RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 GPBP1L1Q9HC44 474 aaPredicted RBP9.96□□□□□ -0.81
VCAN-208ENST00000512590 MAP3K2Q9Y2U5 619 aa9.96□□□□□ -0.81
VCAN-208ENST00000512590 UBXN2AP68543 259 aa9.96□□□□□ -0.82
VCAN-208ENST00000512590 CAMK4Q16566 473 aa9.96□□□□□ -0.82
VCAN-208ENST00000512590 MPNDQ8N594 471 aa9.96□□□□□ -0.82
VCAN-208ENST00000512590 RAET1EQ8TD07 263 aa9.96□□□□□ -0.82
VCAN-208ENST00000512590 COA7Q96BR5 231 aa9.96□□□□□ -0.82
VCAN-208ENST00000512590 KIF3CO14782 793 aa9.96□□□□□ -0.82
VCAN-208ENST00000512590 NONOQ15233 471 aaKnown RBP eCLIP9.96□□□□□ -0.82
VCAN-208ENST00000512590 QTRT2Q9H974 415 aaKnown RBP9.96□□□□□ -0.82
VCAN-208ENST00000512590 BTG4Q9NY30 223 aa9.96□□□□□ -0.82
VCAN-208ENST00000512590 ZHX1Q9UKY1 873 aaPredicted RBP9.96□□□□□ -0.82
VCAN-208ENST00000512590 CCDC61Q9Y6R9 512 aa9.96□□□□□ -0.82
VCAN-208ENST00000512590 PTPRCP08575 1304 aa9.96□□□□□ -0.82
VCAN-208ENST00000512590 EPB41P11171 864 aaKnown RBP9.95□□□□□ -0.82
VCAN-208ENST00000512590 RTN1Q16799 776 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 PDZD4Q76G19 769 aaPredicted RBP9.95□□□□□ -0.82
VCAN-208ENST00000512590 TTC25Q96NG3 672 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 NEUROG2Q9H2A3 272 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 NFKBIL1Q9UBC1 381 aaPredicted RBP9.95□□□□□ -0.82
VCAN-208ENST00000512590 RAB23Q9ULC3 237 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 TPCN1Q9ULQ1 816 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 TLR3O15455 904 aaKnown RBP9.95□□□□□ -0.82
VCAN-208ENST00000512590 BMP15O95972 392 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 SUPT20HL1Q3ZLR7 823 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 RUFY4Q6ZNE9 571 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 SEPT14Q6ZU15 432 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 OTUD6AQ7L8S5 288 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 MYL3P08590 195 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 NNMTP40261 264 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 TSR2Q969E8 191 aaKnown RBP9.95□□□□□ -0.82
VCAN-208ENST00000512590 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.95□□□□□ -0.82
VCAN-208ENST00000512590 SYTL2Q9HCH5 934 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 RTL9Q8NET4 1388 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 ANKRD30BQ9BXX2 1392 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 SLC4A1P02730 911 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 ATICP31939 592 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 MCM7P33993 719 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 ZNF75DP51815 510 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 FLIIQ13045 1269 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 BSPRYQ5W0U4 402 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 UBE3BQ7Z3V4 1068 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 ATP2A3Q93084 1043 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 MFSD1Q9H3U5 465 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 MTUS1Q9ULD2 1270 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 CIB2O75838 187 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 FMNL3Q8IVF7 1028 aa9.95□□□□□ -0.82
VCAN-208ENST00000512590 CASQ2O14958 399 aaPredicted RBP9.94□□□□□ -0.82
VCAN-208ENST00000512590 RAPGEF1Q13905 1077 aa9.94□□□□□ -0.82
VCAN-208ENST00000512590 PUM3Q15397 648 aaKnown RBP9.94□□□□□ -0.82
VCAN-208ENST00000512590 DCUN1D2Q6PH85 259 aa9.94□□□□□ -0.82
VCAN-208ENST00000512590 CEP120Q8N960 986 aa9.94□□□□□ -0.82
VCAN-208ENST00000512590 OPTNQ96CV9 577 aa9.94□□□□□ -0.82
VCAN-208ENST00000512590 TNNC2P02585 160 aa9.94□□□□□ -0.82
VCAN-208ENST00000512590 IREB2P48200 963 aaKnown RBP9.94□□□□□ -0.82
VCAN-208ENST00000512590 CCDC25Q86WR0 208 aa9.94□□□□□ -0.82
VCAN-208ENST00000512590 EHBP1Q8NDI1 1231 aa9.94□□□□□ -0.82
VCAN-208ENST00000512590 SELENOSQ9BQE4 189 aa9.94□□□□□ -0.82
VCAN-208ENST00000512590 MAP3K20Q9NYL2 800 aaKnown RBP9.94□□□□□ -0.82
VCAN-208ENST00000512590 FARP1Q9Y4F1 1045 aaPredicted RBP9.94□□□□□ -0.82
VCAN-208ENST00000512590 ZMYND10O75800 440 aa9.94□□□□□ -0.82
VCAN-208ENST00000512590 CTR9Q6PD62 1173 aa9.94□□□□□ -0.82
VCAN-208ENST00000512590 MYLK4Q86YV6 388 aaPredicted RBP9.94□□□□□ -0.82
VCAN-208ENST00000512590 CCDC170Q8IYT3 715 aa9.94□□□□□ -0.82
VCAN-208ENST00000512590 TSC1Q92574 1164 aa9.94□□□□□ -0.82
VCAN-208ENST00000512590 HMGB3O15347 200 aaKnown RBP9.94□□□□□ -0.82
VCAN-208ENST00000512590 GSTA1P08263 222 aa9.94□□□□□ -0.82
VCAN-208ENST00000512590 GSTA2P09210 222 aa9.94□□□□□ -0.82
VCAN-208ENST00000512590 FAM160B1Q5W0V3 765 aa9.94□□□□□ -0.82
VCAN-208ENST00000512590 NR1H4Q96RI1 486 aaPredicted RBP9.94□□□□□ -0.82
VCAN-208ENST00000512590 SEC62Q99442 399 aaKnown RBP9.94□□□□□ -0.82
VCAN-208ENST00000512590 DYRK4Q9NR20 520 aa9.94□□□□□ -0.82
VCAN-208ENST00000512590 KCNG1Q9UIX4 513 aa9.94□□□□□ -0.82
VCAN-208ENST00000512590 TMPOP42166 694 aaKnown RBP9.94□□□□□ -0.82
VCAN-208ENST00000512590 GOLGA8FQ08AF8 430 aa9.94□□□□□ -0.82
VCAN-208ENST00000512590 GOLGA8DPQ0D2H9 430 aa9.94□□□□□ -0.82
VCAN-208ENST00000512590 IQCB1Q15051 598 aa9.94□□□□□ -0.82
VCAN-208ENST00000512590 SDCCAG8Q86SQ7 713 aaPredicted RBP9.94□□□□□ -0.82
VCAN-208ENST00000512590 TEKT4Q8WW24 435 aa9.94□□□□□ -0.82
VCAN-208ENST00000512590 JARID2Q92833 1246 aaPredicted RBP9.94□□□□□ -0.82
VCAN-208ENST00000512590 ZKSCAN5Q9Y2L8 839 aa9.94□□□□□ -0.82
VCAN-208ENST00000512590 TESPA1A2RU30 521 aaPredicted RBP9.93□□□□□ -0.82
VCAN-208ENST00000512590 EPHB1P54762 984 aa9.93□□□□□ -0.82
VCAN-208ENST00000512590 KRT83P78385 493 aa9.93□□□□□ -0.82
VCAN-208ENST00000512590 TAF11Q15544 211 aa9.93□□□□□ -0.82
VCAN-208ENST00000512590 USH1GQ495M9 461 aa9.93□□□□□ -0.82
VCAN-208ENST00000512590 ST7Q9NRC1 585 aa9.93□□□□□ -0.82
VCAN-208ENST00000512590 STMN1P16949 149 aa9.93□□□□□ -0.82
VCAN-208ENST00000512590 CALCOCO2Q13137 446 aa9.93□□□□□ -0.82
VCAN-208ENST00000512590 SETDB1Q15047 1291 aa9.93□□□□□ -0.82
VCAN-208ENST00000512590 GPR161Q8N6U8 529 aaKnown RBP9.93□□□□□ -0.82
VCAN-208ENST00000512590 PPP4R1Q8TF05 950 aa9.93□□□□□ -0.82
VCAN-208ENST00000512590 HVCN1Q96D96 273 aa9.93□□□□□ -0.82
VCAN-208ENST00000512590 AKT3Q9Y243 479 aa9.93□□□□□ -0.82
VCAN-208ENST00000512590 TCP10L2B9ZVM9 353 aa9.93□□□□□ -0.82
VCAN-208ENST00000512590 N4BP3O15049 544 aa9.93□□□□□ -0.82
VCAN-208ENST00000512590 CETN3O15182 167 aa9.93□□□□□ -0.82
VCAN-208ENST00000512590 AFMP43652 599 aa9.93□□□□□ -0.82
VCAN-208ENST00000512590 SEMA3FQ13275 785 aa9.93□□□□□ -0.82
VCAN-208ENST00000512590 KRT81Q14533 505 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms