RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 RIMBP3BA6NNM3 1639 aa12.22□□□□□ -0.45
LIMCH1-205ENST00000503057 RIMBP3Q9UFD9 1639 aa12.22□□□□□ -0.45
LIMCH1-205ENST00000503057 TUBB4BP68371 445 aa12.22□□□□□ -0.45
LIMCH1-205ENST00000503057 WWC2Q6AWC2 1192 aa12.22□□□□□ -0.45
LIMCH1-205ENST00000503057 C8orf37Q96NL8 207 aa12.22□□□□□ -0.45
LIMCH1-205ENST00000503057 MAST3O60307 1309 aa12.22□□□□□ -0.45
LIMCH1-205ENST00000503057 CD163L1Q9NR16 1453 aa12.22□□□□□ -0.45
LIMCH1-205ENST00000503057 SPDYE4A6NLX3 237 aa12.22□□□□□ -0.45
LIMCH1-205ENST00000503057 ASIC1P78348 528 aa12.22□□□□□ -0.45
LIMCH1-205ENST00000503057 CEP112Q8N8E3 955 aa12.22□□□□□ -0.45
LIMCH1-205ENST00000503057 LMTK3Q96Q04 1460 aa12.21□□□□□ -0.45
LIMCH1-205ENST00000503057 VWA3AA6NCI4 1184 aa12.21□□□□□ -0.45
LIMCH1-205ENST00000503057 CKAP4Q07065 602 aaKnown RBP12.21□□□□□ -0.45
LIMCH1-205ENST00000503057 ZNF174Q15697 407 aa12.21□□□□□ -0.45
LIMCH1-205ENST00000503057 CNGA4Q8IV77 575 aa12.21□□□□□ -0.45
LIMCH1-205ENST00000503057 IFNL3Q8IZI9 196 aa12.21□□□□□ -0.45
LIMCH1-205ENST00000503057 ERMNQ8TAM6 284 aa12.21□□□□□ -0.45
LIMCH1-205ENST00000503057 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.21□□□□□ -0.45
LIMCH1-205ENST00000503057 BAG1Q99933 345 aaPredicted RBP12.21□□□□□ -0.45
LIMCH1-205ENST00000503057 MYL10Q9BUA6 226 aa12.21□□□□□ -0.45
LIMCH1-205ENST00000503057 GNPATO15228 680 aa12.21□□□□□ -0.45
LIMCH1-205ENST00000503057 PPARAQ07869 468 aa12.21□□□□□ -0.45
LIMCH1-205ENST00000503057 GIGYF2Q6Y7W6 1299 aaKnown RBP12.21□□□□□ -0.45
LIMCH1-205ENST00000503057 UBA5Q9GZZ9 404 aa12.21□□□□□ -0.45
LIMCH1-205ENST00000503057 MAP2P11137 1827 aaKnown RBP12.21□□□□□ -0.45
LIMCH1-205ENST00000503057 SYT10Q6XYQ8 523 aa12.21□□□□□ -0.45
LIMCH1-205ENST00000503057 PUS3Q9BZE2 481 aaKnown RBP12.21□□□□□ -0.45
LIMCH1-205ENST00000503057 DIP2BQ9P265 1576 aa12.21□□□□□ -0.46
LIMCH1-205ENST00000503057 M0R2C6 588 aa12.21□□□□□ -0.46
LIMCH1-205ENST00000503057 SF3B2Q13435 895 aaKnown RBP12.21□□□□□ -0.46
LIMCH1-205ENST00000503057 KIAA1468Q9P260 1216 aa12.21□□□□□ -0.46
LIMCH1-205ENST00000503057 V9GY48 417 aaPredicted RBP12.21□□□□□ -0.46
LIMCH1-205ENST00000503057 POLR2DO15514 142 aaKnown RBP12.21□□□□□ -0.46
LIMCH1-205ENST00000503057 LARGE1O95461 756 aa12.21□□□□□ -0.46
LIMCH1-205ENST00000503057 TRAF1Q13077 416 aa12.21□□□□□ -0.46
LIMCH1-205ENST00000503057 NSUN7Q8NE18 718 aaKnown RBP12.21□□□□□ -0.46
LIMCH1-205ENST00000503057 KAT6BQ8WYB5 2073 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 CTAGE9A4FU28 777 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 AKR1B15C9JRZ8 316 aaPredicted RBP12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 H7C1W4 665 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 PDE8BO95263 885 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 IGKV5-2P06315 115 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 PARP1P09874 1014 aaKnown RBP12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 PPP1R2P41236 205 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 STX17P56962 302 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 STXBP4Q6ZWJ1 553 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 FERMT2Q96AC1 680 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 GREM2Q9H772 168 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 CARMIL3Q8ND23 1372 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 ERICH4A6NGS2 130 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 PLCD1P51178 756 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 KRT83P78385 493 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 POSTNQ15063 836 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 RBM17Q96I25 401 aaKnown RBP12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 A0A1W2PQ27 194 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 A0A1W2PQ64 194 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 A0A1W2PQD8 194 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 CTAGE15A4D2H0 777 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 CTAGE8P0CG41 777 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 PFKFB1P16118 471 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 CMA1P23946 247 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 ADORA1P30542 326 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 TTC38Q5R3I4 469 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 CTAGE6Q86UF2 777 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 CTAGE4Q8IX94 777 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 WDR66Q8TBY9 1149 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 ERO1AQ96HE7 468 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 RTEL1Q9NZ71 1219 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 MRVI1Q9Y6F6 885 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 USP42Q9H9J4 1324 aaKnown RBP12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 UBXN1Q04323 297 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 TRIM14Q14142 442 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 GOLGA1Q92805 767 aa12.2□□□□□ -0.46
LIMCH1-205ENST00000503057 H0YHG0 523 aa12.19□□□□□ -0.46
LIMCH1-205ENST00000503057 PICALMQ13492 652 aa12.19□□□□□ -0.46
LIMCH1-205ENST00000503057 TRAPPC3LQ5T215 181 aa12.19□□□□□ -0.46
LIMCH1-205ENST00000503057 RIOK3O14730 519 aaKnown RBP12.19□□□□□ -0.46
LIMCH1-205ENST00000503057 TMEM132AQ24JP5 1023 aa12.19□□□□□ -0.46
LIMCH1-205ENST00000503057 IL6STP40189 918 aaPredicted RBP12.19□□□□□ -0.46
LIMCH1-205ENST00000503057 PIK3AP1Q6ZUJ8 805 aa12.19□□□□□ -0.46
LIMCH1-205ENST00000503057 PKNOX2Q96KN3 472 aa12.19□□□□□ -0.46
LIMCH1-205ENST00000503057 NAA15Q9BXJ9 866 aaKnown RBP12.19□□□□□ -0.46
LIMCH1-205ENST00000503057 PCDHA7Q9UN72 937 aa12.19□□□□□ -0.46
LIMCH1-205ENST00000503057 NSFL1CQ9UNZ2 370 aaKnown RBP12.19□□□□□ -0.46
LIMCH1-205ENST00000503057 SYNRGQ9UMZ2 1314 aa12.19□□□□□ -0.46
LIMCH1-205ENST00000503057 SKIDA1Q1XH10 827 aa12.19□□□□□ -0.46
LIMCH1-205ENST00000503057 KRT79Q5XKE5 535 aa12.19□□□□□ -0.46
LIMCH1-205ENST00000503057 NOSTRINQ8IVI9 506 aa12.19□□□□□ -0.46
LIMCH1-205ENST00000503057 C17orf53Q8N3J3 647 aaPredicted RBP12.19□□□□□ -0.46
LIMCH1-205ENST00000503057 CNBD1Q8NA66 436 aa12.19□□□□□ -0.46
LIMCH1-205ENST00000503057 MRFAP1L1Q96HT8 127 aa12.19□□□□□ -0.46
LIMCH1-205ENST00000503057 TTC14Q96N46 770 aa12.19□□□□□ -0.46
LIMCH1-205ENST00000503057 ARFGAP3Q9NP61 516 aa12.19□□□□□ -0.46
LIMCH1-205ENST00000503057 CDC25BP30305 580 aa12.18□□□□□ -0.46
LIMCH1-205ENST00000503057 ZNF654Q8IZM8 581 aa12.18□□□□□ -0.46
LIMCH1-205ENST00000503057 FEZ1Q99689 392 aa12.18□□□□□ -0.46
LIMCH1-205ENST00000503057 NAP1L4Q99733 375 aaKnown RBP12.18□□□□□ -0.46
LIMCH1-205ENST00000503057 JADE2Q9NQC1 790 aa12.18□□□□□ -0.46
LIMCH1-205ENST00000503057 ARPP21Q9UBL0 812 aaPredicted RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms