RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 TEX11Q8IYF3 940 aa18.25■□□□□ 0.51
CPSF1-208ENST00000532560 ANKRD13AQ8IZ07 590 aa18.25■□□□□ 0.51
CPSF1-208ENST00000532560 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.25■□□□□ 0.51
CPSF1-208ENST00000532560 SH3RF3Q8TEJ3 882 aaPredicted RBP18.25■□□□□ 0.51
CPSF1-208ENST00000532560 EDC3Q96F86 508 aaKnown RBP18.25■□□□□ 0.51
CPSF1-208ENST00000532560 WBP1LQ9NX94 342 aa18.25■□□□□ 0.51
CPSF1-208ENST00000532560 SALL3Q9BXA9 1300 aa18.24■□□□□ 0.51
CPSF1-208ENST00000532560 IGHDP01880 384 aa18.24■□□□□ 0.51
CPSF1-208ENST00000532560 SLC9C2Q5TAH2 1124 aa18.24■□□□□ 0.51
CPSF1-208ENST00000532560 OTUD7AQ8TE49 926 aaPredicted RBP18.24■□□□□ 0.51
CPSF1-208ENST00000532560 ZIC5Q96T25 663 aa18.24■□□□□ 0.51
CPSF1-208ENST00000532560 OSBPL5Q9H0X9 879 aaPredicted RBP18.24■□□□□ 0.51
CPSF1-208ENST00000532560 MYH7P12883 1935 aa18.23■□□□□ 0.51
CPSF1-208ENST00000532560 AK9Q5TCS8 1911 aa18.23■□□□□ 0.51
CPSF1-208ENST00000532560 LAMB1P07942 1786 aa18.23■□□□□ 0.51
CPSF1-208ENST00000532560 ERC2O15083 957 aa18.23■□□□□ 0.51
CPSF1-208ENST00000532560 MX1P20591 662 aa18.23■□□□□ 0.51
CPSF1-208ENST00000532560 TSHZ3Q63HK5 1081 aa18.23■□□□□ 0.51
CPSF1-208ENST00000532560 SH3BP5LQ7L8J4 393 aa18.23■□□□□ 0.51
CPSF1-208ENST00000532560 MIGA1Q8NAN2 632 aa18.23■□□□□ 0.51
CPSF1-208ENST00000532560 CLMNQ96JQ2 1002 aa18.23■□□□□ 0.51
CPSF1-208ENST00000532560 CSRNP1Q96S65 589 aa18.23■□□□□ 0.51
CPSF1-208ENST00000532560 ZNF341Q9BYN7 854 aa18.23■□□□□ 0.51
CPSF1-208ENST00000532560 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.23■□□□□ 0.517e-14■■■■□ 21.3
CPSF1-208ENST00000532560 TCRBV5S4A2TA0A5A2 114 aa18.22■□□□□ 0.51
CPSF1-208ENST00000532560 DDTLA6NHG4 134 aaPredicted RBP18.22■□□□□ 0.51
CPSF1-208ENST00000532560 MAP3K9P80192 1104 aa18.22■□□□□ 0.51
CPSF1-208ENST00000532560 SPRYD7Q5W111 196 aa18.22■□□□□ 0.51
CPSF1-208ENST00000532560 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.22■□□□□ 0.51
CPSF1-208ENST00000532560 REM2Q8IYK8 340 aaPredicted RBP18.22■□□□□ 0.51
CPSF1-208ENST00000532560 PI4K2BQ8TCG2 481 aa18.22■□□□□ 0.51
CPSF1-208ENST00000532560 SLC10A4Q96EP9 437 aa18.22■□□□□ 0.51
CPSF1-208ENST00000532560 WRNIP1Q96S55 665 aa18.22■□□□□ 0.51
CPSF1-208ENST00000532560 FLT1P17948 1338 aa18.22■□□□□ 0.51
CPSF1-208ENST00000532560 ZNF532Q9HCE3 1301 aa18.22■□□□□ 0.51
CPSF1-208ENST00000532560 GLRX3O76003 335 aaKnown RBP18.21■□□□□ 0.51
CPSF1-208ENST00000532560 ZBTB48P10074 688 aaPredicted RBP18.21■□□□□ 0.51
CPSF1-208ENST00000532560 ADD2P35612 726 aa18.21■□□□□ 0.51
CPSF1-208ENST00000532560 DYNLL1P63167 89 aaKnown RBP18.21■□□□□ 0.51
CPSF1-208ENST00000532560 KIF23Q02241 960 aaPredicted RBP18.21■□□□□ 0.51
CPSF1-208ENST00000532560 MAP3K10Q02779 954 aa18.21■□□□□ 0.51
CPSF1-208ENST00000532560 VGLL4Q14135 290 aa18.21■□□□□ 0.51
CPSF1-208ENST00000532560 MIGA2Q7L4E1 593 aa18.21■□□□□ 0.51
CPSF1-208ENST00000532560 ZSCAN29Q8IWY8 852 aaPredicted RBP18.21■□□□□ 0.51
CPSF1-208ENST00000532560 AIDAQ96BJ3 306 aa18.21■□□□□ 0.51
CPSF1-208ENST00000532560 WNK4Q96J92 1243 aa18.21■□□□□ 0.51
CPSF1-208ENST00000532560 RIOK1Q9BRS2 568 aaKnown RBP18.21■□□□□ 0.51
CPSF1-208ENST00000532560 ZNF112Q9UJU3 913 aa18.21■□□□□ 0.51
CPSF1-208ENST00000532560 CSADQ9Y600 493 aa18.21■□□□□ 0.51
CPSF1-208ENST00000532560 PCNTO95613 3336 aa18.21■□□□□ 0.51
CPSF1-208ENST00000532560 KBTBD3Q8NAB2 608 aa18.2■□□□□ 0.5
CPSF1-208ENST00000532560 TGFBRAP1Q8WUH2 860 aa18.2■□□□□ 0.5
CPSF1-208ENST00000532560 BEGAINQ9BUH8 593 aa18.2■□□□□ 0.5
CPSF1-208ENST00000532560 DDX60LQ5H9U9 1706 aaKnown RBP18.2■□□□□ 0.5
CPSF1-208ENST00000532560 MAGEB6P1A0A0J9YX57 407 aa18.19■□□□□ 0.5
CPSF1-208ENST00000532560 CA12O43570 354 aa18.19■□□□□ 0.5
CPSF1-208ENST00000532560 NUCB1Q02818 461 aa18.19■□□□□ 0.5
CPSF1-208ENST00000532560 UBE3CQ15386 1083 aa18.19■□□□□ 0.5
CPSF1-208ENST00000532560 ZSCAN25Q6NSZ9 544 aa18.19■□□□□ 0.5
CPSF1-208ENST00000532560 DHX36Q9H2U1 1008 aaKnown RBP18.19■□□□□ 0.5
CPSF1-208ENST00000532560 ELP3Q9H9T3 547 aa18.19■□□□□ 0.5
CPSF1-208ENST00000532560 STAP2Q9UGK3 403 aa18.19■□□□□ 0.5
CPSF1-208ENST00000532560 SNCAIPQ9Y6H5 919 aa18.19■□□□□ 0.5
CPSF1-208ENST00000532560 FOXN1O15353 648 aa18.18■□□□□ 0.5
CPSF1-208ENST00000532560 TBC1D12O60347 775 aa18.18■□□□□ 0.5
CPSF1-208ENST00000532560 GJA5P36382 358 aa18.18■□□□□ 0.5
CPSF1-208ENST00000532560 NOL9Q5SY16 702 aaKnown RBP18.18■□□□□ 0.5
CPSF1-208ENST00000532560 CHD1LQ86WJ1 897 aa18.18■□□□□ 0.5
CPSF1-208ENST00000532560 MAPKAPK5Q8IW41 473 aa18.18■□□□□ 0.5
CPSF1-208ENST00000532560 LNPKQ9C0E8 428 aa18.18■□□□□ 0.5
CPSF1-208ENST00000532560 SIPA1L1O43166 1804 aa18.18■□□□□ 0.5
CPSF1-208ENST00000532560 SPDYE5A6NIY4 337 aa18.17■□□□□ 0.5
CPSF1-208ENST00000532560 INPP5BP32019 993 aa18.17■□□□□ 0.5
CPSF1-208ENST00000532560 PDE1AP54750 535 aa18.17■□□□□ 0.5
CPSF1-208ENST00000532560 SREBF2Q12772 1141 aa18.17■□□□□ 0.5
CPSF1-208ENST00000532560 MKRN3Q13064 507 aaKnown RBP18.17■□□□□ 0.5
CPSF1-208ENST00000532560 B4GALNT3Q6L9W6 998 aa18.17■□□□□ 0.5
CPSF1-208ENST00000532560 ZKSCAN4Q969J2 545 aaPredicted RBP18.17■□□□□ 0.5
CPSF1-208ENST00000532560 OPTNQ96CV9 577 aa18.17■□□□□ 0.5
CPSF1-208ENST00000532560 SAGE1Q9NXZ1 904 aa18.17■□□□□ 0.5
CPSF1-208ENST00000532560 NAV1Q8NEY1 1877 aa18.16■□□□□ 0.5
CPSF1-208ENST00000532560 MANSC4A6NHS7 340 aaPredicted RBP18.16■□□□□ 0.5
CPSF1-208ENST00000532560 PHF20L1A8MW92 1017 aa18.16■□□□□ 0.5
CPSF1-208ENST00000532560 USP5P45974 858 aa18.16■□□□□ 0.5
CPSF1-208ENST00000532560 CTCFP49711 727 aaPredicted RBP18.16■□□□□ 0.5
CPSF1-208ENST00000532560 ERO1BQ86YB8 467 aa18.16■□□□□ 0.5
CPSF1-208ENST00000532560 CRNKL1Q9BZJ0 848 aaKnown RBP18.16■□□□□ 0.5
CPSF1-208ENST00000532560 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.16■□□□□ 0.5
CPSF1-208ENST00000532560 PI4KBQ9UBF8 816 aa18.16■□□□□ 0.5
CPSF1-208ENST00000532560 HERC5Q9UII4 1024 aaKnown RBP18.16■□□□□ 0.5
CPSF1-208ENST00000532560 MYH1P12882 1939 aa18.15■□□□□ 0.5
CPSF1-208ENST00000532560 MBD4O95243 580 aa18.15■□□□□ 0.5
CPSF1-208ENST00000532560 TM4SF4P48230 202 aa18.15■□□□□ 0.5
CPSF1-208ENST00000532560 SLFNL1Q499Z3 407 aa18.15■□□□□ 0.5
CPSF1-208ENST00000532560 METTL16Q86W50 562 aaKnown RBP18.15■□□□□ 0.5
CPSF1-208ENST00000532560 LCORLQ8N3X6 602 aa18.15■□□□□ 0.5
CPSF1-208ENST00000532560 DOCK1Q14185 1865 aa18.15■□□□□ 0.5
CPSF1-208ENST00000532560 CHGBP05060 677 aa18.14■□□□□ 0.49
CPSF1-208ENST00000532560 HLA-DOAP06340 250 aa18.14■□□□□ 0.49
CPSF1-208ENST00000532560 ZFYP08048 801 aaPredicted RBP18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms