q8N7X4 407 aa6.2□□□□□ -1.42
USH1C-210ENST00000534556 MIGA1Q8NAN2 632 aa6.2□□□□□ -1.42
USH1C-210ENST00000534556 EXOC6Q8TAG9 804 aa6.2□□□□□ -1.42
USH1C-210ENST00000534556 TGFBRAP1Q8WUH2 860 aa6.2□□□□□ -1.42
USH1C-210ENST00000534556 OTUD5Q96G74 571 aa6.2□□□□□ -1.42
USH1C-210ENST00000534556 RIOK1Q9BRS2 568 aaKnown RBP6.2□□□□□ -1.42
USH1C-210ENST00000534556 BOLA2Q9H3K6 86 aa6.2□□□□□ -1.42
USH1C-210ENST00000534556 GOLIM4O00461 696 aa6.19□□□□□ -1.42
USH1C-210ENST00000534556 RAB11FIP3O75154 756 aa6.19□□□□□ -1.42
USH1C-210ENST00000534556 NPM3O75607 178 aaKnown RBP6.19□□□□□ -1.42
USH1C-210ENST00000534556 IDH1O75874 414 aaKnown RBP6.19□□□□□ -1.42
USH1C-210ENST00000534556 IGHDP01880 384 aa6.19□□□□□ -1.42
USH1C-210ENST00000534556 ZBTB48P10074 688 aaPredicted RBP6.19□□□□□ -1.42
USH1C-210ENST00000534556 PDE6AP16499 860 aa6.19□□□□□ -1.42
USH1C-210ENST00000534556 ATP5JP18859 108 aa6.19□□□□□ -1.42
USH1C-210ENST00000534556 CYP7A1P22680 504 aa6.19□□□□□ -1.42
USH1C-210ENST00000534556 SLC4A8Q2Y0W8 1093 aa6.19□□□□□ -1.42
USH1C-210ENST00000534556 NOL9Q5SY16 702 aaKnown RBP6.19□□□□□ -1.42
USH1C-210ENST00000534556 GPAT2Q6NUI2 795 aa6.19□□□□□ -1.42
USH1C-210ENST00000534556 METTL16Q86W50 562 aaKnown RBP6.19□□□□□ -1.42
USH1C-210ENST00000534556 ERC1Q8IUD2 1116 aa6.19□□□□□ -1.42
USH1C-210ENST00000534556 MAPKAPK5Q8IW41 473 aa6.19□□□□□ -1.42
USH1C-210ENST00000534556 TEX11Q8IYF3 940 aa6.19□□□□□ -1.42
USH1C-210ENST00000534556 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.19□□□□□ -1.42
USH1C-210ENST00000534556 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.19□□□□□ -1.42
USH1C-210ENST00000534556 ZNF296Q8WUU4 475 aaPredicted RBP6.19□□□□□ -1.42
USH1C-210ENST00000534556 HAUS7Q99871 368 aa6.19□□□□□ -1.42
USH1C-210ENST00000534556 CFHR5Q9BXR6 569 aa6.19□□□□□ -1.42
USH1C-210ENST00000534556 ZNF341Q9BYN7 854 aa6.19□□□□□ -1.42
USH1C-210ENST00000534556 OSBPL5Q9H0X9 879 aaPredicted RBP6.19□□□□□ -1.42
USH1C-210ENST00000534556 SAGE1Q9NXZ1 904 aa6.19□□□□□ -1.42
USH1C-210ENST00000534556 TMOD2Q9NZR1 351 aa6.19□□□□□ -1.42
USH1C-210ENST00000534556 SAP30BPQ9UHR5 308 aaKnown RBP6.19□□□□□ -1.42
USH1C-210ENST00000534556 PALD1Q9ULE6 856 aa6.19□□□□□ -1.42
USH1C-210ENST00000534556 SUPT16HQ9Y5B9 1047 aaKnown RBP6.19□□□□□ -1.42
USH1C-210ENST00000534556 FLT1P17948 1338 aa6.19□□□□□ -1.42
USH1C-210ENST00000534556 CCL15-CCL14A0A0B4J2E2 113 aa6.18□□□□□ -1.42
USH1C-210ENST00000534556 MANSC4A6NHS7 340 aaPredicted RBP6.18□□□□□ -1.42
USH1C-210ENST00000534556 UNCXA6NJT0 531 aa6.18□□□□□ -1.42
USH1C-210ENST00000534556 BTBD19C9JJ37 291 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms