RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 PDE6AP16499 860 aa15.77■□□□□ 0.12
VPS28-216ENST00000533806 DYNLL1P63167 89 aaKnown RBP15.77■□□□□ 0.12
VPS28-216ENST00000533806 MAP3K9P80192 1104 aa15.77■□□□□ 0.12
VPS28-216ENST00000533806 SLC9C2Q5TAH2 1124 aa15.77■□□□□ 0.12
VPS28-216ENST00000533806 ANKRD45Q5TZF3 282 aa15.77■□□□□ 0.12
VPS28-216ENST00000533806 PI4K2BQ8TCG2 481 aa15.77■□□□□ 0.12
VPS28-216ENST00000533806 RIOK1Q9BRS2 568 aaKnown RBP15.77■□□□□ 0.12
VPS28-216ENST00000533806 DOCK2Q92608 1830 aa15.77■□□□□ 0.11
VPS28-216ENST00000533806 MAST2Q6P0Q8 1798 aa15.77■□□□□ 0.11
VPS28-216ENST00000533806 COL2A1P02458 1487 aaPredicted RBP15.77■□□□□ 0.11
VPS28-216ENST00000533806 FOXN1O15353 648 aa15.76■□□□□ 0.11
VPS28-216ENST00000533806 PLCG2P16885 1265 aa15.76■□□□□ 0.11
VPS28-216ENST00000533806 GJA5P36382 358 aa15.76■□□□□ 0.11
VPS28-216ENST00000533806 IRX6P78412 446 aaPredicted RBP15.76■□□□□ 0.11
VPS28-216ENST00000533806 PICALMQ13492 652 aa15.76■□□□□ 0.11
VPS28-216ENST00000533806 VGLL4Q14135 290 aa15.76■□□□□ 0.11
VPS28-216ENST00000533806 TSHZ3Q63HK5 1081 aa15.76■□□□□ 0.11
VPS28-216ENST00000533806 DCAF15Q66K64 600 aa15.76■□□□□ 0.11
VPS28-216ENST00000533806 MIGA2Q7L4E1 593 aa15.76■□□□□ 0.11
VPS28-216ENST00000533806 TEX11Q8IYF3 940 aa15.76■□□□□ 0.11
VPS28-216ENST00000533806 SLC10A4Q96EP9 437 aa15.76■□□□□ 0.11
VPS28-216ENST00000533806 OSBPL5Q9H0X9 879 aaPredicted RBP15.76■□□□□ 0.11
VPS28-216ENST00000533806 STAP2Q9UGK3 403 aa15.76■□□□□ 0.11
VPS28-216ENST00000533806 MYO5AQ9Y4I1 1855 aaKnown RBP15.76■□□□□ 0.11
VPS28-216ENST00000533806 ZNF532Q9HCE3 1301 aa15.75■□□□□ 0.11
VPS28-216ENST00000533806 PHF20L1A8MW92 1017 aa15.75■□□□□ 0.11
VPS28-216ENST00000533806 ZBTB48P10074 688 aaPredicted RBP15.75■□□□□ 0.11
VPS28-216ENST00000533806 ADD2P35612 726 aa15.75■□□□□ 0.11
VPS28-216ENST00000533806 TM4SF4P48230 202 aa15.75■□□□□ 0.11
VPS28-216ENST00000533806 CERS3Q8IU89 383 aa15.75■□□□□ 0.11
VPS28-216ENST00000533806 REM2Q8IYK8 340 aaPredicted RBP15.75■□□□□ 0.11
VPS28-216ENST00000533806 GPATCH3Q96I76 525 aa15.75■□□□□ 0.11
VPS28-216ENST00000533806 WNK4Q96J92 1243 aa15.75■□□□□ 0.11
VPS28-216ENST00000533806 NOL10Q9BSC4 688 aaKnown RBP15.75■□□□□ 0.11
VPS28-216ENST00000533806 ZNF341Q9BYN7 854 aa15.75■□□□□ 0.11
VPS28-216ENST00000533806 SNCAIPQ9Y6H5 919 aa15.75■□□□□ 0.11
VPS28-216ENST00000533806 TBC1D12O60347 775 aa15.74■□□□□ 0.11
VPS28-216ENST00000533806 SLURP2P0DP57 97 aa15.74■□□□□ 0.11
VPS28-216ENST00000533806 NUCB1Q02818 461 aa15.74■□□□□ 0.11
VPS28-216ENST00000533806 SLFNL1Q499Z3 407 aa15.74■□□□□ 0.11
VPS28-216ENST00000533806 METTL16Q86W50 562 aaKnown RBP15.74■□□□□ 0.11
VPS28-216ENST00000533806 MIGA1Q8NAN2 632 aa15.74■□□□□ 0.11
VPS28-216ENST00000533806 TGFBRAP1Q8WUH2 860 aa15.74■□□□□ 0.11
VPS28-216ENST00000533806 ZKSCAN4Q969J2 545 aaPredicted RBP15.74■□□□□ 0.11
VPS28-216ENST00000533806 WRNIP1Q96S55 665 aa15.74■□□□□ 0.11
VPS28-216ENST00000533806 FLT1P17948 1338 aa15.73■□□□□ 0.11
VPS28-216ENST00000533806 CHGBP05060 677 aa15.73■□□□□ 0.11
VPS28-216ENST00000533806 MX1P20591 662 aa15.73■□□□□ 0.11
VPS28-216ENST00000533806 INPP5BP32019 993 aa15.73■□□□□ 0.11
VPS28-216ENST00000533806 UBE3CQ15386 1083 aa15.73■□□□□ 0.11
VPS28-216ENST00000533806 NOL9Q5SY16 702 aaKnown RBP15.73■□□□□ 0.11
VPS28-216ENST00000533806 ELP3Q9H9T3 547 aa15.73■□□□□ 0.11
VPS28-216ENST00000533806 TESPA1A2RU30 521 aaPredicted RBP15.72■□□□□ 0.11
VPS28-216ENST00000533806 SPDYE5A6NIY4 337 aa15.72■□□□□ 0.11
VPS28-216ENST00000533806 CA12O43570 354 aa15.72■□□□□ 0.11
VPS28-216ENST00000533806 GLRX3O76003 335 aaKnown RBP15.72■□□□□ 0.11
VPS28-216ENST00000533806 MAPKAPK5Q8IW41 473 aa15.72■□□□□ 0.11
VPS28-216ENST00000533806 ZSCAN29Q8IWY8 852 aaPredicted RBP15.72■□□□□ 0.11
VPS28-216ENST00000533806 KBTBD3Q8NAB2 608 aa15.72■□□□□ 0.11
VPS28-216ENST00000533806 CNKSR2Q8WXI2 1034 aa15.72■□□□□ 0.11
VPS28-216ENST00000533806 OPTNQ96CV9 577 aa15.72■□□□□ 0.11
VPS28-216ENST00000533806 DHX36Q9H2U1 1008 aaKnown RBP15.72■□□□□ 0.11
VPS28-216ENST00000533806 MAGEB6P1A0A0J9YX57 407 aa15.71■□□□□ 0.11
VPS28-216ENST00000533806 ERC2O15083 957 aa15.71■□□□□ 0.11
VPS28-216ENST00000533806 HSPA8P11142 646 aaKnown RBP15.71■□□□□ 0.11
VPS28-216ENST00000533806 PDE1AP54750 535 aa15.71■□□□□ 0.11
VPS28-216ENST00000533806 CHD1LQ86WJ1 897 aa15.71■□□□□ 0.11
VPS28-216ENST00000533806 AIDAQ96BJ3 306 aa15.71■□□□□ 0.11
VPS28-216ENST00000533806 MS4A4AQ96JQ5 239 aa15.71■□□□□ 0.11
VPS28-216ENST00000533806 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.71■□□□□ 0.112e-7■■■■□ 23.7
VPS28-216ENST00000533806 RNF186Q9NXI6 227 aa15.71■□□□□ 0.11
VPS28-216ENST00000533806 SAGE1Q9NXZ1 904 aa15.71■□□□□ 0.11
VPS28-216ENST00000533806 PI4KBQ9UBF8 816 aa15.71■□□□□ 0.11
VPS28-216ENST00000533806 CSADQ9Y600 493 aa15.71■□□□□ 0.11
VPS28-216ENST00000533806 OTOFQ9HC10 1997 aa15.71■□□□□ 0.1
VPS28-216ENST00000533806 CTCFP49711 727 aaPredicted RBP15.7■□□□□ 0.1
VPS28-216ENST00000533806 INHBEP58166 350 aa15.7■□□□□ 0.1
VPS28-216ENST00000533806 MKRN3Q13064 507 aaKnown RBP15.7■□□□□ 0.1
VPS28-216ENST00000533806 ERO1BQ86YB8 467 aa15.7■□□□□ 0.1
VPS28-216ENST00000533806 LNPKQ9C0E8 428 aa15.7■□□□□ 0.1
VPS28-216ENST00000533806 PALD1Q9ULE6 856 aa15.7■□□□□ 0.1
VPS28-216ENST00000533806 MANSC4A6NHS7 340 aaPredicted RBP15.69■□□□□ 0.1
VPS28-216ENST00000533806 RRP1BQ14684 758 aaKnown RBP15.69■□□□□ 0.1
VPS28-216ENST00000533806 B4GALNT3Q6L9W6 998 aa15.69■□□□□ 0.1
VPS28-216ENST00000533806 ZSCAN25Q6NSZ9 544 aa15.69■□□□□ 0.1
VPS28-216ENST00000533806 FOXP4Q8IVH2 680 aaPredicted RBP15.69■□□□□ 0.1
VPS28-216ENST00000533806 LCORLQ8N3X6 602 aa15.69■□□□□ 0.1
VPS28-216ENST00000533806 PTPN18Q99952 460 aa15.69■□□□□ 0.1
VPS28-216ENST00000533806 BEGAINQ9BUH8 593 aa15.69■□□□□ 0.1
VPS28-216ENST00000533806 CFHR5Q9BXR6 569 aa15.69■□□□□ 0.1
VPS28-216ENST00000533806 PUS7LQ9H0K6 701 aaKnown RBP15.69■□□□□ 0.1
VPS28-216ENST00000533806 OSBPL3Q9H4L5 887 aa15.69■□□□□ 0.1
VPS28-216ENST00000533806 DNAJC18Q9H819 358 aa15.69■□□□□ 0.1
VPS28-216ENST00000533806 HERC5Q9UII4 1024 aaKnown RBP15.69■□□□□ 0.1
VPS28-216ENST00000533806 FAM196BA6NMK8 535 aa15.68■□□□□ 0.1
VPS28-216ENST00000533806 IRF6O14896 467 aa15.68■□□□□ 0.1
VPS28-216ENST00000533806 CTNND1O60716 968 aaKnown RBP15.68■□□□□ 0.1
VPS28-216ENST00000533806 LBX1P52954 281 aa15.68■□□□□ 0.1
VPS28-216ENST00000533806 PPATQ06203 517 aa15.68■□□□□ 0.1
VPS28-216ENST00000533806 SREBF2Q12772 1141 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms