RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 BABAM1Q9NWV8 329 aa8.38□□□□□ -1.07
CD44-237ENST00000534082 ZNF70Q9UC06 446 aaPredicted RBP8.38□□□□□ -1.07
CD44-237ENST00000534082 DDX60LQ5H9U9 1706 aaKnown RBP8.37□□□□□ -1.07
CD44-237ENST00000534082 MAPK8IP3Q9UPT6 1336 aa8.37□□□□□ -1.07
CD44-237ENST00000534082 TCP10L2B9ZVM9 353 aa8.37□□□□□ -1.07
CD44-237ENST00000534082 BCRP11274 1271 aa8.37□□□□□ -1.07
CD44-237ENST00000534082 PPP2R1AP30153 589 aa8.37□□□□□ -1.07
CD44-237ENST00000534082 PSEN2P49810 448 aa8.37□□□□□ -1.07
CD44-237ENST00000534082 MDM2Q00987 491 aaPredicted RBP8.37□□□□□ -1.07
CD44-237ENST00000534082 MAP3K12Q12852 859 aa8.37□□□□□ -1.07
CD44-237ENST00000534082 IRF5Q13568 498 aa8.37□□□□□ -1.07
CD44-237ENST00000534082 TJAP1Q5JTD0 557 aa8.37□□□□□ -1.07
CD44-237ENST00000534082 ZNF454Q8N9F8 522 aa8.37□□□□□ -1.07
CD44-237ENST00000534082 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.37□□□□□ -1.07
CD44-237ENST00000534082 CCDC191Q8NCU4 936 aa8.37□□□□□ -1.07
CD44-237ENST00000534082 MYLIPQ8WY64 445 aa8.37□□□□□ -1.07
CD44-237ENST00000534082 ZKSCAN4Q969J2 545 aaPredicted RBP8.37□□□□□ -1.07
CD44-237ENST00000534082 PARK7Q99497 189 aaKnown RBP8.37□□□□□ -1.07
CD44-237ENST00000534082 MYD88Q99836 296 aa8.37□□□□□ -1.07
CD44-237ENST00000534082 C11orf49Q9H6J7 331 aa8.37□□□□□ -1.07
CD44-237ENST00000534082 GREM2Q9H772 168 aa8.37□□□□□ -1.07
CD44-237ENST00000534082 TDRD3Q9H7E2 651 aaKnown RBP8.37□□□□□ -1.07
CD44-237ENST00000534082 DBF4Q9UBU7 674 aaPredicted RBP8.37□□□□□ -1.07
CD44-237ENST00000534082 KCNJ4P48050 445 aa8.36□□□□□ -1.07
CD44-237ENST00000534082 TNNI2P48788 182 aa8.36□□□□□ -1.07
CD44-237ENST00000534082 FKBP1AP62942 108 aaKnown RBP8.36□□□□□ -1.07
CD44-237ENST00000534082 RIC3Q7Z5B4 369 aa8.36□□□□□ -1.07
CD44-237ENST00000534082 SPRYD3Q8NCJ5 442 aa8.36□□□□□ -1.07
CD44-237ENST00000534082 ANKRD2Q9GZV1 360 aa8.36□□□□□ -1.07
CD44-237ENST00000534082 HYPKQ9NX55 129 aa8.36□□□□□ -1.07
CD44-237ENST00000534082 CWC25Q9NXE8 425 aaPredicted RBP8.36□□□□□ -1.07
CD44-237ENST00000534082 JAG2Q9Y219 1238 aa8.36□□□□□ -1.07
CD44-237ENST00000534082 MGAMO43451 1857 aa8.36□□□□□ -1.07
CD44-237ENST00000534082 TNPO2O14787 897 aaKnown RBP8.35□□□□□ -1.07
CD44-237ENST00000534082 CYP2C8P10632 490 aa8.35□□□□□ -1.07
CD44-237ENST00000534082 FOSL2P15408 326 aa8.35□□□□□ -1.07
CD44-237ENST00000534082 IGHMBP2P38935 993 aaKnown RBP8.35□□□□□ -1.07
CD44-237ENST00000534082 PPATQ06203 517 aa8.35□□□□□ -1.07
CD44-237ENST00000534082 MOGSQ13724 837 aa8.35□□□□□ -1.07
CD44-237ENST00000534082 MFSD10Q14728 455 aa8.35□□□□□ -1.07
CD44-237ENST00000534082 TTLL11Q8NHH1 800 aa8.35□□□□□ -1.07
CD44-237ENST00000534082 KCNK17Q96T54 332 aa8.35□□□□□ -1.07
CD44-237ENST00000534082 PFASO15067 1338 aa8.34□□□□□ -1.07
CD44-237ENST00000534082 HOXB7P09629 217 aa8.34□□□□□ -1.07
CD44-237ENST00000534082 IL1R1P14778 569 aa8.34□□□□□ -1.07
CD44-237ENST00000534082 DMRTA1Q5VZB9 504 aa8.34□□□□□ -1.07
CD44-237ENST00000534082 ZNF804AQ7Z570 1209 aa8.34□□□□□ -1.07
CD44-237ENST00000534082 SEMA6BQ9H3T3 888 aa8.34□□□□□ -1.07
CD44-237ENST00000534082 SERPINA10Q9UK55 444 aa8.34□□□□□ -1.07
CD44-237ENST00000534082 KCNH4Q9UQ05 1017 aa8.34□□□□□ -1.07
CD44-237ENST00000534082 PIEZO1Q92508 2521 aa8.34□□□□□ -1.07
CD44-237ENST00000534082 SYNGAP1Q96PV0 1343 aa8.33□□□□□ -1.08
CD44-237ENST00000534082 MYH3P11055 1940 aa8.33□□□□□ -1.08
CD44-237ENST00000534082 BDP1A6H8Y1 2624 aa8.33□□□□□ -1.08
CD44-237ENST00000534082 SNAP23O00161 211 aa8.33□□□□□ -1.08
CD44-237ENST00000534082 HMGCRP04035 888 aa8.33□□□□□ -1.08
CD44-237ENST00000534082 CHRNDQ07001 517 aa8.33□□□□□ -1.08
CD44-237ENST00000534082 DZIP1LQ8IYY4 767 aaKnown RBP8.33□□□□□ -1.08
CD44-237ENST00000534082 EMILIN3Q9NT22 766 aa8.33□□□□□ -1.08
CD44-237ENST00000534082 TTF2Q9UNY4 1162 aaKnown RBP8.33□□□□□ -1.08
CD44-237ENST00000534082 INPP5BP32019 993 aa8.32□□□□□ -1.08
CD44-237ENST00000534082 CRKP46108 304 aa8.32□□□□□ -1.08
CD44-237ENST00000534082 CACNB3P54284 484 aa8.32□□□□□ -1.08
CD44-237ENST00000534082 RIPK4P57078 832 aa8.32□□□□□ -1.08
CD44-237ENST00000534082 LRRC26Q2I0M4 334 aa8.32□□□□□ -1.08
CD44-237ENST00000534082 DCAF15Q66K64 600 aa8.32□□□□□ -1.08
CD44-237ENST00000534082 GPAT2Q6NUI2 795 aa8.32□□□□□ -1.08
CD44-237ENST00000534082 ADGRD1Q6QNK2 874 aa8.32□□□□□ -1.08
CD44-237ENST00000534082 C15orf52Q6ZUT6 534 aaKnown RBP8.32□□□□□ -1.08
CD44-237ENST00000534082 USP38Q8NB14 1042 aa8.32□□□□□ -1.08
CD44-237ENST00000534082 HOOK2Q96ED9 719 aa8.32□□□□□ -1.08
CD44-237ENST00000534082 MPHOSPH8Q99549 860 aa8.32□□□□□ -1.08
CD44-237ENST00000534082 LBHD1Q9BQE6 289 aaPredicted RBP8.32□□□□□ -1.08
CD44-237ENST00000534082 TTYH1Q9H313 450 aaPredicted RBP8.32□□□□□ -1.08
CD44-237ENST00000534082 PHAXQ9H814 394 aaKnown RBP8.32□□□□□ -1.08
CD44-237ENST00000534082 HMX1Q9NP08 348 aaPredicted RBP8.32□□□□□ -1.08
CD44-237ENST00000534082 OGDHLQ9ULD0 1010 aa8.32□□□□□ -1.08
CD44-237ENST00000534082 DNAH12Q6ZR08 3092 aa8.32□□□□□ -1.08
CD44-237ENST00000534082 CHL1O00533 1208 aa8.31□□□□□ -1.08
CD44-237ENST00000534082 COL6A1P12109 1028 aa8.31□□□□□ -1.08
CD44-237ENST00000534082 ITGA6P23229 1130 aa8.31□□□□□ -1.08
CD44-237ENST00000534082 LMOD3Q0VAK6 560 aa8.31□□□□□ -1.08
CD44-237ENST00000534082 MFSD14BQ5SR56 506 aa8.31□□□□□ -1.08
CD44-237ENST00000534082 COA7Q96BR5 231 aa8.31□□□□□ -1.08
CD44-237ENST00000534082 METTL22Q9BUU2 404 aaPredicted RBP8.31□□□□□ -1.08
CD44-237ENST00000534082 ZNF341Q9BYN7 854 aa8.31□□□□□ -1.08
CD44-237ENST00000534082 LAS1LQ9Y4W2 734 aaKnown RBP8.31□□□□□ -1.08
CD44-237ENST00000534082 RPAP1Q9BWH6 1393 aaPredicted RBP8.31□□□□□ -1.08
CD44-237ENST00000534082 A0A1B0GUL6 1792 aa8.3□□□□□ -1.08
CD44-237ENST00000534082 MAST2Q6P0Q8 1798 aa8.3□□□□□ -1.08
CD44-237ENST00000534082 TAF5LO75529 589 aa8.3□□□□□ -1.08
CD44-237ENST00000534082 TRIM32Q13049 653 aa8.3□□□□□ -1.08
CD44-237ENST00000534082 ADAMTS19Q8TE59 1207 aa8.3□□□□□ -1.08
CD44-237ENST00000534082 SMCR8Q8TEV9 937 aaPredicted RBP8.3□□□□□ -1.08
CD44-237ENST00000534082 PNNQ9H307 717 aaKnown RBP8.3□□□□□ -1.08
CD44-237ENST00000534082 NCOR1O75376 2440 aa8.3□□□□□ -1.08
CD44-237ENST00000534082 FOSBP53539 338 aa8.29□□□□□ -1.08
CD44-237ENST00000534082 SMAD3P84022 425 aaKnown RBP8.29□□□□□ -1.08
CD44-237ENST00000534082 DUSP27Q5VZP5 1158 aa8.29□□□□□ -1.08
CD44-237ENST00000534082 MIGA2Q7L4E1 593 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms