RNA–Protein interactions for RNA: ENST00000514660.1

NEDD9-215, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 473 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-215ENST00000514660 FAM151AQ8WW52 585 aa13.44□□□□□ -0.26
NEDD9-215ENST00000514660 MYLIPQ8WY64 445 aa13.44□□□□□ -0.26
NEDD9-215ENST00000514660 TRIB2Q92519 343 aa13.44□□□□□ -0.26
NEDD9-215ENST00000514660 FAM198AQ9UFP1 575 aa13.44□□□□□ -0.26
NEDD9-215ENST00000514660 AFG3L2Q9Y4W6 797 aa13.44□□□□□ -0.26
NEDD9-215ENST00000514660 ZHX2Q9Y6X8 837 aa13.44□□□□□ -0.26
NEDD9-215ENST00000514660 MAST2Q6P0Q8 1798 aa13.43□□□□□ -0.26
NEDD9-215ENST00000514660 PEX10O60683 326 aa13.43□□□□□ -0.26
NEDD9-215ENST00000514660 HMGCRP04035 888 aa13.43□□□□□ -0.26
NEDD9-215ENST00000514660 TREML2Q5T2D2 321 aa13.43□□□□□ -0.26
NEDD9-215ENST00000514660 MAP3K21Q5TCX8 1036 aa13.43□□□□□ -0.26
NEDD9-215ENST00000514660 GADL1Q6ZQY3 521 aa13.43□□□□□ -0.26
NEDD9-215ENST00000514660 USP38Q8NB14 1042 aa13.43□□□□□ -0.26
NEDD9-215ENST00000514660 LINS1Q8NG48 757 aa13.43□□□□□ -0.26
NEDD9-215ENST00000514660 TSR2Q969E8 191 aaKnown RBP13.43□□□□□ -0.26
NEDD9-215ENST00000514660 MRIQ9BWK5 157 aa13.43□□□□□ -0.26
NEDD9-215ENST00000514660 SEMA6BQ9H3T3 888 aa13.43□□□□□ -0.26
NEDD9-215ENST00000514660 CDH23Q9H251 3354 aa13.42□□□□□ -0.26
NEDD9-215ENST00000514660 FRMPD3Q5JV73 1810 aa13.42□□□□□ -0.26
NEDD9-215ENST00000514660 DOCK2Q92608 1830 aa13.42□□□□□ -0.26
NEDD9-215ENST00000514660 APAF1O14727 1248 aa13.42□□□□□ -0.26
NEDD9-215ENST00000514660 SLC4A2P04920 1241 aa13.42□□□□□ -0.26
NEDD9-215ENST00000514660 PTPRAP18433 802 aa13.42□□□□□ -0.26
NEDD9-215ENST00000514660 CDC42EP5Q6NZY7 148 aa13.42□□□□□ -0.26
NEDD9-215ENST00000514660 DNAAF4Q8WXU2 420 aa13.42□□□□□ -0.26
NEDD9-215ENST00000514660 HMX1Q9NP08 348 aaPredicted RBP13.42□□□□□ -0.26
NEDD9-215ENST00000514660 CNNM1Q9NRU3 951 aa13.42□□□□□ -0.26
NEDD9-215ENST00000514660 FLIIQ13045 1269 aa13.41□□□□□ -0.26
NEDD9-215ENST00000514660 ZNF697Q5TEC3 545 aa13.41□□□□□ -0.26
NEDD9-215ENST00000514660 SH3BP5LQ7L8J4 393 aa13.41□□□□□ -0.26
NEDD9-215ENST00000514660 KAZALD1Q96I82 304 aa13.41□□□□□ -0.26
NEDD9-215ENST00000514660 TMOD2Q9NZR1 351 aa13.41□□□□□ -0.26
NEDD9-215ENST00000514660 SLC45A1Q9Y2W3 748 aa13.41□□□□□ -0.26
NEDD9-215ENST00000514660 DAGLAQ9Y4D2 1042 aa13.41□□□□□ -0.26
NEDD9-215ENST00000514660 DOCK1Q14185 1865 aa13.41□□□□□ -0.26
NEDD9-215ENST00000514660 F6X3S4 739 aa13.4□□□□□ -0.26
NEDD9-215ENST00000514660 PLA2G5P39877 138 aa13.4□□□□□ -0.26
NEDD9-215ENST00000514660 DIXDC1Q155Q3 683 aa13.4□□□□□ -0.26
NEDD9-215ENST00000514660 C9orf50Q5SZB4 431 aa13.4□□□□□ -0.26
NEDD9-215ENST00000514660 LHX8Q68G74 356 aa13.4□□□□□ -0.26
NEDD9-215ENST00000514660 HHIPL2Q6UWX4 724 aa13.4□□□□□ -0.26
NEDD9-215ENST00000514660 FASTKD5Q7L8L6 764 aaKnown RBP13.4□□□□□ -0.26
NEDD9-215ENST00000514660 SCYL3Q8IZE3 742 aa13.4□□□□□ -0.26
NEDD9-215ENST00000514660 COA7Q96BR5 231 aa13.4□□□□□ -0.26
NEDD9-215ENST00000514660 HOOK2Q96ED9 719 aa13.4□□□□□ -0.26
NEDD9-215ENST00000514660 DNAH12Q6ZR08 3092 aa13.4□□□□□ -0.26
NEDD9-215ENST00000514660 SHHQ15465 462 aa13.39□□□□□ -0.27
NEDD9-215ENST00000514660 FAM110CQ1W6H9 321 aa13.39□□□□□ -0.27
NEDD9-215ENST00000514660 BEND3Q5T5X7 828 aa13.39□□□□□ -0.27
NEDD9-215ENST00000514660 VGLL2Q8N8G2 317 aa13.39□□□□□ -0.27
NEDD9-215ENST00000514660 SMCR8Q8TEV9 937 aaPredicted RBP13.39□□□□□ -0.27
NEDD9-215ENST00000514660 MYH16Q9H6N6 1097 aa13.39□□□□□ -0.27
NEDD9-215ENST00000514660 LOC285556D6RIA3 1793 aa13.39□□□□□ -0.27
NEDD9-215ENST00000514660 TRIM75PA6NK02 468 aa13.38□□□□□ -0.27
NEDD9-215ENST00000514660 PRKAR2AP13861 404 aaKnown RBP13.38□□□□□ -0.27
NEDD9-215ENST00000514660 CCND3P30281 292 aaPredicted RBP13.38□□□□□ -0.27
NEDD9-215ENST00000514660 CCDC57Q2TAC2 916 aa13.38□□□□□ -0.27
NEDD9-215ENST00000514660 LRRC24Q50LG9 513 aa13.38□□□□□ -0.27
NEDD9-215ENST00000514660 TBC1D22AQ8WUA7 517 aa13.38□□□□□ -0.27
NEDD9-215ENST00000514660 AGTPBP1Q9UPW5 1226 aa13.38□□□□□ -0.27
NEDD9-215ENST00000514660 MYH13Q9UKX3 1938 aa13.37□□□□□ -0.27
NEDD9-215ENST00000514660 TNFRSF10AO00220 468 aa13.37□□□□□ -0.27
NEDD9-215ENST00000514660 CYP2B6P20813 491 aa13.37□□□□□ -0.27
NEDD9-215ENST00000514660 MAP3K10Q02779 954 aa13.37□□□□□ -0.27
NEDD9-215ENST00000514660 FKBP5Q13451 457 aaPredicted RBP13.37□□□□□ -0.27
NEDD9-215ENST00000514660 RALBP1Q15311 655 aa13.37□□□□□ -0.27
NEDD9-215ENST00000514660 STK31Q9BXU1 1019 aa13.37□□□□□ -0.27
NEDD9-215ENST00000514660 RFX7Q2KHR2 1363 aa13.36□□□□□ -0.27
NEDD9-215ENST00000514660 DDTLA6NHG4 134 aaPredicted RBP13.36□□□□□ -0.27
NEDD9-215ENST00000514660 CACNB2Q08289 660 aaPredicted RBP13.36□□□□□ -0.27
NEDD9-215ENST00000514660 CCL14Q16627 93 aa13.36□□□□□ -0.27
NEDD9-215ENST00000514660 TWISTNBQ3B726 338 aaPredicted RBP13.36□□□□□ -0.27
NEDD9-215ENST00000514660 TAF7LQ5H9L4 462 aa13.36□□□□□ -0.27
NEDD9-215ENST00000514660 SUCLG2Q96I99 432 aa13.36□□□□□ -0.27
NEDD9-215ENST00000514660 PRDX5P30044 214 aa13.35□□□□□ -0.27
NEDD9-215ENST00000514660 RRP1BQ14684 758 aaKnown RBP13.35□□□□□ -0.27
NEDD9-215ENST00000514660 WDR43Q15061 677 aaKnown RBP eCLIP13.35□□□□□ -0.27
NEDD9-215ENST00000514660 POTEEQ6S8J3 1075 aa13.35□□□□□ -0.27
NEDD9-215ENST00000514660 RLFQ13129 1914 aa13.35□□□□□ -0.27
NEDD9-215ENST00000514660 CACNA1FO60840 1977 aa13.34□□□□□ -0.27
NEDD9-215ENST00000514660 FAM196BA6NMK8 535 aa13.34□□□□□ -0.27
NEDD9-215ENST00000514660 GRM8O00222 908 aa13.34□□□□□ -0.27
NEDD9-215ENST00000514660 FOSL2P15408 326 aa13.34□□□□□ -0.27
NEDD9-215ENST00000514660 RGS3P49796 1198 aa13.34□□□□□ -0.27
NEDD9-215ENST00000514660 TJAP1Q5JTD0 557 aa13.34□□□□□ -0.27
NEDD9-215ENST00000514660 USP6NLQ92738 828 aa13.34□□□□□ -0.27
NEDD9-215ENST00000514660 SYMPKQ92797 1274 aaKnown RBP13.34□□□□□ -0.27
NEDD9-215ENST00000514660 TXNRD2Q9NNW7 524 aa13.34□□□□□ -0.27
NEDD9-215ENST00000514660 DDX4Q9NQI0 724 aaKnown RBP13.34□□□□□ -0.27
NEDD9-215ENST00000514660 PICK1Q9NRD5 415 aa13.34□□□□□ -0.27
NEDD9-215ENST00000514660 USP40Q9NVE5 1235 aa13.34□□□□□ -0.27
NEDD9-215ENST00000514660 SUGT1Q9Y2Z0 365 aa13.34□□□□□ -0.27
NEDD9-215ENST00000514660 MYBBP1AQ9BQG0 1328 aaKnown RBP13.34□□□□□ -0.27
NEDD9-215ENST00000514660 MYH2Q9UKX2 1941 aa13.33□□□□□ -0.28
NEDD9-215ENST00000514660 FRAT2O75474 233 aaPredicted RBP13.33□□□□□ -0.28
NEDD9-215ENST00000514660 FGFR2P21802 821 aa13.33□□□□□ -0.28
NEDD9-215ENST00000514660 ATN1P54259 1190 aaPredicted RBP13.33□□□□□ -0.28
NEDD9-215ENST00000514660 VPS37DQ86XT2 251 aa13.33□□□□□ -0.28
NEDD9-215ENST00000514660 KLHDC4Q8TBB5 520 aa13.33□□□□□ -0.28
NEDD9-215ENST00000514660 ASCC2Q9H1I8 757 aaPredicted RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms