RNA–Protein interactions for RNA: ENST00000509206.1

RNF4-211, Transcript of ring finger protein 4, human

TSL 3

Gene RNF4, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-211	ENST00000509206	PPP4R3B	Q5MIZ7	849 aa		5	□□□□□ -1.61
RNF4-211	ENST00000509206	POTEB	Q6S5H4	581 aa		5	□□□□□ -1.61
RNF4-211	ENST00000509206	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	5	□□□□□ -1.61
RNF4-211	ENST00000509206	PRMT6	Q96LA8	375 aa	Predicted RBP	5	□□□□□ -1.61
RNF4-211	ENST00000509206	ASB2	Q96Q27	587 aa		5	□□□□□ -1.61
RNF4-211	ENST00000509206	GAS2L1	Q99501	681 aa	Predicted RBP	5	□□□□□ -1.61
RNF4-211	ENST00000509206	P2RX7	Q99572	595 aa	Known RBP	5	□□□□□ -1.61
RNF4-211	ENST00000509206	RSPH6A	Q9H0K4	717 aa		5	□□□□□ -1.61
RNF4-211	ENST00000509206	PAK6	Q9NQU5	681 aa	Predicted RBP	5	□□□□□ -1.61
RNF4-211	ENST00000509206	TSPYL4	Q9UJ04	414 aa		5	□□□□□ -1.61
RNF4-211	ENST00000509206	KCNH4	Q9UQ05	1017 aa		5	□□□□□ -1.61
RNF4-211	ENST00000509206	LEMD3	Q9Y2U8	911 aa		5	□□□□□ -1.61
RNF4-211	ENST00000509206	PCDHGA10	Q9Y5H3	936 aa		5	□□□□□ -1.61
RNF4-211	ENST00000509206	MED23	Q9ULK4	1368 aa		5	□□□□□ -1.61
RNF4-211	ENST00000509206	DDX60	Q8IY21	1712 aa	Known RBP	5	□□□□□ -1.61
RNF4-211	ENST00000509206	SCN9A	Q15858	1988 aa		4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	PDE8A	O60658	829 aa		4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	IGHMBP2	P38935	993 aa	Known RBP	4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	PPAT	Q06203	517 aa		4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	IRF5	Q13568	498 aa		4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	PDE3A	Q14432	1141 aa		4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	TMEM31	Q5JXX7	168 aa		4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	TYW1B	Q6NUM6	668 aa		4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	RIC3	Q7Z5B4	369 aa		4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	ZNF687	Q8N1G0	1237 aa		4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	ZNF454	Q8N9F8	522 aa		4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	PLBD2	Q8NHP8	589 aa		4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	SMCR8	Q8TEV9	937 aa	Predicted RBP	4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	ZKSCAN4	Q969J2	545 aa	Predicted RBP	4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	WRNIP1	Q96S55	665 aa		4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	LRFN3	Q9BTN0	628 aa		4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	ANKRD2	Q9GZV1	360 aa		4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	NPDC1	Q9NQX5	325 aa	Predicted RBP	4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	TMOD2	Q9NZR1	351 aa		4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	THEG	Q9P2T0	379 aa		4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	ZNF70	Q9UC06	446 aa	Predicted RBP	4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	MINPP1	Q9UNW1	487 aa		4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	PCDHAC2	Q9Y5I4	1007 aa		4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	ZNF646	O15015	1829 aa	Predicted RBP	4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	ANKRD36C	Q5JPF3	1778 aa		4.99	□□□□□ -1.61
RNF4-211	ENST00000509206	HMGCR	P04035	888 aa		4.98	□□□□□ -1.61
RNF4-211	ENST00000509206	CYP2C8	P10632	490 aa		4.98	□□□□□ -1.61
RNF4-211	ENST00000509206	SMAD3	P84022	425 aa	Known RBP	4.98	□□□□□ -1.61
RNF4-211	ENST00000509206	SHH	Q15465	462 aa		4.98	□□□□□ -1.61
RNF4-211	ENST00000509206	CCDC85B	Q15834	202 aa	Predicted RBP	4.98	□□□□□ -1.61
RNF4-211	ENST00000509206	TSR1	Q2NL82	804 aa	Known RBP	4.98	□□□□□ -1.61
RNF4-211	ENST00000509206	DCAF15	Q66K64	600 aa		4.98	□□□□□ -1.61
RNF4-211	ENST00000509206	MPHOSPH8	Q99549	860 aa		4.98	□□□□□ -1.61
RNF4-211	ENST00000509206	ISCA1	Q9BUE6	129 aa		4.98	□□□□□ -1.61
RNF4-211	ENST00000509206	TMEM39B	Q9GZU3	492 aa		4.98	□□□□□ -1.61
RNF4-211	ENST00000509206	TDRD3	Q9H7E2	651 aa	Known RBP	4.98	□□□□□ -1.61
RNF4-211	ENST00000509206	CD209	Q9NNX6	404 aa		4.98	□□□□□ -1.61
RNF4-211	ENST00000509206	BSDC1	Q9NW68	430 aa	Predicted RBP	4.98	□□□□□ -1.61
RNF4-211	ENST00000509206	SIPA1L3	O60292	1781 aa	Predicted RBP	4.98	□□□□□ -1.61
RNF4-211	ENST00000509206	SSC5D	A1L4H1	1573 aa		4.97	□□□□□ -1.61
RNF4-211	ENST00000509206	BCR	P11274	1271 aa		4.97	□□□□□ -1.61
RNF4-211	ENST00000509206	IGFBP4	P22692	258 aa		4.97	□□□□□ -1.61
RNF4-211	ENST00000509206	PBX2	P40425	430 aa		4.97	□□□□□ -1.61
RNF4-211	ENST00000509206	MRE11	P49959	708 aa		4.97	□□□□□ -1.61
RNF4-211	ENST00000509206	LRRC26	Q2I0M4	334 aa		4.97	□□□□□ -1.61
RNF4-211	ENST00000509206	AAK1	Q2M2I8	961 aa		4.97	□□□□□ -1.61
RNF4-211	ENST00000509206	GADL1	Q6ZQY3	521 aa		4.97	□□□□□ -1.61
RNF4-211	ENST00000509206	MIGA2	Q7L4E1	593 aa		4.97	□□□□□ -1.61
RNF4-211	ENST00000509206	FASTKD5	Q7L8L6	764 aa	Known RBP	4.97	□□□□□ -1.61
RNF4-211	ENST00000509206	ZNF804A	Q7Z570	1209 aa		4.97	□□□□□ -1.61
RNF4-211	ENST00000509206	TXNRD3	Q86VQ6	643 aa		4.97	□□□□□ -1.61
RNF4-211	ENST00000509206	USP38	Q8NB14	1042 aa		4.97	□□□□□ -1.61
RNF4-211	ENST00000509206	JARID2	Q92833	1246 aa	Predicted RBP	4.97	□□□□□ -1.61
RNF4-211	ENST00000509206	ZNF341	Q9BYN7	854 aa		4.97	□□□□□ -1.61
RNF4-211	ENST00000509206	SENP6	Q9GZR1	1112 aa	Predicted RBP	4.97	□□□□□ -1.61
RNF4-211	ENST00000509206	TTYH1	Q9H313	450 aa	Predicted RBP	4.97	□□□□□ -1.61
RNF4-211	ENST00000509206	PRDM5	Q9NQX1	630 aa	Predicted RBP	4.97	□□□□□ -1.61
RNF4-211	ENST00000509206	OGDHL	Q9ULD0	1010 aa		4.97	□□□□□ -1.61
RNF4-211	ENST00000509206	TTF2	Q9UNY4	1162 aa	Known RBP	4.97	□□□□□ -1.61
RNF4-211	ENST00000509206	JAG2	Q9Y219	1238 aa		4.97	□□□□□ -1.61
RNF4-211	ENST00000509206	SNCAIP	Q9Y6H5	919 aa		4.97	□□□□□ -1.61
RNF4-211	ENST00000509206	SPTBN5	Q9NRC6	3674 aa	Known RBP	4.96	□□□□□ -1.62
RNF4-211	ENST00000509206	PCCA	P05165	728 aa	Predicted RBP	4.96	□□□□□ -1.62
RNF4-211	ENST00000509206	MS4A1	P11836	297 aa		4.96	□□□□□ -1.62
RNF4-211	ENST00000509206	CLCN1	P35523	988 aa		4.96	□□□□□ -1.62
RNF4-211	ENST00000509206	FOSB	P53539	338 aa		4.96	□□□□□ -1.62
RNF4-211	ENST00000509206	TRIM28	Q13263	835 aa	Known RBP	4.96	□□□□□ -1.62
RNF4-211	ENST00000509206	GRIN2C	Q14957	1233 aa		4.96	□□□□□ -1.62
RNF4-211	ENST00000509206	SKIV2L	Q15477	1246 aa	Known RBP	4.96	□□□□□ -1.62
RNF4-211	ENST00000509206	LRP10	Q7Z4F1	713 aa		4.96	□□□□□ -1.62
RNF4-211	ENST00000509206	CCAR1	Q8IX12	1150 aa	Known RBP	4.96	□□□□□ -1.62
RNF4-211	ENST00000509206	DZIP1L	Q8IYY4	767 aa	Known RBP	4.96	□□□□□ -1.62
RNF4-211	ENST00000509206	CERS5	Q8N5B7	392 aa		4.96	□□□□□ -1.62
RNF4-211	ENST00000509206	UIMC1	Q96RL1	719 aa		4.96	□□□□□ -1.62
RNF4-211	ENST00000509206	MYD88	Q99836	296 aa		4.96	□□□□□ -1.62
RNF4-211	ENST00000509206	REPIN1	Q9BWE0	567 aa	Known RBP	4.96	□□□□□ -1.62
RNF4-211	ENST00000509206	PNN	Q9H307	717 aa	Known RBP	4.96	□□□□□ -1.62
RNF4-211	ENST00000509206	EPHX3	Q9H6B9	360 aa		4.96	□□□□□ -1.62
RNF4-211	ENST00000509206	ATP11B	Q9Y2G3	1177 aa		4.96	□□□□□ -1.62
RNF4-211	ENST00000509206	LRRC37A	A6NMS7	1700 aa		4.96	□□□□□ -1.62
RNF4-211	ENST00000509206	PIEZO1	Q92508	2521 aa		4.96	□□□□□ -1.62
RNF4-211	ENST00000509206	MAPK8IP3	Q9UPT6	1336 aa		4.96	□□□□□ -1.62
RNF4-211	ENST00000509206	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	4.95	□□□□□ -1.62

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