RNA–Protein interactions for RNA: ENST00000524006.5

SPIDR-222, Transcript of scaffold protein involved in DNA repair, human

TSL 5

Gene SPIDR, Length 970 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-222	ENST00000524006	GPBP1L1	Q9HC44	474 aa	Predicted RBP	12.57	□□□□□ -0.4
SPIDR-222	ENST00000524006	ORC3	Q9UBD5	711 aa	Predicted RBP	12.57	□□□□□ -0.4
SPIDR-222	ENST00000524006	COL1A1	P02452	1464 aa	Predicted RBP	12.57	□□□□□ -0.4
SPIDR-222	ENST00000524006	NEDD4	P46934	1319 aa		12.57	□□□□□ -0.4
SPIDR-222	ENST00000524006	FOCAD	Q5VW36	1801 aa		12.56	□□□□□ -0.4
SPIDR-222	ENST00000524006	SH2B2	O14492	632 aa	Predicted RBP	12.56	□□□□□ -0.4
SPIDR-222	ENST00000524006	FOXP2	O15409	715 aa		12.56	□□□□□ -0.4
SPIDR-222	ENST00000524006	DTNB	O60941	627 aa		12.56	□□□□□ -0.4
SPIDR-222	ENST00000524006	CTDSPL2	Q05D32	466 aa		12.56	□□□□□ -0.4
SPIDR-222	ENST00000524006	GRAP	Q13588	217 aa		12.56	□□□□□ -0.4
SPIDR-222	ENST00000524006	CCDC73	Q6ZRK6	1079 aa		12.56	□□□□□ -0.4
SPIDR-222	ENST00000524006	MICU3	Q86XE3	530 aa		12.56	□□□□□ -0.4
SPIDR-222	ENST00000524006	AMOTL1	Q8IY63	956 aa		12.56	□□□□□ -0.4
SPIDR-222	ENST00000524006	FAM43A	Q8N2R8	423 aa		12.56	□□□□□ -0.4
SPIDR-222	ENST00000524006	GRAPL	Q8TC17	118 aa	Predicted RBP	12.56	□□□□□ -0.4
SPIDR-222	ENST00000524006	WASF1	Q92558	559 aa		12.56	□□□□□ -0.4
SPIDR-222	ENST00000524006	CRNKL1	Q9BZJ0	848 aa	Known RBP	12.56	□□□□□ -0.4
SPIDR-222	ENST00000524006	DDX19A	Q9NUU7	478 aa	Known RBP	12.56	□□□□□ -0.4
SPIDR-222	ENST00000524006	NSFL1C	Q9UNZ2	370 aa	Known RBP	12.56	□□□□□ -0.4
SPIDR-222	ENST00000524006	SLC12A7	Q9Y666	1083 aa		12.56	□□□□□ -0.4
SPIDR-222	ENST00000524006	ANKRD31	Q8N7Z5	1873 aa		12.56	□□□□□ -0.4
SPIDR-222	ENST00000524006	MINDY4B	A8MYZ0	360 aa		12.55	□□□□□ -0.4
SPIDR-222	ENST00000524006	KDM4A	O75164	1064 aa		12.55	□□□□□ -0.4
SPIDR-222	ENST00000524006	MMP10	P09238	476 aa		12.55	□□□□□ -0.4
SPIDR-222	ENST00000524006	EVC	P57679	992 aa		12.55	□□□□□ -0.4
SPIDR-222	ENST00000524006	ANTXR2	P58335	489 aa		12.55	□□□□□ -0.4
SPIDR-222	ENST00000524006	GSTO1	P78417	241 aa		12.55	□□□□□ -0.4
SPIDR-222	ENST00000524006	PPARA	Q07869	468 aa		12.55	□□□□□ -0.4
SPIDR-222	ENST00000524006	NFIX	Q14938	502 aa		12.55	□□□□□ -0.4
SPIDR-222	ENST00000524006	WTAP	Q15007	396 aa		12.55	□□□□□ -0.4
SPIDR-222	ENST00000524006	TRIM22	Q8IYM9	498 aa		12.55	□□□□□ -0.4
SPIDR-222	ENST00000524006	LEO1	Q8WVC0	666 aa	Predicted RBP	12.55	□□□□□ -0.4
SPIDR-222	ENST00000524006	STAG1	Q8WVM7	1258 aa		12.55	□□□□□ -0.4
SPIDR-222	ENST00000524006	ESR2	Q92731	530 aa		12.55	□□□□□ -0.4
SPIDR-222	ENST00000524006	RBM17	Q96I25	401 aa	Known RBP	12.55	□□□□□ -0.4
SPIDR-222	ENST00000524006	XDH	P47989	1333 aa		12.55	□□□□□ -0.4
SPIDR-222	ENST00000524006	SALL1	Q9NSC2	1324 aa		12.55	□□□□□ -0.4
SPIDR-222	ENST00000524006	CCDC196	A0A1B0GTZ2	297 aa		12.54	□□□□□ -0.4
SPIDR-222	ENST00000524006	GSG1L2	A8MUP6	293 aa		12.54	□□□□□ -0.4
SPIDR-222	ENST00000524006	PTMA	P06454	111 aa	Known RBP	12.54	□□□□□ -0.4
SPIDR-222	ENST00000524006	CCDC192	P0DO97	292 aa		12.54	□□□□□ -0.4
SPIDR-222	ENST00000524006	GUCY1B3	Q02153	619 aa		12.54	□□□□□ -0.4
SPIDR-222	ENST00000524006	SF3A1	Q15459	793 aa	Known RBP	12.54	□□□□□ -0.4
SPIDR-222	ENST00000524006	MAP3K11	Q16584	847 aa		12.54	□□□□□ -0.4
SPIDR-222	ENST00000524006	BRAP	Q7Z569	592 aa		12.54	□□□□□ -0.4
SPIDR-222	ENST00000524006	TTC6	Q86TZ1	520 aa		12.54	□□□□□ -0.4
SPIDR-222	ENST00000524006	RAB11FIP4	Q86YS3	637 aa		12.54	□□□□□ -0.4
SPIDR-222	ENST00000524006	CCDC24	Q8N4L8	307 aa		12.54	□□□□□ -0.4
SPIDR-222	ENST00000524006	RBSN	Q9H1K0	784 aa		12.54	□□□□□ -0.4
SPIDR-222	ENST00000524006	TNMD	Q9H2S6	317 aa		12.54	□□□□□ -0.4
SPIDR-222	ENST00000524006	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	12.54	□□□□□ -0.4
SPIDR-222	ENST00000524006	TFIP11	Q9UBB9	837 aa	Known RBP	12.54	□□□□□ -0.4
SPIDR-222	ENST00000524006	LEMD3	Q9Y2U8	911 aa		12.54	□□□□□ -0.4
SPIDR-222	ENST00000524006	IGSF3	O75054	1194 aa		12.53	□□□□□ -0.4
SPIDR-222	ENST00000524006	CTDNEP1	O95476	244 aa		12.53	□□□□□ -0.4
SPIDR-222	ENST00000524006	PC	P11498	1178 aa	Known RBP	12.53	□□□□□ -0.4
SPIDR-222	ENST00000524006	SSRP1	Q08945	709 aa	Known RBP	12.53	□□□□□ -0.4
SPIDR-222	ENST00000524006	STK38	Q15208	465 aa		12.53	□□□□□ -0.4
SPIDR-222	ENST00000524006	SAFB	Q15424	915 aa	Known RBP eCLIP	12.53	□□□□□ -0.4
SPIDR-222	ENST00000524006	APOA5	Q6Q788	366 aa		12.53	□□□□□ -0.4
SPIDR-222	ENST00000524006	CYB5R4	Q7L1T6	521 aa		12.53	□□□□□ -0.4
SPIDR-222	ENST00000524006	TMTC2	Q8N394	836 aa		12.53	□□□□□ -0.4
SPIDR-222	ENST00000524006	RNF214	Q8ND24	703 aa		12.53	□□□□□ -0.4
SPIDR-222	ENST00000524006	WDR66	Q8TBY9	1149 aa		12.53	□□□□□ -0.4
SPIDR-222	ENST00000524006	FAM84B	Q96KN1	310 aa	Predicted RBP	12.53	□□□□□ -0.4
SPIDR-222	ENST00000524006	MTA3	Q9BTC8	594 aa		12.53	□□□□□ -0.4
SPIDR-222	ENST00000524006	BRIP1	Q9BX63	1249 aa		12.53	□□□□□ -0.4
SPIDR-222	ENST00000524006	NBPF3	Q9H094	633 aa		12.53	□□□□□ -0.4
SPIDR-222	ENST00000524006	TMX4	Q9H1E5	349 aa	Predicted RBP	12.53	□□□□□ -0.4
SPIDR-222	ENST00000524006	RTN4	Q9NQC3	1192 aa	Known RBP	12.53	□□□□□ -0.4
SPIDR-222	ENST00000524006	GPHN	Q9NQX3	736 aa	Predicted RBP	12.53	□□□□□ -0.4
SPIDR-222	ENST00000524006	PCNT	O95613	3336 aa		12.53	□□□□□ -0.4
SPIDR-222	ENST00000524006	KIF3C	O14782	793 aa		12.52	□□□□□ -0.41
SPIDR-222	ENST00000524006	PRKAB2	O43741	272 aa		12.52	□□□□□ -0.41
SPIDR-222	ENST00000524006	LDHB	P07195	334 aa	Known RBP	12.52	□□□□□ -0.41
SPIDR-222	ENST00000524006	HSPA6	P17066	643 aa		12.52	□□□□□ -0.41
SPIDR-222	ENST00000524006	IARS	P41252	1262 aa	Known RBP	12.52	□□□□□ -0.41
SPIDR-222	ENST00000524006	LIFR	P42702	1097 aa		12.52	□□□□□ -0.41
SPIDR-222	ENST00000524006	ME1	P48163	572 aa		12.52	□□□□□ -0.41
SPIDR-222	ENST00000524006	AKAP17A	Q02040	695 aa	Known RBP	12.52	□□□□□ -0.41
SPIDR-222	ENST00000524006	CEBPZ	Q03701	1054 aa	Known RBP	12.52	□□□□□ -0.41
SPIDR-222	ENST00000524006	ZRSR1	Q15695	479 aa	Known RBP	12.52	□□□□□ -0.41
SPIDR-222	ENST00000524006	RTN1	Q16799	776 aa		12.52	□□□□□ -0.41
SPIDR-222	ENST00000524006	FAM173B	Q6P4H8	233 aa		12.52	□□□□□ -0.41
SPIDR-222	ENST00000524006	FBXO33	Q7Z6M2	555 aa		12.52	□□□□□ -0.41
SPIDR-222	ENST00000524006	IQCA1	Q86XH1	822 aa		12.52	□□□□□ -0.41
SPIDR-222	ENST00000524006	ALG1	Q9BT22	464 aa		12.52	□□□□□ -0.41
SPIDR-222	ENST00000524006	TAOK2	Q9UL54	1235 aa		12.52	□□□□□ -0.41
SPIDR-222	ENST00000524006	STK36	Q9NRP7	1315 aa		12.52	□□□□□ -0.41
SPIDR-222	ENST00000524006	KIN	O60870	393 aa	Known RBP	12.51	□□□□□ -0.41
SPIDR-222	ENST00000524006	UFL1	O94874	794 aa		12.51	□□□□□ -0.41
SPIDR-222	ENST00000524006	SERPINB2	P05120	415 aa		12.51	□□□□□ -0.41
SPIDR-222	ENST00000524006	LDHC	P07864	332 aa		12.51	□□□□□ -0.41
SPIDR-222	ENST00000524006	UVSSA	Q2YD98	709 aa		12.51	□□□□□ -0.41
SPIDR-222	ENST00000524006	PRR5L	Q6MZQ0	368 aa		12.51	□□□□□ -0.41
SPIDR-222	ENST00000524006	GIMAP6	Q6P9H5	292 aa		12.51	□□□□□ -0.41
SPIDR-222	ENST00000524006	SASS6	Q6UVJ0	657 aa		12.51	□□□□□ -0.41
SPIDR-222	ENST00000524006	SGMS1	Q86VZ5	419 aa		12.51	□□□□□ -0.41
SPIDR-222	ENST00000524006	CERS3	Q8IU89	383 aa		12.51	□□□□□ -0.41
SPIDR-222	ENST00000524006	CCDC144CP	Q8IYA2	1237 aa		12.51	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms