RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 PCDHB15Q9Y5E8 787 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 KLHL33A6NCF5 533 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 FCHSD2O94868 740 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 DNM1Q05193 864 aaKnown RBP8.08□□□□□ -1.12
SYNE1-228ENST00000490135 RAB11FIP4Q86YS3 637 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 TCP11L2Q8N4U5 519 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 IL1RAPL2Q9NP60 686 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 KCNK9Q9NPC2 374 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 HELLSQ9NRZ9 838 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 SCOCQ9UIL1 159 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 LPXNO60711 386 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 PRPF40BQ6NWY9 871 aaKnown RBP8.08□□□□□ -1.12
SYNE1-228ENST00000490135 INTS8Q75QN2 995 aaKnown RBP8.08□□□□□ -1.12
SYNE1-228ENST00000490135 MTRF1LQ9UGC7 380 aaKnown RBP8.08□□□□□ -1.12
SYNE1-228ENST00000490135 ATP6V0A2Q9Y487 856 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 USP19O94966 1318 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 N4BP3O15049 544 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 RARSP54136 660 aaKnown RBP8.08□□□□□ -1.12
SYNE1-228ENST00000490135 APOBRQ0VD83 1088 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 PSMD6Q15008 389 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 TSPYL2Q9H2G4 693 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-228ENST00000490135 RHBDL2Q9NX52 303 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 PAPOLAP51003 745 aaKnown RBP8.08□□□□□ -1.12
SYNE1-228ENST00000490135 CCDC80Q76M96 950 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 RNF34Q969K3 372 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 MTRQ99707 1265 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 HAUS2Q9NVX0 235 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 TPCN1Q9ULQ1 816 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 FAF1Q9UNN5 650 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-228ENST00000490135 HIP1RO75146 1068 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 SLC8A3P57103 927 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 GRAMD4Q6IC98 578 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 KIFC2Q96AC6 838 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 PPANQ9NQ55 473 aaKnown RBP8.07□□□□□ -1.12
SYNE1-228ENST00000490135 TSPY2A6NKD2 308 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 PLA2G4AP47712 749 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 INPP1P49441 399 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 SULT6B1Q6IMI4 303 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 PPP1R21Q6ZMI0 780 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 MFN1Q8IWA4 741 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 C3orf20Q8ND61 904 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 CTAGE1Q96RT6 745 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 FAM167BQ9BTA0 163 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 DRC3Q9H069 523 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 KCNF1Q9H3M0 494 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 UNC45AQ9H3U1 944 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 TMOD3Q9NYL9 352 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 SMIM23A6NLE4 172 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 IFIT5Q13325 482 aaKnown RBP8.07□□□□□ -1.12
SYNE1-228ENST00000490135 FYB2Q5VWT5 728 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 CCDC170Q8IYT3 715 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 USP16Q9Y5T5 823 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 MYO1FO00160 1098 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 TRPC3Q13507 836 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 CYB5RLQ6IPT4 315 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 SRGAP1Q7Z6B7 1085 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 NAPGQ99747 312 aaPredicted RBP8.07□□□□□ -1.12
SYNE1-228ENST00000490135 LARSQ9P2J5 1176 aaKnown RBP8.07□□□□□ -1.12
SYNE1-228ENST00000490135 HDAC9Q9UKV0 1011 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 PPME1Q9Y570 386 aa8.07□□□□□ -1.12
SYNE1-228ENST00000490135 GLRX3O76003 335 aaKnown RBP8.06□□□□□ -1.12
SYNE1-228ENST00000490135 COG7P83436 770 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 ARHGAP18Q8N392 663 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 HVCN1Q96D96 273 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 RGL1Q9NZL6 768 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 FHOD1Q9Y613 1164 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 RAB11FIP3O75154 756 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 ATP5DP30049 168 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 ATP1A2P50993 1020 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 MIER3Q7Z3K6 550 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 DAAM1Q9Y4D1 1078 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.06□□□□□ -1.12
SYNE1-228ENST00000490135 GSTO1P78417 241 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 RRAGBQ5VZM2 374 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 TRIM11Q96F44 468 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 HOMER3Q9NSC5 361 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 NKIRAS1Q9NYS0 192 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 TSC22D4Q9Y3Q8 395 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 BIN1O00499 593 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 STK10O94804 968 aaKnown RBP8.06□□□□□ -1.12
SYNE1-228ENST00000490135 OATP04181 439 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 IARSP41252 1262 aaKnown RBP8.06□□□□□ -1.12
SYNE1-228ENST00000490135 CDR2Q01850 454 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 UAP1Q16222 522 aaPredicted RBP8.06□□□□□ -1.12
SYNE1-228ENST00000490135 TEX9Q8N6V9 391 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 FAM81AQ8TBF8 368 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 MMADHCQ9H3L0 296 aaPredicted RBP8.06□□□□□ -1.12
SYNE1-228ENST00000490135 LIMCH1Q9UPQ0 1083 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 ZNF711Q9Y462 761 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 PSDA5PKW4 1024 aaPredicted RBP8.06□□□□□ -1.12
SYNE1-228ENST00000490135 STXBP3O00186 592 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 CCNHP51946 323 aaPredicted RBP8.06□□□□□ -1.12
SYNE1-228ENST00000490135 Q4G0T1 1027 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 TXNDC2Q86VQ3 553 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 ANKRD24Q8TF21 1146 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 HAUS8Q9BT25 410 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 TFIP11Q9UBB9 837 aaKnown RBP8.06□□□□□ -1.12
SYNE1-228ENST00000490135 EXOC6BQ9Y2D4 811 aa8.06□□□□□ -1.12
SYNE1-228ENST00000490135 POLA1P09884 1462 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-228ENST00000490135 VCAM1P19320 739 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms