RNA–Protein interactions for RNA: ENST00000492606.1

UBR4-215, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-215ENST00000492606 CTHP32929 405 aa5.85□□□□□ -1.47
UBR4-215ENST00000492606 SMAD3P84022 425 aaKnown RBP5.85□□□□□ -1.47
UBR4-215ENST00000492606 SHHQ15465 462 aa5.85□□□□□ -1.47
UBR4-215ENST00000492606 C9orf50Q5SZB4 431 aa5.85□□□□□ -1.47
UBR4-215ENST00000492606 SPRYD7Q5W111 196 aa5.85□□□□□ -1.47
UBR4-215ENST00000492606 TBC1D9BQ66K14 1250 aa5.85□□□□□ -1.47
UBR4-215ENST00000492606 NIM1KQ8IY84 436 aa5.85□□□□□ -1.47
UBR4-215ENST00000492606 KCTD17Q8N5Z5 321 aa5.85□□□□□ -1.47
UBR4-215ENST00000492606 NFATC2IPQ8NCF5 419 aa5.85□□□□□ -1.47
UBR4-215ENST00000492606 ZMIZ1Q9ULJ6 1067 aa5.85□□□□□ -1.47
UBR4-215ENST00000492606 USTQ9Y2C2 406 aa5.85□□□□□ -1.47
UBR4-215ENST00000492606 LAMB1P07942 1786 aa5.85□□□□□ -1.47
UBR4-215ENST00000492606 CDHR2Q9BYE9 1310 aa5.84□□□□□ -1.47
UBR4-215ENST00000492606 H7C1D1 291 aa5.84□□□□□ -1.47
UBR4-215ENST00000492606 TFRCP02786 760 aaKnown RBP5.84□□□□□ -1.47
UBR4-215ENST00000492606 PTPN12Q05209 780 aaKnown RBP5.84□□□□□ -1.47
UBR4-215ENST00000492606 ADGRE1Q14246 886 aa5.84□□□□□ -1.47
UBR4-215ENST00000492606 C4orf48Q5BLP8 95 aa5.84□□□□□ -1.47
UBR4-215ENST00000492606 TRAF7Q6Q0C0 670 aa5.84□□□□□ -1.47
UBR4-215ENST00000492606 NYAP1Q6ZVC0 841 aa5.84□□□□□ -1.47
UBR4-215ENST00000492606 ASCL5Q7RTU5 278 aa5.84□□□□□ -1.47
UBR4-215ENST00000492606 NECAB2Q7Z6G3 386 aa5.84□□□□□ -1.47
UBR4-215ENST00000492606 AEBP1Q8IUX7 1158 aa5.84□□□□□ -1.47
UBR4-215ENST00000492606 PLEKHM2Q8IWE5 1019 aa5.84□□□□□ -1.47
UBR4-215ENST00000492606 RAPGEF4Q8WZA2 1011 aa5.84□□□□□ -1.47
UBR4-215ENST00000492606 GPKOWQ92917 476 aaPredicted RBP eCLIP5.84□□□□□ -1.47
UBR4-215ENST00000492606 VPS13AQ96RL7 3174 aa5.84□□□□□ -1.47
UBR4-215ENST00000492606 MYO18BQ8IUG5 2567 aa5.83□□□□□ -1.48
UBR4-215ENST00000492606 RAD17O75943 681 aa5.83□□□□□ -1.48
UBR4-215ENST00000492606 GRK4P32298 578 aa5.83□□□□□ -1.48
UBR4-215ENST00000492606 PTPN5P54829 565 aa5.83□□□□□ -1.48
UBR4-215ENST00000492606 TCF15Q12870 199 aa5.83□□□□□ -1.48
UBR4-215ENST00000492606 FAM50AQ14320 339 aaKnown RBP5.83□□□□□ -1.48
UBR4-215ENST00000492606 PRAMEF18Q5VWM3 479 aa5.83□□□□□ -1.48
UBR4-215ENST00000492606 DGLUCYQ7Z3D6 616 aa5.83□□□□□ -1.48
UBR4-215ENST00000492606 PNMA1Q8ND90 353 aa5.83□□□□□ -1.48
UBR4-215ENST00000492606 ADAM32Q8TC27 787 aa5.83□□□□□ -1.48
UBR4-215ENST00000492606 PTPN18Q99952 460 aa5.83□□□□□ -1.48
UBR4-215ENST00000492606 GGA3Q9NZ52 723 aa5.83□□□□□ -1.48
UBR4-215ENST00000492606 SCAF8Q9UPN6 1271 aaKnown RBP5.83□□□□□ -1.48
UBR4-215ENST00000492606 CEP250Q9BV73 2442 aa5.83□□□□□ -1.48
UBR4-215ENST00000492606 ZZEF1O43149 2961 aa5.82□□□□□ -1.48
UBR4-215ENST00000492606 USP17L3A6NCW0 530 aa5.82□□□□□ -1.48
UBR4-215ENST00000492606 USP17L4A6NCW7 530 aa5.82□□□□□ -1.48
UBR4-215ENST00000492606 MANSC4A6NHS7 340 aaPredicted RBP5.82□□□□□ -1.48
UBR4-215ENST00000492606 SOBPA7XYQ1 873 aa5.82□□□□□ -1.48
UBR4-215ENST00000492606 DKK1O94907 266 aa5.82□□□□□ -1.48
UBR4-215ENST00000492606 NPR1P16066 1061 aa5.82□□□□□ -1.48
UBR4-215ENST00000492606 INHBEP58166 350 aa5.82□□□□□ -1.48
UBR4-215ENST00000492606 PTK2Q05397 1052 aa5.82□□□□□ -1.48
UBR4-215ENST00000492606 ELOAQ14241 798 aaKnown RBP5.82□□□□□ -1.48
UBR4-215ENST00000492606 ARHGEF6Q15052 776 aa5.82□□□□□ -1.48
UBR4-215ENST00000492606 AOC3Q16853 763 aa5.82□□□□□ -1.48
UBR4-215ENST00000492606 USP17L2Q6R6M4 530 aa5.82□□□□□ -1.48
UBR4-215ENST00000492606 USP17L1Q7RTZ2 530 aa5.82□□□□□ -1.48
UBR4-215ENST00000492606 ARMC2Q8NEN0 867 aa5.82□□□□□ -1.48
UBR4-215ENST00000492606 RMDN1Q96DB5 314 aa5.82□□□□□ -1.48
UBR4-215ENST00000492606 DEFB118Q96PH6 123 aa5.82□□□□□ -1.48
UBR4-215ENST00000492606 ZNRF3Q9ULT6 936 aa5.82□□□□□ -1.48
UBR4-215ENST00000492606 COL1A1P02452 1464 aaPredicted RBP5.82□□□□□ -1.48
UBR4-215ENST00000492606 SPEGQ15772 3267 aa5.82□□□□□ -1.48
UBR4-215ENST00000492606 CHD7Q9P2D1 2997 aa5.82□□□□□ -1.48
UBR4-215ENST00000492606 SCN7AQ01118 1682 aa5.82□□□□□ -1.48
UBR4-215ENST00000492606 ROCK1Q13464 1354 aa5.81□□□□□ -1.48
UBR4-215ENST00000492606 TONSLQ96HA7 1378 aa5.81□□□□□ -1.48
UBR4-215ENST00000492606 FRYQ5TBA9 3013 aa5.81□□□□□ -1.48
UBR4-215ENST00000492606 PRAMEF22A3QJZ6 481 aa5.81□□□□□ -1.48
UBR4-215ENST00000492606 USP17L5A8MUK1 530 aa5.81□□□□□ -1.48
UBR4-215ENST00000492606 PPIP5K2O43314 1243 aa5.81□□□□□ -1.48
UBR4-215ENST00000492606 BRD1O95696 1058 aa5.81□□□□□ -1.48
UBR4-215ENST00000492606 S1PR4O95977 384 aa5.81□□□□□ -1.48
UBR4-215ENST00000492606 SKIP12755 728 aa5.81□□□□□ -1.48
UBR4-215ENST00000492606 CTGFP29279 349 aa5.81□□□□□ -1.48
UBR4-215ENST00000492606 PRKG1Q13976 671 aa5.81□□□□□ -1.48
UBR4-215ENST00000492606 PHLDB3Q6NSJ2 640 aa5.81□□□□□ -1.48
UBR4-215ENST00000492606 HFE2Q6ZVN8 426 aa5.81□□□□□ -1.48
UBR4-215ENST00000492606 CDAN1Q8IWY9 1227 aa5.81□□□□□ -1.48
UBR4-215ENST00000492606 DEPDC4Q8N2C3 294 aa5.81□□□□□ -1.48
UBR4-215ENST00000492606 ZBTB38Q8NAP3 1195 aaPredicted RBP5.81□□□□□ -1.48
UBR4-215ENST00000492606 BAP1Q92560 729 aa5.81□□□□□ -1.48
UBR4-215ENST00000492606 HNRNPABQ99729 332 aaKnown RBP5.81□□□□□ -1.48
UBR4-215ENST00000492606 SLC6A16Q9GZN6 736 aa5.81□□□□□ -1.48
UBR4-215ENST00000492606 PRDM12Q9H4Q4 367 aa5.81□□□□□ -1.48
UBR4-215ENST00000492606 VRTNQ9H8Y1 702 aa5.81□□□□□ -1.48
UBR4-215ENST00000492606 IL21Q9HBE4 155 aa5.81□□□□□ -1.48
UBR4-215ENST00000492606 RIPOR2Q9Y4F9 1068 aa5.81□□□□□ -1.48
UBR4-215ENST00000492606 DDX60LQ5H9U9 1706 aaKnown RBP5.81□□□□□ -1.48
UBR4-215ENST00000492606 DOPEY1Q5JWR5 2465 aa5.81□□□□□ -1.48
UBR4-215ENST00000492606 KLRG2A4D1S0 409 aaPredicted RBP5.8□□□□□ -1.48
UBR4-215ENST00000492606 PTCD1O75127 700 aaKnown RBP5.8□□□□□ -1.48
UBR4-215ENST00000492606 PTK7Q13308 1070 aa5.8□□□□□ -1.48
UBR4-215ENST00000492606 CRTC2Q53ET0 693 aaPredicted RBP5.8□□□□□ -1.48
UBR4-215ENST00000492606 TMEM164Q5U3C3 297 aa5.8□□□□□ -1.48
UBR4-215ENST00000492606 NME9Q86XW9 330 aa5.8□□□□□ -1.48
UBR4-215ENST00000492606 CNBD1Q8NA66 436 aa5.8□□□□□ -1.48
UBR4-215ENST00000492606 STK32AQ8WU08 396 aa5.8□□□□□ -1.48
UBR4-215ENST00000492606 FOXJ1Q92949 421 aa5.8□□□□□ -1.48
UBR4-215ENST00000492606 CCDC85AQ96PX6 553 aaPredicted RBP5.8□□□□□ -1.48
UBR4-215ENST00000492606 GAS2L1Q99501 681 aaPredicted RBP5.8□□□□□ -1.48
UBR4-215ENST00000492606 ZNF576Q9H609 170 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms