RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 PTCH2Q9Y6C5 1203 aa12.43□□□□□ -0.42
VPS28-204ENST00000526054 DOCK1Q14185 1865 aa12.42□□□□□ -0.42
VPS28-204ENST00000526054 A0A1B0GUL7 405 aa12.42□□□□□ -0.42
VPS28-204ENST00000526054 ADORA1P30542 326 aa12.42□□□□□ -0.42
VPS28-204ENST00000526054 LACTBP83111 547 aaPredicted RBP12.42□□□□□ -0.42
VPS28-204ENST00000526054 DZIP1Q86YF9 867 aaKnown RBP12.42□□□□□ -0.42
VPS28-204ENST00000526054 ZGPATQ8N5A5 531 aaKnown RBP12.42□□□□□ -0.42
VPS28-204ENST00000526054 ZNF333Q96JL9 665 aa12.42□□□□□ -0.42
VPS28-204ENST00000526054 GPR108Q9NPR9 543 aa12.42□□□□□ -0.42
VPS28-204ENST00000526054 USP40Q9NVE5 1235 aa12.42□□□□□ -0.42
VPS28-204ENST00000526054 RAB11FIP3O75154 756 aa12.41□□□□□ -0.42
VPS28-204ENST00000526054 RASGRF1Q13972 1273 aa12.41□□□□□ -0.42
VPS28-204ENST00000526054 TNNI3KQ59H18 835 aa12.41□□□□□ -0.42
VPS28-204ENST00000526054 NOL9Q5SY16 702 aaKnown RBP12.41□□□□□ -0.42
VPS28-204ENST00000526054 CCDC102BQ68D86 513 aa12.41□□□□□ -0.42
VPS28-204ENST00000526054 NBPF11Q86T75 865 aa12.41□□□□□ -0.42
VPS28-204ENST00000526054 EXOC6Q8TAG9 804 aa12.41□□□□□ -0.42
VPS28-204ENST00000526054 KIF1BPQ96EK5 621 aa12.41□□□□□ -0.42
VPS28-204ENST00000526054 NEUROD6Q96NK8 337 aa12.41□□□□□ -0.42
VPS28-204ENST00000526054 TMEM106CQ9BVX2 250 aa12.41□□□□□ -0.42
VPS28-204ENST00000526054 ARHGAP39Q9C0H5 1083 aa12.41□□□□□ -0.42
VPS28-204ENST00000526054 FAM198AQ9UFP1 575 aa12.41□□□□□ -0.42
VPS28-204ENST00000526054 PCDHB15Q9Y5E8 787 aa12.41□□□□□ -0.42
VPS28-204ENST00000526054 FPGT-TNNI3KV9GXZ4 949 aa12.41□□□□□ -0.42
VPS28-204ENST00000526054 RFX7Q2KHR2 1363 aa12.41□□□□□ -0.42
VPS28-204ENST00000526054 GAKO14976 1311 aa12.4□□□□□ -0.42
VPS28-204ENST00000526054 EN2P19622 333 aaPredicted RBP12.4□□□□□ -0.42
VPS28-204ENST00000526054 RGS3P49796 1198 aa12.4□□□□□ -0.42
VPS28-204ENST00000526054 GORABQ5T7V8 394 aa12.4□□□□□ -0.42
VPS28-204ENST00000526054 ANKRD23Q86SG2 305 aa12.4□□□□□ -0.42
VPS28-204ENST00000526054 RHPN1Q8TCX5 695 aa12.4□□□□□ -0.42
VPS28-204ENST00000526054 XAGE2Q96GT9 111 aa12.4□□□□□ -0.42
VPS28-204ENST00000526054 ABCF2Q9UG63 623 aa12.4□□□□□ -0.42
VPS28-204ENST00000526054 ZNF112Q9UJU3 913 aa12.4□□□□□ -0.42
VPS28-204ENST00000526054 KCNH4Q9UQ05 1017 aa12.4□□□□□ -0.42
VPS28-204ENST00000526054 PTPRFP10586 1907 aa12.4□□□□□ -0.42
VPS28-204ENST00000526054 ATRNL1Q5VV63 1379 aa12.4□□□□□ -0.42
VPS28-204ENST00000526054 PDS5AQ29RF7 1337 aaKnown RBP12.39□□□□□ -0.43
VPS28-204ENST00000526054 MAST2Q6P0Q8 1798 aa12.39□□□□□ -0.43
VPS28-204ENST00000526054 APBB1O00213 710 aa12.39□□□□□ -0.43
VPS28-204ENST00000526054 PDHXO00330 501 aa12.39□□□□□ -0.43
VPS28-204ENST00000526054 ZBTB22O15209 634 aa12.39□□□□□ -0.43
VPS28-204ENST00000526054 ENTPD3O75355 529 aa12.39□□□□□ -0.43
VPS28-204ENST00000526054 ECM2O94769 699 aaPredicted RBP12.39□□□□□ -0.43
VPS28-204ENST00000526054 GNRH1P01148 92 aa12.39□□□□□ -0.43
VPS28-204ENST00000526054 TIMM10P62072 90 aa12.39□□□□□ -0.43
VPS28-204ENST00000526054 IRX6P78412 446 aaPredicted RBP12.39□□□□□ -0.43
VPS28-204ENST00000526054 SLC4A8Q2Y0W8 1093 aa12.39□□□□□ -0.43
VPS28-204ENST00000526054 ZSCAN29Q8IWY8 852 aaPredicted RBP12.39□□□□□ -0.43
VPS28-204ENST00000526054 SLF2Q8IX21 1173 aa12.39□□□□□ -0.43
VPS28-204ENST00000526054 GCC1Q96CN9 775 aa12.39□□□□□ -0.43
VPS28-204ENST00000526054 CPA4Q9UI42 421 aa12.39□□□□□ -0.43
VPS28-204ENST00000526054 MGAMO43451 1857 aa12.39□□□□□ -0.43
VPS28-204ENST00000526054 ADGRA2Q96PE1 1338 aa12.38□□□□□ -0.43
VPS28-204ENST00000526054 MYCP01106 439 aaPredicted RBP12.38□□□□□ -0.43
VPS28-204ENST00000526054 PRMT2P55345 433 aa12.38□□□□□ -0.43
VPS28-204ENST00000526054 SPTY2D1Q68D10 685 aaPredicted RBP12.38□□□□□ -0.43
VPS28-204ENST00000526054 AACSQ86V21 672 aa12.38□□□□□ -0.43
VPS28-204ENST00000526054 ZFPM1Q8IX07 1006 aa12.38□□□□□ -0.43
VPS28-204ENST00000526054 CLASRPQ8N2M8 674 aaKnown RBP12.38□□□□□ -0.43
VPS28-204ENST00000526054 SH3TC2Q8TF17 1288 aa12.38□□□□□ -0.43
VPS28-204ENST00000526054 PARK7Q99497 189 aaKnown RBP12.38□□□□□ -0.43
VPS28-204ENST00000526054 IDI2Q9BXS1 227 aa12.38□□□□□ -0.43
VPS28-204ENST00000526054 DCTPP1Q9H773 170 aa12.38□□□□□ -0.43
VPS28-204ENST00000526054 IL1RAPL2Q9NP60 686 aa12.38□□□□□ -0.43
VPS28-204ENST00000526054 PICK1Q9NRD5 415 aa12.38□□□□□ -0.43
VPS28-204ENST00000526054 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.38□□□□□ -0.43
VPS28-204ENST00000526054 PHIPQ8WWQ0 1821 aa12.38□□□□□ -0.43
VPS28-204ENST00000526054 MROH7-TTC4A0A0A0MT08 1334 aa12.37□□□□□ -0.43
VPS28-204ENST00000526054 ATAD5Q96QE3 1844 aa12.37□□□□□ -0.43
VPS28-204ENST00000526054 UQCRFS1P1P0C7P4 283 aa12.37□□□□□ -0.43
VPS28-204ENST00000526054 BTDP43251 543 aa12.37□□□□□ -0.43
VPS28-204ENST00000526054 PICALMQ13492 652 aa12.37□□□□□ -0.43
VPS28-204ENST00000526054 HDAC1Q13547 482 aaPredicted RBP12.37□□□□□ -0.43
VPS28-204ENST00000526054 MOGSQ13724 837 aa12.37□□□□□ -0.43
VPS28-204ENST00000526054 CCDC158Q5M9N0 1113 aa12.37□□□□□ -0.43
VPS28-204ENST00000526054 C17orf99Q6UX52 265 aa12.37□□□□□ -0.43
VPS28-204ENST00000526054 SCYL3Q8IZE3 742 aa12.37□□□□□ -0.43
VPS28-204ENST00000526054 DBNDD2Q9BQY9 259 aa12.37□□□□□ -0.43
VPS28-204ENST00000526054 LRRCC1Q9C099 1032 aa12.37□□□□□ -0.43
VPS28-204ENST00000526054 PCDH10Q9P2E7 1040 aa12.37□□□□□ -0.43
VPS28-204ENST00000526054 IFIT2P09913 472 aaKnown RBP12.36□□□□□ -0.43
VPS28-204ENST00000526054 PSMC4P43686 418 aa12.36□□□□□ -0.43
VPS28-204ENST00000526054 TTC39AQ5SRH9 613 aa12.36□□□□□ -0.43
VPS28-204ENST00000526054 ERICH6Q7L0X2 663 aa12.36□□□□□ -0.43
VPS28-204ENST00000526054 EAF2Q96CJ1 260 aaPredicted RBP12.36□□□□□ -0.43
VPS28-204ENST00000526054 TRIM47Q96LD4 638 aa12.36□□□□□ -0.43
VPS28-204ENST00000526054 CCDC8Q9H0W5 538 aaPredicted RBP12.36□□□□□ -0.43
VPS28-204ENST00000526054 RWDD1Q9H446 243 aaPredicted RBP12.36□□□□□ -0.43
VPS28-204ENST00000526054 DDX4Q9NQI0 724 aaKnown RBP12.36□□□□□ -0.43
VPS28-204ENST00000526054 DBNLQ9UJU6 430 aaKnown RBP12.36□□□□□ -0.43
VPS28-204ENST00000526054 MYPNQ86TC9 1320 aa12.36□□□□□ -0.43
VPS28-204ENST00000526054 A0A0G2JLL6 359 aaPredicted RBP12.35□□□□□ -0.43
VPS28-204ENST00000526054 DDTLA6NHG4 134 aaPredicted RBP12.35□□□□□ -0.43
VPS28-204ENST00000526054 PHF20L1A8MW92 1017 aa12.35□□□□□ -0.43
VPS28-204ENST00000526054 CXCL11O14625 94 aa12.35□□□□□ -0.43
VPS28-204ENST00000526054 FMNL1O95466 1100 aaPredicted RBP12.35□□□□□ -0.43
VPS28-204ENST00000526054 NEFLP07196 543 aa12.35□□□□□ -0.43
VPS28-204ENST00000526054 CYP2C8P10632 490 aa12.35□□□□□ -0.43
VPS28-204ENST00000526054 PTPRAP18433 802 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms