RNA–Protein interactions for RNA: ENST00000490808.1

HDAC3-210, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 605 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-210ENST00000490808 MCM4P33991 863 aa12.11□□□□□ -0.47
HDAC3-210ENST00000490808 GMPSP49915 693 aaPredicted RBP12.11□□□□□ -0.47
HDAC3-210ENST00000490808 SCNN1DP51172 638 aa12.11□□□□□ -0.47
HDAC3-210ENST00000490808 ZNF280AP59817 542 aaPredicted RBP12.11□□□□□ -0.47
HDAC3-210ENST00000490808 GSTO1P78417 241 aa12.11□□□□□ -0.47
HDAC3-210ENST00000490808 CLEC17AQ6ZS10 378 aa12.11□□□□□ -0.47
HDAC3-210ENST00000490808 GPR101Q96P66 508 aaPredicted RBP12.11□□□□□ -0.47
HDAC3-210ENST00000490808 GMLQ99445 158 aa12.11□□□□□ -0.47
HDAC3-210ENST00000490808 NOL10Q9BSC4 688 aaKnown RBP12.11□□□□□ -0.47
HDAC3-210ENST00000490808 NAPBQ9H115 298 aa12.11□□□□□ -0.47
HDAC3-210ENST00000490808 CNNM2Q9H8M5 875 aa12.11□□□□□ -0.47
HDAC3-210ENST00000490808 ATP6V1DQ9Y5K8 247 aa12.11□□□□□ -0.47
HDAC3-210ENST00000490808 ECM29Q5VYK3 1845 aa12.11□□□□□ -0.47
HDAC3-210ENST00000490808 WDR33Q9C0J8 1336 aaKnown RBP12.11□□□□□ -0.47
HDAC3-210ENST00000490808 CNTNAP1P78357 1384 aa12.1□□□□□ -0.47
HDAC3-210ENST00000490808 MAGEB6P1A0A0J9YX57 407 aa12.1□□□□□ -0.47
HDAC3-210ENST00000490808 TCRBV5S4A2TA0A5A2 114 aa12.1□□□□□ -0.47
HDAC3-210ENST00000490808 E7EWF7 191 aa12.1□□□□□ -0.47
HDAC3-210ENST00000490808 SNAP23O00161 211 aa12.1□□□□□ -0.47
HDAC3-210ENST00000490808 LDHCP07864 332 aa12.1□□□□□ -0.47
HDAC3-210ENST00000490808 CYP7A1P22680 504 aa12.1□□□□□ -0.47
HDAC3-210ENST00000490808 KLRK1P26718 216 aa12.1□□□□□ -0.47
HDAC3-210ENST00000490808 MCM5P33992 734 aa12.1□□□□□ -0.47
HDAC3-210ENST00000490808 EPHX2P34913 555 aa12.1□□□□□ -0.47
HDAC3-210ENST00000490808 LBX1P52954 281 aa12.1□□□□□ -0.47
HDAC3-210ENST00000490808 GTF2IP78347 998 aa12.1□□□□□ -0.47
HDAC3-210ENST00000490808 NAA16Q6N069 864 aaPredicted RBP12.1□□□□□ -0.47
HDAC3-210ENST00000490808 LDHDQ86WU2 507 aa12.1□□□□□ -0.47
HDAC3-210ENST00000490808 SLF2Q8IX21 1173 aa12.1□□□□□ -0.47
HDAC3-210ENST00000490808 STRBPQ96SI9 672 aaKnown RBP12.1□□□□□ -0.47
HDAC3-210ENST00000490808 TAF1DQ9H5J8 278 aaPredicted RBP12.1□□□□□ -0.47
HDAC3-210ENST00000490808 CNOT7Q9UIV1 285 aaKnown RBP12.1□□□□□ -0.47
HDAC3-210ENST00000490808 MYO5AQ9Y4I1 1855 aaKnown RBP12.1□□□□□ -0.47
HDAC3-210ENST00000490808 MFSD14BQ5SR56 506 aa12.09□□□□□ -0.47
HDAC3-210ENST00000490808 GIMAP6Q6P9H5 292 aa12.09□□□□□ -0.47
HDAC3-210ENST00000490808 Q6ZUG5 572 aa12.09□□□□□ -0.47
HDAC3-210ENST00000490808 FBXL16Q8N461 479 aa12.09□□□□□ -0.47
HDAC3-210ENST00000490808 MTMR14Q8NCE2 650 aa12.09□□□□□ -0.47
HDAC3-210ENST00000490808 TNPO1Q92973 898 aaKnown RBP12.09□□□□□ -0.47
HDAC3-210ENST00000490808 ABHD8Q96I13 439 aa12.09□□□□□ -0.47
HDAC3-210ENST00000490808 KRT23Q9C075 422 aa12.09□□□□□ -0.47
HDAC3-210ENST00000490808 RNF41Q9H4P4 317 aaPredicted RBP12.09□□□□□ -0.47
HDAC3-210ENST00000490808 POLR2AP24928 1970 aaKnown RBP12.09□□□□□ -0.47
HDAC3-210ENST00000490808 WTIPA6NIX2 430 aaPredicted RBP12.08□□□□□ -0.48
HDAC3-210ENST00000490808 DHX16O60231 1041 aaKnown RBP12.08□□□□□ -0.48
HDAC3-210ENST00000490808 MBD4O95243 580 aa12.08□□□□□ -0.48
HDAC3-210ENST00000490808 POTEIP0CG38 1075 aa12.08□□□□□ -0.48
HDAC3-210ENST00000490808 POTEJP0CG39 1038 aa12.08□□□□□ -0.48
HDAC3-210ENST00000490808 TDO2P48775 406 aa12.08□□□□□ -0.48
HDAC3-210ENST00000490808 NT5C2P49902 561 aa12.08□□□□□ -0.48
HDAC3-210ENST00000490808 MICALL2Q8IY33 904 aa12.08□□□□□ -0.48
HDAC3-210ENST00000490808 LLPHQ9BRT6 129 aaKnown RBP12.08□□□□□ -0.48
HDAC3-210ENST00000490808 PGAP2Q9UHJ9 254 aa12.08□□□□□ -0.48
HDAC3-210ENST00000490808 SERPINA10Q9UK55 444 aa12.08□□□□□ -0.48
HDAC3-210ENST00000490808 SLC4A4Q9Y6R1 1079 aa12.08□□□□□ -0.48
HDAC3-210ENST00000490808 LAMA4Q16363 1823 aa12.08□□□□□ -0.48
HDAC3-210ENST00000490808 PITPNM2Q9BZ72 1349 aa12.08□□□□□ -0.48
HDAC3-210ENST00000490808 ADAMTSL1Q8N6G6 1762 aa12.07□□□□□ -0.48
HDAC3-210ENST00000490808 MYO1BO43795 1136 aa12.07□□□□□ -0.48
HDAC3-210ENST00000490808 BAG3O95817 575 aa12.07□□□□□ -0.48
HDAC3-210ENST00000490808 LDHBP07195 334 aaKnown RBP12.07□□□□□ -0.48
HDAC3-210ENST00000490808 SLC3A2P08195 630 aaKnown RBP12.07□□□□□ -0.48
HDAC3-210ENST00000490808 PCP11498 1178 aaKnown RBP12.07□□□□□ -0.48
HDAC3-210ENST00000490808 CPA1P15085 419 aa12.07□□□□□ -0.48
HDAC3-210ENST00000490808 VEGFBP49765 207 aa12.07□□□□□ -0.48
HDAC3-210ENST00000490808 EXOSC10Q01780 885 aaKnown RBP12.07□□□□□ -0.48
HDAC3-210ENST00000490808 MLLT1Q03111 559 aaPredicted RBP12.07□□□□□ -0.48
HDAC3-210ENST00000490808 SART3Q15020 963 aaKnown RBP12.07□□□□□ -0.48
HDAC3-210ENST00000490808 CSPP1Q1MSJ5 1256 aa12.07□□□□□ -0.48
HDAC3-210ENST00000490808 DZIP1Q86YF9 867 aaKnown RBP12.07□□□□□ -0.48
HDAC3-210ENST00000490808 CCDC83Q8IWF9 413 aa12.07□□□□□ -0.48
HDAC3-210ENST00000490808 IFNL3Q8IZI9 196 aa12.07□□□□□ -0.48
HDAC3-210ENST00000490808 FBXW7Q969H0 707 aa12.07□□□□□ -0.48
HDAC3-210ENST00000490808 ZNF274Q96GC6 653 aaPredicted RBP12.07□□□□□ -0.48
HDAC3-210ENST00000490808 MTA3Q9BTC8 594 aa12.07□□□□□ -0.48
HDAC3-210ENST00000490808 CRNKL1Q9BZJ0 848 aaKnown RBP12.07□□□□□ -0.48
HDAC3-210ENST00000490808 WBP1LQ9NX94 342 aa12.07□□□□□ -0.48
HDAC3-210ENST00000490808 IQSEC3Q9UPP2 1182 aaPredicted RBP12.07□□□□□ -0.48
HDAC3-210ENST00000490808 MYH2Q9UKX2 1941 aa12.07□□□□□ -0.48
HDAC3-210ENST00000490808 MAST2Q6P0Q8 1798 aa12.06□□□□□ -0.48
HDAC3-210ENST00000490808 CHGBP05060 677 aa12.06□□□□□ -0.48
HDAC3-210ENST00000490808 EPS15P42566 896 aa12.06□□□□□ -0.48
HDAC3-210ENST00000490808 HMGN5P82970 282 aaKnown RBP12.06□□□□□ -0.48
HDAC3-210ENST00000490808 CHAF1AQ13111 956 aaPredicted RBP12.06□□□□□ -0.48
HDAC3-210ENST00000490808 TOB2Q14106 344 aaPredicted RBP12.06□□□□□ -0.48
HDAC3-210ENST00000490808 SLFNL1Q499Z3 407 aa12.06□□□□□ -0.48
HDAC3-210ENST00000490808 HHIPL2Q6UWX4 724 aa12.06□□□□□ -0.48
HDAC3-210ENST00000490808 MFSD6Q6ZSS7 791 aa12.06□□□□□ -0.48
HDAC3-210ENST00000490808 AMOTL1Q8IY63 956 aa12.06□□□□□ -0.48
HDAC3-210ENST00000490808 TMTC2Q8N394 836 aa12.06□□□□□ -0.48
HDAC3-210ENST00000490808 TMEM87BQ96K49 555 aa12.06□□□□□ -0.48
HDAC3-210ENST00000490808 AGXT2Q9BYV1 514 aa12.06□□□□□ -0.48
HDAC3-210ENST00000490808 ARMT1Q9H993 441 aa12.06□□□□□ -0.48
HDAC3-210ENST00000490808 MYOZ2Q9NPC6 264 aa12.06□□□□□ -0.48
HDAC3-210ENST00000490808 KCNQ5Q9NR82 932 aa12.06□□□□□ -0.48
HDAC3-210ENST00000490808 ERICH2A1L162 156 aa12.05□□□□□ -0.48
HDAC3-210ENST00000490808 CCDC85CA6NKD9 419 aa12.05□□□□□ -0.48
HDAC3-210ENST00000490808 TMEM88BA6NKF7 163 aa12.05□□□□□ -0.48
HDAC3-210ENST00000490808 BRD1O95696 1058 aa12.05□□□□□ -0.48
HDAC3-210ENST00000490808 NCLP19338 710 aaKnown RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms