RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 FOCADQ5VW36 1801 aa16.02■□□□□ 0.16
TCOF1-209ENST00000506630 USP2O75604 605 aaPredicted RBP16.01■□□□□ 0.15
TCOF1-209ENST00000506630 TNNI2P48788 182 aa16.01■□□□□ 0.15
TCOF1-209ENST00000506630 NBPF11Q86T75 865 aa16.01■□□□□ 0.15
TCOF1-209ENST00000506630 SLF2Q8IX21 1173 aa16.01■□□□□ 0.15
TCOF1-209ENST00000506630 TEPSINQ96N21 525 aa16.01■□□□□ 0.15
TCOF1-209ENST00000506630 LRP2BPQ9P2M1 347 aa16.01■□□□□ 0.15
TCOF1-209ENST00000506630 TESPA1A2RU30 521 aaPredicted RBP16■□□□□ 0.15
TCOF1-209ENST00000506630 SMARCA5O60264 1052 aaPredicted RBP16■□□□□ 0.15
TCOF1-209ENST00000506630 GJA5P36382 358 aa16■□□□□ 0.15
TCOF1-209ENST00000506630 ZAP70P43403 619 aa16■□□□□ 0.15
TCOF1-209ENST00000506630 MECOMQ03112 1051 aa16■□□□□ 0.15
TCOF1-209ENST00000506630 DCTPP1Q9H773 170 aa16■□□□□ 0.15
TCOF1-209ENST00000506630 MROH7-TTC4A0A0A0MT08 1334 aa15.99■□□□□ 0.15
TCOF1-209ENST00000506630 GAKO14976 1311 aa15.99■□□□□ 0.15
TCOF1-209ENST00000506630 CYP2E1P05181 493 aaPredicted RBP15.99■□□□□ 0.15
TCOF1-209ENST00000506630 NSUN4Q96CB9 384 aaKnown RBP15.99■□□□□ 0.15
TCOF1-209ENST00000506630 OPTNQ96CV9 577 aa15.99■□□□□ 0.15
TCOF1-209ENST00000506630 PTPN18Q99952 460 aa15.99■□□□□ 0.15
TCOF1-209ENST00000506630 TMEM39BQ9GZU3 492 aa15.99■□□□□ 0.15
TCOF1-209ENST00000506630 ELP3Q9H9T3 547 aa15.99■□□□□ 0.15
TCOF1-209ENST00000506630 NDUFB9Q9Y6M9 179 aa15.99■□□□□ 0.15
TCOF1-209ENST00000506630 WDHD1O75717 1129 aaPredicted RBP15.98■□□□□ 0.15
TCOF1-209ENST00000506630 BTDP43251 543 aa15.98■□□□□ 0.15
TCOF1-209ENST00000506630 GSTO1P78417 241 aa15.98■□□□□ 0.15
TCOF1-209ENST00000506630 AAMPQ13685 434 aa15.98■□□□□ 0.15
TCOF1-209ENST00000506630 SLC9C1Q4G0N8 1177 aa15.98■□□□□ 0.15
TCOF1-209ENST00000506630 CDC42EP5Q6NZY7 148 aa15.98■□□□□ 0.15
TCOF1-209ENST00000506630 EXOC6Q8TAG9 804 aa15.98■□□□□ 0.15
TCOF1-209ENST00000506630 ZNF333Q96JL9 665 aa15.98■□□□□ 0.15
TCOF1-209ENST00000506630 ZFYVE28Q9HCC9 887 aa15.98■□□□□ 0.15
TCOF1-209ENST00000506630 USP40Q9NVE5 1235 aa15.98■□□□□ 0.15
TCOF1-209ENST00000506630 MYH1P12882 1939 aa15.98■□□□□ 0.15
TCOF1-209ENST00000506630 FXR1P51114 621 aaKnown RBP eCLIP15.97■□□□□ 0.15
TCOF1-209ENST00000506630 TAF1CQ15572 869 aaPredicted RBP15.97■□□□□ 0.15
TCOF1-209ENST00000506630 SLC4A8Q2Y0W8 1093 aa15.97■□□□□ 0.15
TCOF1-209ENST00000506630 NAA16Q6N069 864 aaPredicted RBP15.97■□□□□ 0.15
TCOF1-209ENST00000506630 ZNF384Q8TF68 577 aa15.97■□□□□ 0.15
TCOF1-209ENST00000506630 PIH1D3Q9NQM4 214 aaKnown RBP15.97■□□□□ 0.15
TCOF1-209ENST00000506630 LDHCP07864 332 aa15.96■□□□□ 0.15
TCOF1-209ENST00000506630 GTF2A2P52657 109 aa15.96■□□□□ 0.15
TCOF1-209ENST00000506630 IRX6P78412 446 aaPredicted RBP15.96■□□□□ 0.15
TCOF1-209ENST00000506630 FKBP1CQ5VVH2 108 aa15.96■□□□□ 0.15
TCOF1-209ENST00000506630 FAM83AQ86UY5 434 aa15.96■□□□□ 0.15
TCOF1-209ENST00000506630 FAM163AQ96GL9 167 aaPredicted RBP15.96■□□□□ 0.15
TCOF1-209ENST00000506630 MS4A4AQ96JQ5 239 aa15.96■□□□□ 0.15
TCOF1-209ENST00000506630 DNAJC2Q99543 621 aaKnown RBP15.96■□□□□ 0.15
TCOF1-209ENST00000506630 CCL15-CCL14A0A0B4J2E2 113 aa15.95■□□□□ 0.14
TCOF1-209ENST00000506630 IDH1O75874 414 aaKnown RBP15.95■□□□□ 0.14
TCOF1-209ENST00000506630 TCP10Q12799 353 aa15.95■□□□□ 0.14
TCOF1-209ENST00000506630 NFIAQ12857 509 aa15.95■□□□□ 0.14
TCOF1-209ENST00000506630 CCL15Q16663 113 aa15.95■□□□□ 0.14
TCOF1-209ENST00000506630 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.95■□□□□ 0.14
TCOF1-209ENST00000506630 NOL10Q9BSC4 688 aaKnown RBP15.95■□□□□ 0.14
TCOF1-209ENST00000506630 ANTXR1Q9H6X2 564 aa15.95■□□□□ 0.14
TCOF1-209ENST00000506630 COLQQ9Y215 455 aaPredicted RBP15.95■□□□□ 0.14
TCOF1-209ENST00000506630 CSADQ9Y600 493 aa15.95■□□□□ 0.14
TCOF1-209ENST00000506630 PTCH2Q9Y6C5 1203 aa15.95■□□□□ 0.14
TCOF1-209ENST00000506630 RPAP1Q9BWH6 1393 aaPredicted RBP15.95■□□□□ 0.14
TCOF1-209ENST00000506630 KIAA0100Q14667 2235 aaKnown RBP15.95■□□□□ 0.14
TCOF1-209ENST00000506630 LAMB1P07942 1786 aa15.95■□□□□ 0.14
TCOF1-209ENST00000506630 GPR75-ASB3A0A0A6YYF3 556 aa15.94■□□□□ 0.14
TCOF1-209ENST00000506630 MAP3K9P80192 1104 aa15.94■□□□□ 0.14
TCOF1-209ENST00000506630 HDAC1Q13547 482 aaPredicted RBP15.94■□□□□ 0.14
TCOF1-209ENST00000506630 KIF22Q14807 665 aa15.94■□□□□ 0.14
TCOF1-209ENST00000506630 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.94■□□□□ 0.14
TCOF1-209ENST00000506630 BRI3BPQ8WY22 251 aa15.94■□□□□ 0.14
TCOF1-209ENST00000506630 BOLA2Q9H3K6 86 aa15.94■□□□□ 0.14
TCOF1-209ENST00000506630 ZBTB47Q9UFB7 747 aaPredicted RBP15.94■□□□□ 0.14
TCOF1-209ENST00000506630 RFX7Q2KHR2 1363 aa15.94■□□□□ 0.14
TCOF1-209ENST00000506630 NAV1Q8NEY1 1877 aa15.94■□□□□ 0.14
TCOF1-209ENST00000506630 RBBP6Q7Z6E9 1792 aaKnown RBP15.93■□□□□ 0.14
TCOF1-209ENST00000506630 GOLIM4O00461 696 aa15.93■□□□□ 0.14
TCOF1-209ENST00000506630 SLURP2P0DP57 97 aa15.93■□□□□ 0.14
TCOF1-209ENST00000506630 RGS3P49796 1198 aa15.93■□□□□ 0.14
TCOF1-209ENST00000506630 CAP1Q01518 475 aa15.93■□□□□ 0.14
TCOF1-209ENST00000506630 MAP3K12Q12852 859 aa15.93■□□□□ 0.14
TCOF1-209ENST00000506630 PICALMQ13492 652 aa15.93■□□□□ 0.14
TCOF1-209ENST00000506630 TTF1Q15361 905 aaPredicted RBP15.93■□□□□ 0.14
TCOF1-209ENST00000506630 FAM151AQ8WW52 585 aa15.93■□□□□ 0.14
TCOF1-209ENST00000506630 GPATCH3Q96I76 525 aa15.93■□□□□ 0.14
TCOF1-209ENST00000506630 AATFQ9NY61 560 aaKnown RBP eCLIP15.93■□□□□ 0.14
TCOF1-209ENST00000506630 FAM198AQ9UFP1 575 aa15.93■□□□□ 0.14
TCOF1-209ENST00000506630 ATAD5Q96QE3 1844 aa15.93■□□□□ 0.14
TCOF1-209ENST00000506630 IGSF3O75054 1194 aa15.92■□□□□ 0.14
TCOF1-209ENST00000506630 MYCP01106 439 aaPredicted RBP15.92■□□□□ 0.14
TCOF1-209ENST00000506630 ATP5JP18859 108 aa15.92■□□□□ 0.14
TCOF1-209ENST00000506630 CYP7A1P22680 504 aa15.92■□□□□ 0.14
TCOF1-209ENST00000506630 VGLL4Q14135 290 aa15.92■□□□□ 0.14
TCOF1-209ENST00000506630 ZFPM1Q8IX07 1006 aa15.92■□□□□ 0.14
TCOF1-209ENST00000506630 MAGEB6Q8N7X4 407 aa15.92■□□□□ 0.14
TCOF1-209ENST00000506630 OTUD5Q96G74 571 aa15.92■□□□□ 0.14
TCOF1-209ENST00000506630 IDI2Q9BXS1 227 aa15.92■□□□□ 0.14
TCOF1-209ENST00000506630 SIPA1L1O43166 1804 aa15.91■□□□□ 0.14
TCOF1-209ENST00000506630 DOCK1Q14185 1865 aa15.91■□□□□ 0.14
TCOF1-209ENST00000506630 BAG3O95817 575 aa15.91■□□□□ 0.14
TCOF1-209ENST00000506630 RHBDL3P58872 404 aa15.91■□□□□ 0.14
TCOF1-209ENST00000506630 TSHZ3Q63HK5 1081 aa15.91■□□□□ 0.14
TCOF1-209ENST00000506630 ADGRA1Q86SQ6 560 aa15.91■□□□□ 0.14
TCOF1-209ENST00000506630 TEX11Q8IYF3 940 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms