RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 PHIPQ8WWQ0 1821 aa13.81□□□□□ -0.2
LIMCH1-214ENST00000512228 FAM196BA6NMK8 535 aa13.81□□□□□ -0.2
LIMCH1-214ENST00000512228 TLR2O60603 784 aa13.81□□□□□ -0.2
LIMCH1-214ENST00000512228 ENTPD3O75355 529 aa13.81□□□□□ -0.2
LIMCH1-214ENST00000512228 ARID4AP29374 1257 aaPredicted RBP13.81□□□□□ -0.2
LIMCH1-214ENST00000512228 SNAPC2Q13487 334 aa13.81□□□□□ -0.2
LIMCH1-214ENST00000512228 PICALMQ13492 652 aa13.81□□□□□ -0.2
LIMCH1-214ENST00000512228 MVPQ14764 893 aaKnown RBP13.81□□□□□ -0.2
LIMCH1-214ENST00000512228 GPAT2Q6NUI2 795 aa13.81□□□□□ -0.2
LIMCH1-214ENST00000512228 ERICH6Q7L0X2 663 aa13.81□□□□□ -0.2
LIMCH1-214ENST00000512228 DZIP1Q86YF9 867 aaKnown RBP13.81□□□□□ -0.2
LIMCH1-214ENST00000512228 PANK1Q8TE04 598 aa13.81□□□□□ -0.2
LIMCH1-214ENST00000512228 EFCC1Q9HA90 598 aa13.81□□□□□ -0.2
LIMCH1-214ENST00000512228 KCNH4Q9UQ05 1017 aa13.81□□□□□ -0.2
LIMCH1-214ENST00000512228 DOCK2Q92608 1830 aa13.8□□□□□ -0.2
LIMCH1-214ENST00000512228 TNNI3KQ59H18 835 aa13.8□□□□□ -0.2
LIMCH1-214ENST00000512228 NOL9Q5SY16 702 aaKnown RBP13.8□□□□□ -0.2
LIMCH1-214ENST00000512228 C17orf99Q6UX52 265 aa13.8□□□□□ -0.2
LIMCH1-214ENST00000512228 ADGRA1Q86SQ6 560 aa13.8□□□□□ -0.2
LIMCH1-214ENST00000512228 TLR7Q9NYK1 1049 aaKnown RBP13.8□□□□□ -0.2
LIMCH1-214ENST00000512228 CPA4Q9UI42 421 aa13.8□□□□□ -0.2
LIMCH1-214ENST00000512228 PTCH2Q9Y6C5 1203 aa13.8□□□□□ -0.2
LIMCH1-214ENST00000512228 FPGT-TNNI3KV9GXZ4 949 aa13.8□□□□□ -0.2
LIMCH1-214ENST00000512228 MROH7-TTC4A0A0A0MT08 1334 aa13.8□□□□□ -0.2
LIMCH1-214ENST00000512228 SURF6O75683 361 aaKnown RBP13.79□□□□□ -0.2
LIMCH1-214ENST00000512228 EN2P19622 333 aaPredicted RBP13.79□□□□□ -0.2
LIMCH1-214ENST00000512228 ZGPATQ8N5A5 531 aaKnown RBP13.79□□□□□ -0.2
LIMCH1-214ENST00000512228 EAF2Q96CJ1 260 aaPredicted RBP13.79□□□□□ -0.2
LIMCH1-214ENST00000512228 HOOK2Q96ED9 719 aa13.79□□□□□ -0.2
LIMCH1-214ENST00000512228 NOP58Q9Y2X3 529 aaKnown RBP13.79□□□□□ -0.2
LIMCH1-214ENST00000512228 ZHX2Q9Y6X8 837 aa13.79□□□□□ -0.2
LIMCH1-214ENST00000512228 ADGRA2Q96PE1 1338 aa13.79□□□□□ -0.2
LIMCH1-214ENST00000512228 CDK5RAP2Q96SN8 1893 aa13.78□□□□□ -0.2
LIMCH1-214ENST00000512228 PTPRFP10586 1907 aa13.78□□□□□ -0.2
LIMCH1-214ENST00000512228 KIAA0100Q14667 2235 aaKnown RBP13.78□□□□□ -0.2
LIMCH1-214ENST00000512228 PDHXO00330 501 aa13.78□□□□□ -0.2
LIMCH1-214ENST00000512228 CYP2E1P05181 493 aaPredicted RBP13.78□□□□□ -0.2
LIMCH1-214ENST00000512228 CYP2C8P10632 490 aa13.78□□□□□ -0.2
LIMCH1-214ENST00000512228 PTPRAP18433 802 aa13.78□□□□□ -0.2
LIMCH1-214ENST00000512228 JAG1P78504 1218 aa13.78□□□□□ -0.2
LIMCH1-214ENST00000512228 LACTBP83111 547 aaPredicted RBP13.78□□□□□ -0.2
LIMCH1-214ENST00000512228 GORABQ5T7V8 394 aa13.78□□□□□ -0.2
LIMCH1-214ENST00000512228 SPTY2D1Q68D10 685 aaPredicted RBP13.78□□□□□ -0.2
LIMCH1-214ENST00000512228 ITPRIPQ8IWB1 547 aa13.78□□□□□ -0.2
LIMCH1-214ENST00000512228 ZSCAN29Q8IWY8 852 aaPredicted RBP13.78□□□□□ -0.2
LIMCH1-214ENST00000512228 SH3RF3Q8TEJ3 882 aaPredicted RBP13.78□□□□□ -0.2
LIMCH1-214ENST00000512228 ARMC5Q96C12 935 aa13.78□□□□□ -0.2
LIMCH1-214ENST00000512228 CCDC8Q9H0W5 538 aaPredicted RBP13.78□□□□□ -0.2
LIMCH1-214ENST00000512228 PIH1D3Q9NQM4 214 aaKnown RBP13.78□□□□□ -0.2
LIMCH1-214ENST00000512228 RAI14Q9P0K7 980 aa13.78□□□□□ -0.2
LIMCH1-214ENST00000512228 AFG3L2Q9Y4W6 797 aa13.78□□□□□ -0.2
LIMCH1-214ENST00000512228 NDUFB9Q9Y6M9 179 aa13.78□□□□□ -0.2
LIMCH1-214ENST00000512228 SIPA1L1O43166 1804 aa13.77□□□□□ -0.21
LIMCH1-214ENST00000512228 MYCP01106 439 aaPredicted RBP13.77□□□□□ -0.21
LIMCH1-214ENST00000512228 ANKRD23Q86SG2 305 aa13.77□□□□□ -0.21
LIMCH1-214ENST00000512228 SCYL3Q8IZE3 742 aa13.77□□□□□ -0.21
LIMCH1-214ENST00000512228 GPR108Q9NPR9 543 aa13.77□□□□□ -0.21
LIMCH1-214ENST00000512228 DBNLQ9UJU6 430 aaKnown RBP13.77□□□□□ -0.21
LIMCH1-214ENST00000512228 HTTP42858 3142 aa13.77□□□□□ -0.21
LIMCH1-214ENST00000512228 PDE4DIPQ5VU43 2346 aa13.76□□□□□ -0.21
LIMCH1-214ENST00000512228 DOCK3Q8IZD9 2030 aa13.76□□□□□ -0.21
LIMCH1-214ENST00000512228 ZAP70P43403 619 aa13.76□□□□□ -0.21
LIMCH1-214ENST00000512228 SHROOM1Q2M3G4 852 aaPredicted RBP13.76□□□□□ -0.21
LIMCH1-214ENST00000512228 CEP85Q6P2H3 762 aa13.76□□□□□ -0.21
LIMCH1-214ENST00000512228 SH3TC2Q8TF17 1288 aa13.76□□□□□ -0.21
LIMCH1-214ENST00000512228 TRIM47Q96LD4 638 aa13.76□□□□□ -0.21
LIMCH1-214ENST00000512228 ZBED9Q6R2W3 1325 aa13.75□□□□□ -0.21
LIMCH1-214ENST00000512228 CXCL11O14625 94 aa13.75□□□□□ -0.21
LIMCH1-214ENST00000512228 UQCRFS1P1P0C7P4 283 aa13.75□□□□□ -0.21
LIMCH1-214ENST00000512228 SIRT2Q8IXJ6 389 aa13.75□□□□□ -0.21
LIMCH1-214ENST00000512228 ZNF333Q96JL9 665 aa13.75□□□□□ -0.21
LIMCH1-214ENST00000512228 ANTXR1Q9H6X2 564 aa13.75□□□□□ -0.21
LIMCH1-214ENST00000512228 ZCCHC17Q9NP64 241 aaKnown RBP13.75□□□□□ -0.21
LIMCH1-214ENST00000512228 AATFQ9NY61 560 aaKnown RBP eCLIP13.75□□□□□ -0.21
LIMCH1-214ENST00000512228 LRP2BPQ9P2M1 347 aa13.75□□□□□ -0.21
LIMCH1-214ENST00000512228 MGAMO43451 1857 aa13.75□□□□□ -0.21
LIMCH1-214ENST00000512228 DOCK1Q14185 1865 aa13.75□□□□□ -0.21
LIMCH1-214ENST00000512228 CENPFP49454 3210 aa13.75□□□□□ -0.21
LIMCH1-214ENST00000512228 RBBP6Q7Z6E9 1792 aaKnown RBP13.74□□□□□ -0.21
LIMCH1-214ENST00000512228 A0A0G2JLL6 359 aaPredicted RBP13.74□□□□□ -0.21
LIMCH1-214ENST00000512228 TBC1D12O60347 775 aa13.74□□□□□ -0.21
LIMCH1-214ENST00000512228 CTNND1O60716 968 aaKnown RBP13.74□□□□□ -0.21
LIMCH1-214ENST00000512228 NPM3O75607 178 aaKnown RBP13.74□□□□□ -0.21
LIMCH1-214ENST00000512228 BCRP11274 1271 aa13.74□□□□□ -0.21
LIMCH1-214ENST00000512228 DYNLL1P63167 89 aaKnown RBP13.74□□□□□ -0.21
LIMCH1-214ENST00000512228 OS9Q13438 667 aaPredicted RBP13.74□□□□□ -0.21
LIMCH1-214ENST00000512228 TTC39AQ5SRH9 613 aa13.74□□□□□ -0.21
LIMCH1-214ENST00000512228 PRRT2Q7Z6L0 340 aaPredicted RBP13.74□□□□□ -0.21
LIMCH1-214ENST00000512228 SLF2Q8IX21 1173 aa13.74□□□□□ -0.21
LIMCH1-214ENST00000512228 FTSJ3Q8IY81 847 aaKnown RBP13.74□□□□□ -0.21
LIMCH1-214ENST00000512228 OSBPL5Q9H0X9 879 aaPredicted RBP13.74□□□□□ -0.21
LIMCH1-214ENST00000512228 EXOC6BQ9Y2D4 811 aa13.74□□□□□ -0.21
LIMCH1-214ENST00000512228 ATAD5Q96QE3 1844 aa13.74□□□□□ -0.21
LIMCH1-214ENST00000512228 TRIM75PA6NK02 468 aa13.73□□□□□ -0.21
LIMCH1-214ENST00000512228 LDHCP07864 332 aa13.73□□□□□ -0.21
LIMCH1-214ENST00000512228 PSMC4P43686 418 aa13.73□□□□□ -0.21
LIMCH1-214ENST00000512228 PPP4CP60510 307 aa13.73□□□□□ -0.21
LIMCH1-214ENST00000512228 TREML2Q5T2D2 321 aa13.73□□□□□ -0.21
LIMCH1-214ENST00000512228 ZNF512BQ96KM6 892 aaPredicted RBP13.73□□□□□ -0.21
LIMCH1-214ENST00000512228 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms