RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 LBX1P52954 281 aa11.84□□□□□ -0.51
RNF4-221ENST00000513643 INHBEP58166 350 aa11.84□□□□□ -0.51
RNF4-221ENST00000513643 TTF1Q15361 905 aaPredicted RBP11.84□□□□□ -0.51
RNF4-221ENST00000513643 NOL9Q5SY16 702 aaKnown RBP11.84□□□□□ -0.51
RNF4-221ENST00000513643 DCAF15Q66K64 600 aa11.84□□□□□ -0.51
RNF4-221ENST00000513643 SH3RF3Q8TEJ3 882 aaPredicted RBP11.84□□□□□ -0.51
RNF4-221ENST00000513643 AIDAQ96BJ3 306 aa11.84□□□□□ -0.51
RNF4-221ENST00000513643 ZNF341Q9BYN7 854 aa11.84□□□□□ -0.51
RNF4-221ENST00000513643 SALL3Q9BXA9 1300 aa11.84□□□□□ -0.51
RNF4-221ENST00000513643 SPDYE5A6NIY4 337 aa11.83□□□□□ -0.52
RNF4-221ENST00000513643 BAG3O95817 575 aa11.83□□□□□ -0.52
RNF4-221ENST00000513643 MAP3K12Q12852 859 aa11.83□□□□□ -0.52
RNF4-221ENST00000513643 NOM1Q5C9Z4 860 aaKnown RBP11.83□□□□□ -0.52
RNF4-221ENST00000513643 MIGA2Q7L4E1 593 aa11.83□□□□□ -0.52
RNF4-221ENST00000513643 ZKSCAN4Q969J2 545 aaPredicted RBP11.83□□□□□ -0.52
RNF4-221ENST00000513643 PTPN18Q99952 460 aa11.83□□□□□ -0.52
RNF4-221ENST00000513643 RIOK1Q9BRS2 568 aaKnown RBP11.83□□□□□ -0.52
RNF4-221ENST00000513643 OSBPL5Q9H0X9 879 aaPredicted RBP11.83□□□□□ -0.52
RNF4-221ENST00000513643 LAMB1P07942 1786 aa11.82□□□□□ -0.52
RNF4-221ENST00000513643 MANSC4A6NHS7 340 aaPredicted RBP11.82□□□□□ -0.52
RNF4-221ENST00000513643 IDH1O75874 414 aaKnown RBP11.82□□□□□ -0.52
RNF4-221ENST00000513643 PLCG2P16885 1265 aa11.82□□□□□ -0.52
RNF4-221ENST00000513643 CYP7A1P22680 504 aa11.82□□□□□ -0.52
RNF4-221ENST00000513643 INPP5BP32019 993 aa11.82□□□□□ -0.52
RNF4-221ENST00000513643 ERO1BQ86YB8 467 aa11.82□□□□□ -0.52
RNF4-221ENST00000513643 CERS3Q8IU89 383 aa11.82□□□□□ -0.52
RNF4-221ENST00000513643 MAGEB6Q8N7X4 407 aa11.82□□□□□ -0.52
RNF4-221ENST00000513643 CNKSR2Q8WXI2 1034 aa11.82□□□□□ -0.52
RNF4-221ENST00000513643 OPTNQ96CV9 577 aa11.82□□□□□ -0.52
RNF4-221ENST00000513643 EDC3Q96F86 508 aaKnown RBP11.82□□□□□ -0.52
RNF4-221ENST00000513643 WRNIP1Q96S55 665 aa11.82□□□□□ -0.52
RNF4-221ENST00000513643 BEGAINQ9BUH8 593 aa11.82□□□□□ -0.52
RNF4-221ENST00000513643 BOLA2Q9H3K6 86 aa11.82□□□□□ -0.52
RNF4-221ENST00000513643 ELP3Q9H9T3 547 aa11.82□□□□□ -0.52
RNF4-221ENST00000513643 ECHDC1Q9NTX5 307 aa11.82□□□□□ -0.52
RNF4-221ENST00000513643 AATFQ9NY61 560 aaKnown RBP eCLIP11.82□□□□□ -0.52
RNF4-221ENST00000513643 SUPT16HQ9Y5B9 1047 aaKnown RBP11.82□□□□□ -0.52
RNF4-221ENST00000513643 MYO5AQ9Y4I1 1855 aaKnown RBP11.82□□□□□ -0.52
RNF4-221ENST00000513643 IGF2BP3O00425 579 aaKnown RBP eCLIP11.81□□□□□ -0.52
RNF4-221ENST00000513643 GOLIM4O00461 696 aa11.81□□□□□ -0.52
RNF4-221ENST00000513643 TRPA1O75762 1119 aa11.81□□□□□ -0.52
RNF4-221ENST00000513643 SLURP2P0DP57 97 aa11.81□□□□□ -0.52
RNF4-221ENST00000513643 PDE6AP16499 860 aa11.81□□□□□ -0.52
RNF4-221ENST00000513643 DYNLL1P63167 89 aaKnown RBP11.81□□□□□ -0.52
RNF4-221ENST00000513643 PPATQ06203 517 aa11.81□□□□□ -0.52
RNF4-221ENST00000513643 SREBF2Q12772 1141 aa11.81□□□□□ -0.52
RNF4-221ENST00000513643 IFNL1Q8IU54 200 aa11.81□□□□□ -0.52
RNF4-221ENST00000513643 SMC5Q8IY18 1101 aa11.81□□□□□ -0.52
RNF4-221ENST00000513643 TEX11Q8IYF3 940 aa11.81□□□□□ -0.52
RNF4-221ENST00000513643 EXOC6Q8TAG9 804 aa11.81□□□□□ -0.52
RNF4-221ENST00000513643 GCC1Q96CN9 775 aa11.81□□□□□ -0.52
RNF4-221ENST00000513643 PAG1Q9NWQ8 432 aa11.81□□□□□ -0.52
RNF4-221ENST00000513643 KCNH4Q9UQ05 1017 aa11.81□□□□□ -0.52
RNF4-221ENST00000513643 OTOFQ9HC10 1997 aa11.81□□□□□ -0.52
RNF4-221ENST00000513643 DOCK2Q92608 1830 aa11.81□□□□□ -0.52
RNF4-221ENST00000513643 IRF6O14896 467 aa11.8□□□□□ -0.52
RNF4-221ENST00000513643 ADD2P35612 726 aa11.8□□□□□ -0.52
RNF4-221ENST00000513643 MKRN3Q13064 507 aaKnown RBP11.8□□□□□ -0.52
RNF4-221ENST00000513643 PPIL2Q13356 520 aa11.8□□□□□ -0.52
RNF4-221ENST00000513643 PICALMQ13492 652 aa11.8□□□□□ -0.52
RNF4-221ENST00000513643 MOGSQ13724 837 aa11.8□□□□□ -0.52
RNF4-221ENST00000513643 RRP1BQ14684 758 aaKnown RBP11.8□□□□□ -0.52
RNF4-221ENST00000513643 UBE3CQ15386 1083 aa11.8□□□□□ -0.52
RNF4-221ENST00000513643 SLC9C2Q5TAH2 1124 aa11.8□□□□□ -0.52
RNF4-221ENST00000513643 PI4K2BQ8TCG2 481 aa11.8□□□□□ -0.52
RNF4-221ENST00000513643 BRI3BPQ8WY22 251 aa11.8□□□□□ -0.52
RNF4-221ENST00000513643 DHX36Q9H2U1 1008 aaKnown RBP11.8□□□□□ -0.52
RNF4-221ENST00000513643 R3HDMLQ9H3Y0 253 aa11.8□□□□□ -0.52
RNF4-221ENST00000513643 TSKSQ9UJT2 592 aa11.8□□□□□ -0.52
RNF4-221ENST00000513643 CSADQ9Y600 493 aa11.8□□□□□ -0.52
RNF4-221ENST00000513643 HTTP42858 3142 aa11.8□□□□□ -0.52
RNF4-221ENST00000513643 FLT1P17948 1338 aa11.8□□□□□ -0.52
RNF4-221ENST00000513643 MAST2Q6P0Q8 1798 aa11.79□□□□□ -0.52
RNF4-221ENST00000513643 CTNND1O60716 968 aaKnown RBP11.79□□□□□ -0.52
RNF4-221ENST00000513643 ALDH1A1P00352 501 aa11.79□□□□□ -0.52
RNF4-221ENST00000513643 IGHDP01880 384 aa11.79□□□□□ -0.52
RNF4-221ENST00000513643 FOXP4Q8IVH2 680 aaPredicted RBP11.79□□□□□ -0.52
RNF4-221ENST00000513643 MIGA1Q8NAN2 632 aa11.79□□□□□ -0.52
RNF4-221ENST00000513643 OTUD7AQ8TE49 926 aaPredicted RBP11.79□□□□□ -0.52
RNF4-221ENST00000513643 TGFBRAP1Q8WUH2 860 aa11.79□□□□□ -0.52
RNF4-221ENST00000513643 DNAJC18Q9H819 358 aa11.79□□□□□ -0.52
RNF4-221ENST00000513643 PI4KBQ9UBF8 816 aa11.79□□□□□ -0.52
RNF4-221ENST00000513643 STAP2Q9UGK3 403 aa11.79□□□□□ -0.52
RNF4-221ENST00000513643 HERC5Q9UII4 1024 aaKnown RBP11.79□□□□□ -0.52
RNF4-221ENST00000513643 TTC41PQ6P2S7 1318 aa11.79□□□□□ -0.52
RNF4-221ENST00000513643 ZNF532Q9HCE3 1301 aa11.79□□□□□ -0.52
RNF4-221ENST00000513643 CHGBP05060 677 aa11.78□□□□□ -0.52
RNF4-221ENST00000513643 PTPRAP18433 802 aa11.78□□□□□ -0.52
RNF4-221ENST00000513643 GTF2A2P52657 109 aa11.78□□□□□ -0.52
RNF4-221ENST00000513643 SLFNL1Q499Z3 407 aa11.78□□□□□ -0.52
RNF4-221ENST00000513643 MAPKAPK5Q8IW41 473 aa11.78□□□□□ -0.52
RNF4-221ENST00000513643 SCYL3Q8IZE3 742 aa11.78□□□□□ -0.52
RNF4-221ENST00000513643 DNAJC2Q99543 621 aaKnown RBP11.78□□□□□ -0.52
RNF4-221ENST00000513643 NOL10Q9BSC4 688 aaKnown RBP11.78□□□□□ -0.52
RNF4-221ENST00000513643 ZCCHC17Q9NP64 241 aaKnown RBP11.78□□□□□ -0.52
RNF4-221ENST00000513643 AFG3L2Q9Y4W6 797 aa11.78□□□□□ -0.52
RNF4-221ENST00000513643 CXCL11O14625 94 aa11.77□□□□□ -0.53
RNF4-221ENST00000513643 TBC1D8O95759 1140 aa11.77□□□□□ -0.53
RNF4-221ENST00000513643 ZSCAN29Q8IWY8 852 aaPredicted RBP11.77□□□□□ -0.53
RNF4-221ENST00000513643 KBTBD3Q8NAB2 608 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms