RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 LARP1BQ659C4 914 aaKnown RBP10.79□□□□□ -0.68
LSM1-202ENST00000520286 WFDC8Q8IUA0 241 aa10.79□□□□□ -0.68
LSM1-202ENST00000520286 RNPC3Q96LT9 517 aaKnown RBP10.79□□□□□ -0.68
LSM1-202ENST00000520286 CARD10Q9BWT7 1032 aa10.79□□□□□ -0.68
LSM1-202ENST00000520286 INPP5AQ14642 412 aa10.78□□□□□ -0.68
LSM1-202ENST00000520286 PLPPR2Q96GM1 343 aa10.78□□□□□ -0.68
LSM1-202ENST00000520286 MAPK8IP1Q9UQF2 711 aa10.78□□□□□ -0.68
LSM1-202ENST00000520286 SNCAIPQ9Y6H5 919 aa10.78□□□□□ -0.68
LSM1-202ENST00000520286 PRR36Q9H6K5 1346 aa10.78□□□□□ -0.68
LSM1-202ENST00000520286 M0R082 166 aa10.77□□□□□ -0.69
LSM1-202ENST00000520286 VSIG8P0DPA2 414 aa10.77□□□□□ -0.69
LSM1-202ENST00000520286 CDK11BP21127 795 aaKnown RBP10.77□□□□□ -0.69
LSM1-202ENST00000520286 HNRNPUQ00839 825 aaKnown RBP eCLIP10.77□□□□□ -0.69
LSM1-202ENST00000520286 SRSF11Q05519 484 aaKnown RBP10.77□□□□□ -0.69
LSM1-202ENST00000520286 PDE3AQ14432 1141 aa10.77□□□□□ -0.69
LSM1-202ENST00000520286 LRRFIP1Q32MZ4 808 aaKnown RBP10.77□□□□□ -0.69
LSM1-202ENST00000520286 LRFN4Q6PJG9 635 aa10.77□□□□□ -0.69
LSM1-202ENST00000520286 RUFY4Q6ZNE9 571 aa10.77□□□□□ -0.69
LSM1-202ENST00000520286 C8orf86Q6ZUL3 223 aa10.77□□□□□ -0.69
LSM1-202ENST00000520286 HDXQ7Z353 690 aa10.77□□□□□ -0.69
LSM1-202ENST00000520286 ZNF417Q8TAU3 575 aa10.77□□□□□ -0.69
LSM1-202ENST00000520286 ZNF587Q96SQ5 575 aaPredicted RBP10.77□□□□□ -0.69
LSM1-202ENST00000520286 ANTXR1Q9H6X2 564 aa10.77□□□□□ -0.69
LSM1-202ENST00000520286 ENPP3O14638 875 aa10.76□□□□□ -0.69
LSM1-202ENST00000520286 PDPK1O15530 556 aa10.76□□□□□ -0.69
LSM1-202ENST00000520286 ZNF862O60290 1169 aa10.76□□□□□ -0.69
LSM1-202ENST00000520286 HTR3BO95264 441 aa10.76□□□□□ -0.69
LSM1-202ENST00000520286 CTSBP07858 339 aa10.76□□□□□ -0.69
LSM1-202ENST00000520286 IFRD2Q12894 506 aaPredicted RBP10.76□□□□□ -0.69
LSM1-202ENST00000520286 MSL1Q68DK7 614 aa10.76□□□□□ -0.69
LSM1-202ENST00000520286 C1orf229Q6ZS94 237 aaPredicted RBP10.76□□□□□ -0.69
LSM1-202ENST00000520286 C19orf47Q8N9M1 422 aaKnown RBP10.76□□□□□ -0.69
LSM1-202ENST00000520286 KLHDC7BQ96G42 594 aa10.76□□□□□ -0.69
LSM1-202ENST00000520286 DNAJC7Q99615 494 aa10.76□□□□□ -0.69
LSM1-202ENST00000520286 CORINQ9Y5Q5 1042 aa10.76□□□□□ -0.69
LSM1-202ENST00000520286 MEIS3P2A8K0S8 358 aa10.75□□□□□ -0.69
LSM1-202ENST00000520286 CHMP4BP1P59074 171 aa10.75□□□□□ -0.69
LSM1-202ENST00000520286 ANKRD13AQ8IZ07 590 aa10.75□□□□□ -0.69
LSM1-202ENST00000520286 KLHL23Q8NBE8 558 aa10.75□□□□□ -0.69
LSM1-202ENST00000520286 MICAL1Q8TDZ2 1067 aa10.75□□□□□ -0.69
LSM1-202ENST00000520286 ACDQ96AP0 544 aa10.75□□□□□ -0.69
LSM1-202ENST00000520286 ELMO3Q96BJ8 720 aa10.75□□□□□ -0.69
LSM1-202ENST00000520286 TM9SF2Q99805 663 aa10.75□□□□□ -0.69
LSM1-202ENST00000520286 USP26Q9BXU7 913 aa10.75□□□□□ -0.69
LSM1-202ENST00000520286 LIG1P18858 919 aa10.74□□□□□ -0.69
LSM1-202ENST00000520286 RASGRF1Q13972 1273 aa10.74□□□□□ -0.69
LSM1-202ENST00000520286 MLECQ14165 292 aa10.74□□□□□ -0.69
LSM1-202ENST00000520286 SUZ12Q15022 739 aaKnown RBP10.74□□□□□ -0.69
LSM1-202ENST00000520286 CHSY3Q70JA7 882 aa10.74□□□□□ -0.69
LSM1-202ENST00000520286 TMEM40Q8WWA1 233 aa10.74□□□□□ -0.69
LSM1-202ENST00000520286 EDARADDQ8WWZ3 215 aa10.74□□□□□ -0.69
LSM1-202ENST00000520286 WDR89Q96FK6 387 aaPredicted RBP10.74□□□□□ -0.69
LSM1-202ENST00000520286 A0A1W2PQH9 124 aa10.73□□□□□ -0.69
LSM1-202ENST00000520286 GJB6O95452 261 aa10.73□□□□□ -0.69
LSM1-202ENST00000520286 GUCY2CP25092 1073 aa10.73□□□□□ -0.69
LSM1-202ENST00000520286 NLRP12P59046 1061 aa10.73□□□□□ -0.69
LSM1-202ENST00000520286 KIF4BQ2VIQ3 1234 aa10.73□□□□□ -0.69
LSM1-202ENST00000520286 TTC6Q86TZ1 520 aa10.73□□□□□ -0.69
LSM1-202ENST00000520286 ZSCAN1Q8NBB4 408 aa10.73□□□□□ -0.69
LSM1-202ENST00000520286 GALNT6Q8NCL4 622 aa10.73□□□□□ -0.69
LSM1-202ENST00000520286 REV1Q9UBZ9 1251 aa10.73□□□□□ -0.69
LSM1-202ENST00000520286 TACC3Q9Y6A5 838 aa10.73□□□□□ -0.69
LSM1-202ENST00000520286 DCDC2CA8MYV0 355 aa10.72□□□□□ -0.69
LSM1-202ENST00000520286 DDAH1O94760 285 aa10.72□□□□□ -0.69
LSM1-202ENST00000520286 PLCG1P19174 1290 aa10.72□□□□□ -0.69
LSM1-202ENST00000520286 PDE4BQ07343 736 aa10.72□□□□□ -0.69
LSM1-202ENST00000520286 SETDB1Q15047 1291 aa10.72□□□□□ -0.69
LSM1-202ENST00000520286 CYFIP1Q7L576 1253 aa10.72□□□□□ -0.69
LSM1-202ENST00000520286 LILRB2Q8N423 598 aa10.72□□□□□ -0.69
LSM1-202ENST00000520286 SH3TC2Q8TF17 1288 aa10.72□□□□□ -0.69
LSM1-202ENST00000520286 TM4SF5O14894 197 aa10.71□□□□□ -0.69
LSM1-202ENST00000520286 ADAMTS2O95450 1211 aa10.71□□□□□ -0.69
LSM1-202ENST00000520286 HP1BP3Q5SSJ5 553 aaPredicted RBP10.71□□□□□ -0.69
LSM1-202ENST00000520286 GALNT11Q8NCW6 608 aa10.71□□□□□ -0.69
LSM1-202ENST00000520286 PRDM6Q9NQX0 595 aa10.71□□□□□ -0.69
LSM1-202ENST00000520286 GMIPQ9P107 970 aa10.71□□□□□ -0.69
LSM1-202ENST00000520286 LOC100289279A0A1B0GTE1 492 aa10.7□□□□□ -0.7
LSM1-202ENST00000520286 PRAMEF27A3QJZ7 478 aa10.7□□□□□ -0.7
LSM1-202ENST00000520286 OVOS1Q6IE37 1185 aa10.7□□□□□ -0.7
LSM1-202ENST00000520286 MAP4K3Q8IVH8 894 aa10.7□□□□□ -0.7
LSM1-202ENST00000520286 TAB3Q8N5C8 712 aaPredicted RBP10.7□□□□□ -0.7
LSM1-202ENST00000520286 BTBD6Q96KE9 485 aa10.7□□□□□ -0.7
LSM1-202ENST00000520286 KANSL2Q9H9L4 492 aa10.7□□□□□ -0.7
LSM1-202ENST00000520286 ABCC9O60706 1549 aa10.69□□□□□ -0.7
LSM1-202ENST00000520286 ERBB4Q15303 1308 aa10.69□□□□□ -0.7
LSM1-202ENST00000520286 SLC22A31A6NKX4 558 aa10.69□□□□□ -0.7
LSM1-202ENST00000520286 B2RBV5 119 aa10.69□□□□□ -0.7
LSM1-202ENST00000520286 KRT76Q01546 638 aa10.69□□□□□ -0.7
LSM1-202ENST00000520286 MTERF2Q49AM1 385 aa10.69□□□□□ -0.7
LSM1-202ENST00000520286 C6orf15Q6UXA7 325 aaPredicted RBP10.69□□□□□ -0.7
LSM1-202ENST00000520286 C12orf40Q86WS4 652 aa10.69□□□□□ -0.7
LSM1-202ENST00000520286 FAM178BQ8IXR5 827 aa10.69□□□□□ -0.7
LSM1-202ENST00000520286 DMRTC2Q8IXT2 367 aaPredicted RBP10.69□□□□□ -0.7
LSM1-202ENST00000520286 CSADQ9Y600 493 aa10.69□□□□□ -0.7
LSM1-202ENST00000520286 SLC12A7Q9Y666 1083 aa10.69□□□□□ -0.7
LSM1-202ENST00000520286 DDX3YO15523 660 aaKnown RBP10.68□□□□□ -0.7
LSM1-202ENST00000520286 ADAM11O75078 769 aa10.68□□□□□ -0.7
LSM1-202ENST00000520286 AOC2O75106 756 aa10.68□□□□□ -0.7
LSM1-202ENST00000520286 CDC45O75419 566 aa10.68□□□□□ -0.7
LSM1-202ENST00000520286 SLFN14P0C7P3 912 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms