RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 TYRO3Q06418 890 aa24.59■■□□□ 1.53
CCDC88B-208ENST00000492980 CCAR1Q8IX12 1150 aaKnown RBP24.59■■□□□ 1.53
CCDC88B-208ENST00000492980 CKAP2LQ8IYA6 745 aa24.59■■□□□ 1.53
CCDC88B-208ENST00000492980 ZKSCAN3Q9BRR0 538 aa24.59■■□□□ 1.53
CCDC88B-208ENST00000492980 BRIP1Q9BX63 1249 aa24.59■■□□□ 1.53
CCDC88B-208ENST00000492980 MECOMQ03112 1051 aa24.58■■□□□ 1.53
CCDC88B-208ENST00000492980 SART3Q15020 963 aaKnown RBP24.58■■□□□ 1.53
CCDC88B-208ENST00000492980 TXNRD3Q86VQ6 643 aa24.58■■□□□ 1.53
CCDC88B-208ENST00000492980 DUOX1Q9NRD9 1551 aa24.58■■□□□ 1.53
CCDC88B-208ENST00000492980 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.58■■□□□ 1.52
CCDC88B-208ENST00000492980 ZBTB22O15209 634 aa24.58■■□□□ 1.52
CCDC88B-208ENST00000492980 POLR3DP05423 398 aaPredicted RBP24.58■■□□□ 1.52
CCDC88B-208ENST00000492980 GRAPQ13588 217 aa24.58■■□□□ 1.52
CCDC88B-208ENST00000492980 WTAPQ15007 396 aa24.58■■□□□ 1.52
CCDC88B-208ENST00000492980 MYSM1Q5VVJ2 828 aa24.58■■□□□ 1.52
CCDC88B-208ENST00000492980 GRAPLQ8TC17 118 aaPredicted RBP24.58■■□□□ 1.52
CCDC88B-208ENST00000492980 GOLPH3LQ9H4A5 285 aa24.58■■□□□ 1.52
CCDC88B-208ENST00000492980 USP25Q9UHP3 1055 aa24.58■■□□□ 1.52
CCDC88B-208ENST00000492980 MRVI1Q9Y6F6 885 aa24.58■■□□□ 1.52
CCDC88B-208ENST00000492980 IARSP41252 1262 aaKnown RBP24.57■■□□□ 1.52
CCDC88B-208ENST00000492980 CCDC88AQ3V6T2 1871 aa24.57■■□□□ 1.52
CCDC88B-208ENST00000492980 STK36Q9NRP7 1315 aa24.57■■□□□ 1.52
CCDC88B-208ENST00000492980 SMIM22K7EJ46 135 aa24.56■■□□□ 1.52
CCDC88B-208ENST00000492980 CHAF1AQ13111 956 aaPredicted RBP24.56■■□□□ 1.52
CCDC88B-208ENST00000492980 SYNE3Q6ZMZ3 975 aa24.56■■□□□ 1.52
CCDC88B-208ENST00000492980 POLR3EQ9NVU0 708 aa24.56■■□□□ 1.52
CCDC88B-208ENST00000492980 ME1P48163 572 aa24.56■■□□□ 1.52
CCDC88B-208ENST00000492980 SLC51AQ86UW1 340 aa24.56■■□□□ 1.52
CCDC88B-208ENST00000492980 LINC00301Q8NCQ3 95 aa24.56■■□□□ 1.52
CCDC88B-208ENST00000492980 CLIC4Q9Y696 253 aa24.56■■□□□ 1.52
CCDC88B-208ENST00000492980 ERICH2A1L162 156 aa24.55■■□□□ 1.52
CCDC88B-208ENST00000492980 KRT40Q6A162 431 aa24.55■■□□□ 1.52
CCDC88B-208ENST00000492980 PRR5LQ6MZQ0 368 aa24.55■■□□□ 1.52
CCDC88B-208ENST00000492980 KIAA1551Q9HCM1 1747 aa24.55■■□□□ 1.52
CCDC88B-208ENST00000492980 YEATS4O95619 227 aa24.55■■□□□ 1.52
CCDC88B-208ENST00000492980 TMTC2Q8N394 836 aa24.55■■□□□ 1.52
CCDC88B-208ENST00000492980 ESR2Q92731 530 aa24.55■■□□□ 1.52
CCDC88B-208ENST00000492980 QTRT2Q9H974 415 aaKnown RBP24.55■■□□□ 1.52
CCDC88B-208ENST00000492980 CCDC39Q9UFE4 941 aa24.55■■□□□ 1.52
CCDC88B-208ENST00000492980 PCDHA7Q9UN72 937 aa24.55■■□□□ 1.52
CCDC88B-208ENST00000492980 FMNL1O95466 1100 aaPredicted RBP24.54■■□□□ 1.52
CCDC88B-208ENST00000492980 IFNAR1P17181 557 aa24.54■■□□□ 1.52
CCDC88B-208ENST00000492980 PRDX5P30044 214 aa24.54■■□□□ 1.52
CCDC88B-208ENST00000492980 SNW1Q13573 536 aaKnown RBP24.54■■□□□ 1.52
CCDC88B-208ENST00000492980 CCDC73Q6ZRK6 1079 aa24.54■■□□□ 1.52
CCDC88B-208ENST00000492980 ENGASEQ8NFI3 743 aa24.54■■□□□ 1.52
CCDC88B-208ENST00000492980 NOL7Q9UMY1 257 aaKnown RBP24.54■■□□□ 1.52
CCDC88B-208ENST00000492980 BRWD3Q6RI45 1802 aa24.54■■□□□ 1.52
CCDC88B-208ENST00000492980 LAMB1P07942 1786 aa24.54■■□□□ 1.52
CCDC88B-208ENST00000492980 CYP2D7A0A087X1C5 515 aa24.53■■□□□ 1.52
CCDC88B-208ENST00000492980 GYS1P13807 737 aa24.53■■□□□ 1.52
CCDC88B-208ENST00000492980 SSRP1Q08945 709 aaKnown RBP24.53■■□□□ 1.52
CCDC88B-208ENST00000492980 FAM200AQ8TCP9 573 aa24.53■■□□□ 1.52
CCDC88B-208ENST00000492980 UBAC1Q9BSL1 405 aa24.53■■□□□ 1.52
CCDC88B-208ENST00000492980 SLC26A6Q9BXS9 759 aa24.53■■□□□ 1.52
CCDC88B-208ENST00000492980 LEMD3Q9Y2U8 911 aa24.53■■□□□ 1.52
CCDC88B-208ENST00000492980 RCAN1P53805 252 aa24.53■■□□□ 1.52
CCDC88B-208ENST00000492980 STK38Q15208 465 aa24.53■■□□□ 1.52
CCDC88B-208ENST00000492980 SEC23AQ15436 765 aa24.53■■□□□ 1.52
CCDC88B-208ENST00000492980 RTN1Q16799 776 aa24.53■■□□□ 1.52
CCDC88B-208ENST00000492980 KCNG4Q8TDN1 519 aa24.53■■□□□ 1.52
CCDC88B-208ENST00000492980 ANKIB1Q9P2G1 1089 aa24.53■■□□□ 1.52
CCDC88B-208ENST00000492980 MYH2Q9UKX2 1941 aa24.53■■□□□ 1.52
CCDC88B-208ENST00000492980 ADCY5O95622 1261 aa24.52■■□□□ 1.52
CCDC88B-208ENST00000492980 FAM160A1Q05DH4 1040 aa24.52■■□□□ 1.52
CCDC88B-208ENST00000492980 ADALQ6DHV7 355 aa24.52■■□□□ 1.52
CCDC88B-208ENST00000492980 CTR9Q6PD62 1173 aa24.52■■□□□ 1.52
CCDC88B-208ENST00000492980 TMED8Q6PL24 325 aaPredicted RBP24.52■■□□□ 1.52
CCDC88B-208ENST00000492980 FSIP1Q8NA03 581 aa24.52■■□□□ 1.52
CCDC88B-208ENST00000492980 A0A1W2PQ27 194 aa24.52■■□□□ 1.52
CCDC88B-208ENST00000492980 A0A1W2PQ64 194 aa24.52■■□□□ 1.52
CCDC88B-208ENST00000492980 A0A1W2PQD8 194 aa24.52■■□□□ 1.52
CCDC88B-208ENST00000492980 FGRP09769 529 aa24.52■■□□□ 1.52
CCDC88B-208ENST00000492980 SLC27A3Q5K4L6 730 aa24.52■■□□□ 1.52
CCDC88B-208ENST00000492980 ZNF654Q8IZM8 581 aa24.52■■□□□ 1.52
CCDC88B-208ENST00000492980 AATFQ9NY61 560 aaKnown RBP eCLIP24.52■■□□□ 1.52
CCDC88B-208ENST00000492980 EIF2AK3Q9NZJ5 1116 aaKnown RBP24.52■■□□□ 1.52
CCDC88B-208ENST00000492980 TNKSO95271 1327 aa24.51■■□□□ 1.51
CCDC88B-208ENST00000492980 DLEC1Q9Y238 1755 aa24.51■■□□□ 1.51
CCDC88B-208ENST00000492980 UBE2Q2LH0YL09 131 aa24.51■■□□□ 1.51
CCDC88B-208ENST00000492980 ANO6Q4KMQ2 910 aa24.51■■□□□ 1.51
CCDC88B-208ENST00000492980 JAG2Q9Y219 1238 aa24.51■■□□□ 1.51
CCDC88B-208ENST00000492980 XDHP47989 1333 aa24.51■■□□□ 1.51
CCDC88B-208ENST00000492980 CTAGE5O15320 804 aa24.5■■□□□ 1.51
CCDC88B-208ENST00000492980 MSNP26038 577 aaKnown RBP24.5■■□□□ 1.51
CCDC88B-208ENST00000492980 ANO1Q5XXA6 986 aa24.5■■□□□ 1.51
CCDC88B-208ENST00000492980 SASS6Q6UVJ0 657 aa24.5■■□□□ 1.51
CCDC88B-208ENST00000492980 MRPS27Q92552 414 aaKnown RBP24.5■■□□□ 1.51
CCDC88B-208ENST00000492980 CRNKL1Q9BZJ0 848 aaKnown RBP24.5■■□□□ 1.51
CCDC88B-208ENST00000492980 SPTLC2O15270 562 aa24.5■■□□□ 1.51
CCDC88B-208ENST00000492980 PCP11498 1178 aaKnown RBP24.5■■□□□ 1.51
CCDC88B-208ENST00000492980 TRIM29Q14134 588 aa24.5■■□□□ 1.51
CCDC88B-208ENST00000492980 SF3A1Q15459 793 aaKnown RBP24.5■■□□□ 1.51
CCDC88B-208ENST00000492980 NBPF11Q86T75 865 aa24.5■■□□□ 1.51
CCDC88B-208ENST00000492980 USP17L12C9JPN9 530 aa24.49■■□□□ 1.51
CCDC88B-208ENST00000492980 USP17L21D6R901 530 aa24.49■■□□□ 1.51
CCDC88B-208ENST00000492980 CRY2Q49AN0 593 aa24.49■■□□□ 1.51
CCDC88B-208ENST00000492980 SPTY2D1Q68D10 685 aaPredicted RBP24.49■■□□□ 1.51
CCDC88B-208ENST00000492980 WASF1Q92558 559 aa24.49■■□□□ 1.51
CCDC88B-208ENST00000492980 RPGRQ92834 1020 aaKnown RBP24.49■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms