RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 WASHC2AQ641Q2 1341 aa8.81□□□□□ -1
PRPF40A-210ENST00000489741 SIN3BO75182 1162 aa8.81□□□□□ -1
PRPF40A-210ENST00000489741 EPB42P16452 691 aa8.81□□□□□ -1
PRPF40A-210ENST00000489741 ALAS2P22557 587 aa8.81□□□□□ -1
PRPF40A-210ENST00000489741 HMGB2P26583 209 aaKnown RBP8.81□□□□□ -1
PRPF40A-210ENST00000489741 IDH3AP50213 366 aa8.81□□□□□ -1
PRPF40A-210ENST00000489741 C11orf91Q3C1V1 193 aa8.81□□□□□ -1
PRPF40A-210ENST00000489741 BHMTQ93088 406 aa8.81□□□□□ -1
PRPF40A-210ENST00000489741 MKNK1Q9BUB5 465 aa8.81□□□□□ -1
PRPF40A-210ENST00000489741 POLKQ9UBT6 870 aa8.81□□□□□ -1
PRPF40A-210ENST00000489741 PCDH11XQ9BZA7 1347 aa8.8□□□□□ -1
PRPF40A-210ENST00000489741 PCDH11YQ9BZA8 1340 aa8.8□□□□□ -1
PRPF40A-210ENST00000489741 ELOA3CA0A087WX78 387 aaPredicted RBP8.8□□□□□ -1
PRPF40A-210ENST00000489741 ELOA3DA6NLF2 546 aaPredicted RBP8.8□□□□□ -1
PRPF40A-210ENST00000489741 ELOA3BQ3SY89 546 aa8.8□□□□□ -1
PRPF40A-210ENST00000489741 ERICH6Q7L0X2 663 aa8.8□□□□□ -1
PRPF40A-210ENST00000489741 NLGN2Q8NFZ4 835 aa8.8□□□□□ -1
PRPF40A-210ENST00000489741 ELOA3Q8NG57 546 aa8.8□□□□□ -1
PRPF40A-210ENST00000489741 PIGBQ92521 554 aa8.8□□□□□ -1
PRPF40A-210ENST00000489741 CLP1Q92989 425 aaKnown RBP8.8□□□□□ -1
PRPF40A-210ENST00000489741 PNMA5Q96PV4 448 aa8.8□□□□□ -1
PRPF40A-210ENST00000489741 CXXC1Q9P0U4 656 aaPredicted RBP8.8□□□□□ -1
PRPF40A-210ENST00000489741 DMGDHQ9UI17 866 aaKnown RBP8.8□□□□□ -1
PRPF40A-210ENST00000489741 SMG6Q86US8 1419 aaKnown RBP8.8□□□□□ -1
PRPF40A-210ENST00000489741 NSD3Q9BZ95 1437 aa8.8□□□□□ -1
PRPF40A-210ENST00000489741 CLSPNQ9HAW4 1339 aa8.8□□□□□ -1
PRPF40A-210ENST00000489741 GPR162Q16538 588 aa8.79□□□□□ -1
PRPF40A-210ENST00000489741 MPRIPQ6WCQ1 1025 aa8.79□□□□□ -1
PRPF40A-210ENST00000489741 AMIGO3Q86WK7 504 aa8.79□□□□□ -1
PRPF40A-210ENST00000489741 FLAD1Q8NFF5 587 aa8.79□□□□□ -1
PRPF40A-210ENST00000489741 IFT43Q96FT9 208 aa8.79□□□□□ -1
PRPF40A-210ENST00000489741 COL24A1Q17RW2 1714 aa8.79□□□□□ -1
PRPF40A-210ENST00000489741 PALLDQ8WX93 1383 aa8.78□□□□□ -1
PRPF40A-210ENST00000489741 SHANK3Q9BYB0 1731 aa8.78□□□□□ -1
PRPF40A-210ENST00000489741 KAT6BQ8WYB5 2073 aa8.78□□□□□ -1
PRPF40A-210ENST00000489741 PIK3R2O00459 728 aa8.78□□□□□ -1
PRPF40A-210ENST00000489741 MICAL2O94851 1124 aa8.78□□□□□ -1
PRPF40A-210ENST00000489741 DGKGP49619 791 aa8.78□□□□□ -1
PRPF40A-210ENST00000489741 ARSDP51689 593 aa8.78□□□□□ -1
PRPF40A-210ENST00000489741 TBC1D8BQ0IIM8 1120 aa8.78□□□□□ -1
PRPF40A-210ENST00000489741 COX20Q5RI15 118 aa8.78□□□□□ -1
PRPF40A-210ENST00000489741 KCTD17Q8N5Z5 321 aa8.78□□□□□ -1
PRPF40A-210ENST00000489741 SMARCC1Q92922 1105 aaPredicted RBP8.78□□□□□ -1
PRPF40A-210ENST00000489741 LRFN2Q9ULH4 789 aa8.78□□□□□ -1
PRPF40A-210ENST00000489741 ADARB2-AS1A8MUL3 147 aa8.77□□□□□ -1.01
PRPF40A-210ENST00000489741 GNB5O14775 395 aa8.77□□□□□ -1.01
PRPF40A-210ENST00000489741 PTCD1O75127 700 aaKnown RBP8.77□□□□□ -1.01
PRPF40A-210ENST00000489741 YBX3P16989 372 aaKnown RBP eCLIP8.77□□□□□ -1.01
PRPF40A-210ENST00000489741 ATP2B4P23634 1241 aa8.77□□□□□ -1.01
PRPF40A-210ENST00000489741 INPP5BP32019 993 aa8.77□□□□□ -1.01
PRPF40A-210ENST00000489741 ADH7P40394 386 aa8.77□□□□□ -1.01
PRPF40A-210ENST00000489741 C16orf46Q6P387 395 aa8.77□□□□□ -1.01
PRPF40A-210ENST00000489741 IGFLR1Q9H665 355 aa8.77□□□□□ -1.01
PRPF40A-210ENST00000489741 SPG7Q9UQ90 795 aa8.77□□□□□ -1.01
PRPF40A-210ENST00000489741 CD2APQ9Y5K6 639 aa8.77□□□□□ -1.01
PRPF40A-210ENST00000489741 CEP350Q5VT06 3117 aa8.77□□□□□ -1.01
PRPF40A-210ENST00000489741 LY75O60449 1722 aa8.77□□□□□ -1.01
PRPF40A-210ENST00000489741 QSER1Q2KHR3 1735 aa8.77□□□□□ -1.01
PRPF40A-210ENST00000489741 RGPD2P0DJD1 1756 aa8.76□□□□□ -1.01
PRPF40A-210ENST00000489741 LOC102724428A0A0B4J2F2 783 aa8.76□□□□□ -1.01
PRPF40A-210ENST00000489741 PPM1GO15355 546 aaPredicted RBP8.76□□□□□ -1.01
PRPF40A-210ENST00000489741 GRIN3BO60391 1043 aa8.76□□□□□ -1.01
PRPF40A-210ENST00000489741 PHKG2P15735 406 aa8.76□□□□□ -1.01
PRPF40A-210ENST00000489741 HOXB4P17483 251 aaPredicted RBP8.76□□□□□ -1.01
PRPF40A-210ENST00000489741 SIK1P57059 783 aa8.76□□□□□ -1.01
PRPF40A-210ENST00000489741 C1QTNF8P60827 252 aa8.76□□□□□ -1.01
PRPF40A-210ENST00000489741 CCINQ13939 588 aa8.76□□□□□ -1.01
PRPF40A-210ENST00000489741 EIF4A2Q14240 407 aaKnown RBP8.76□□□□□ -1.01
PRPF40A-210ENST00000489741 TNFRSF25Q93038 417 aa8.76□□□□□ -1.01
PRPF40A-210ENST00000489741 COL26A1Q96A83 441 aa8.76□□□□□ -1.01
PRPF40A-210ENST00000489741 UBE2OQ9C0C9 1292 aaKnown RBP8.76□□□□□ -1.01
PRPF40A-210ENST00000489741 SAP130Q9H0E3 1048 aa8.76□□□□□ -1.01
PRPF40A-210ENST00000489741 ASAP1Q9ULH1 1129 aa8.76□□□□□ -1.01
PRPF40A-210ENST00000489741 PLEKHG2Q9H7P9 1386 aa8.75□□□□□ -1.01
PRPF40A-210ENST00000489741 DOT1LQ8TEK3 1739 aa8.75□□□□□ -1.01
PRPF40A-210ENST00000489741 NFKB1P19838 968 aa8.75□□□□□ -1.01
PRPF40A-210ENST00000489741 NAA30Q147X3 362 aaPredicted RBP8.75□□□□□ -1.01
PRPF40A-210ENST00000489741 MSL1Q68DK7 614 aa8.75□□□□□ -1.01
PRPF40A-210ENST00000489741 LINC00114Q6XXX2 140 aa8.75□□□□□ -1.01
PRPF40A-210ENST00000489741 CAPN12Q6ZSI9 719 aa8.75□□□□□ -1.01
PRPF40A-210ENST00000489741 SMIM5Q71RC9 77 aa8.75□□□□□ -1.01
PRPF40A-210ENST00000489741 TREML1Q86YW5 311 aa8.75□□□□□ -1.01
PRPF40A-210ENST00000489741 IFNL2Q8IZJ0 200 aa8.75□□□□□ -1.01
PRPF40A-210ENST00000489741 LINC00116Q8NCU8 138 aa8.75□□□□□ -1.01
PRPF40A-210ENST00000489741 GSX2Q9BZM3 304 aa8.75□□□□□ -1.01
PRPF40A-210ENST00000489741 EFCC1Q9HA90 598 aa8.75□□□□□ -1.01
PRPF40A-210ENST00000489741 ATG3Q9NT62 314 aa8.75□□□□□ -1.01
PRPF40A-210ENST00000489741 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.75□□□□□ -1.01
PRPF40A-210ENST00000489741 SSFA2P28290 1259 aa8.74□□□□□ -1.01
PRPF40A-210ENST00000489741 ITPK1Q13572 414 aa8.74□□□□□ -1.01
PRPF40A-210ENST00000489741 DCAF5Q96JK2 942 aa8.74□□□□□ -1.01
PRPF40A-210ENST00000489741 MDFIQ99750 246 aa8.74□□□□□ -1.01
PRPF40A-210ENST00000489741 IGSF1Q8N6C5 1336 aa8.74□□□□□ -1.01
PRPF40A-210ENST00000489741 ERVV-2B6SEH9 535 aa8.73□□□□□ -1.01
PRPF40A-210ENST00000489741 HSPA5P11021 654 aaKnown RBP8.73□□□□□ -1.01
PRPF40A-210ENST00000489741 BRD2P25440 801 aaKnown RBP8.73□□□□□ -1.01
PRPF40A-210ENST00000489741 KRT25Q7Z3Z0 450 aa8.73□□□□□ -1.01
PRPF40A-210ENST00000489741 RGL4Q8IZJ4 473 aa8.73□□□□□ -1.01
PRPF40A-210ENST00000489741 PANK3Q9H999 370 aa8.73□□□□□ -1.01
PRPF40A-210ENST00000489741 TMOD3Q9NYL9 352 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 295.5 ms