RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 SDR42E1Q8WUS8 393 aa14.31□□□□□ -0.12
HDAC6-230ENST00000488543 SLC4A4Q9Y6R1 1079 aa14.31□□□□□ -0.12
HDAC6-230ENST00000488543 KIF13BQ9NQT8 1826 aa14.31□□□□□ -0.12
HDAC6-230ENST00000488543 BCS1LQ9Y276 419 aa14.31□□□□□ -0.12
HDAC6-230ENST00000488543 CD2APQ9Y5K6 639 aa14.31□□□□□ -0.12
HDAC6-230ENST00000488543 BAZ2AQ9UIF9 1905 aaKnown RBP14.3□□□□□ -0.12
HDAC6-230ENST00000488543 WDR19Q8NEZ3 1342 aa14.3□□□□□ -0.12
HDAC6-230ENST00000488543 PPIP5K2O43314 1243 aa14.3□□□□□ -0.12
HDAC6-230ENST00000488543 PRC1O43663 620 aa14.3□□□□□ -0.12
HDAC6-230ENST00000488543 STX6O43752 255 aa14.3□□□□□ -0.12
HDAC6-230ENST00000488543 ECE2O60344 883 aa14.3□□□□□ -0.12
HDAC6-230ENST00000488543 EVCP57679 992 aa14.3□□□□□ -0.12
HDAC6-230ENST00000488543 ZNF445P59923 1031 aa14.3□□□□□ -0.12
HDAC6-230ENST00000488543 CCDC173Q0VFZ6 552 aa14.3□□□□□ -0.12
HDAC6-230ENST00000488543 SCRN1Q12765 414 aa14.3□□□□□ -0.12
HDAC6-230ENST00000488543 SPTY2D1Q68D10 685 aaPredicted RBP14.3□□□□□ -0.12
HDAC6-230ENST00000488543 CC2D2BQ6DHV5 1058 aa14.3□□□□□ -0.12
HDAC6-230ENST00000488543 NAPBQ9H115 298 aa14.3□□□□□ -0.12
HDAC6-230ENST00000488543 SPON1Q9HCB6 807 aa14.3□□□□□ -0.12
HDAC6-230ENST00000488543 FAM205AQ6ZU69 1335 aa14.3□□□□□ -0.12
HDAC6-230ENST00000488543 SMIM22K7EJ46 135 aa14.3□□□□□ -0.12
HDAC6-230ENST00000488543 ZSCAN22P10073 491 aaPredicted RBP14.3□□□□□ -0.12
HDAC6-230ENST00000488543 MCM5P33992 734 aa14.3□□□□□ -0.12
HDAC6-230ENST00000488543 FGD1P98174 961 aa14.3□□□□□ -0.12
HDAC6-230ENST00000488543 KIAA2012Q0VF49 1180 aa14.3□□□□□ -0.12
HDAC6-230ENST00000488543 MTMR6Q9Y217 621 aa14.3□□□□□ -0.12
HDAC6-230ENST00000488543 NEDD4P46934 1319 aa14.29□□□□□ -0.12
HDAC6-230ENST00000488543 GADD45BO75293 160 aaPredicted RBP14.29□□□□□ -0.12
HDAC6-230ENST00000488543 CYB5R4Q7L1T6 521 aa14.29□□□□□ -0.12
HDAC6-230ENST00000488543 PODNQ7Z5L7 613 aa14.29□□□□□ -0.12
HDAC6-230ENST00000488543 RTKN2Q8IZC4 609 aa14.29□□□□□ -0.12
HDAC6-230ENST00000488543 PPP1R9BQ96SB3 815 aa14.29□□□□□ -0.12
HDAC6-230ENST00000488543 INCENPQ9NQS7 918 aa14.29□□□□□ -0.12
HDAC6-230ENST00000488543 DLEC1Q9Y238 1755 aa14.29□□□□□ -0.12
HDAC6-230ENST00000488543 YDJCA8MPS7 323 aa14.29□□□□□ -0.12
HDAC6-230ENST00000488543 JAK2O60674 1132 aa14.29□□□□□ -0.12
HDAC6-230ENST00000488543 RALYLQ86SE5 291 aaKnown RBP14.29□□□□□ -0.12
HDAC6-230ENST00000488543 PDIA3P30101 505 aaKnown RBP14.28□□□□□ -0.12
HDAC6-230ENST00000488543 CTDSPL2Q05D32 466 aa14.28□□□□□ -0.12
HDAC6-230ENST00000488543 STK11IPQ8N1F8 1099 aa14.28□□□□□ -0.12
HDAC6-230ENST00000488543 ZNF274Q96GC6 653 aaPredicted RBP14.28□□□□□ -0.12
HDAC6-230ENST00000488543 LAMB1P07942 1786 aa14.28□□□□□ -0.12
HDAC6-230ENST00000488543 CTDNEP1O95476 244 aa14.27□□□□□ -0.12
HDAC6-230ENST00000488543 TDO2P48775 406 aa14.27□□□□□ -0.12
HDAC6-230ENST00000488543 SCNN1DP51172 638 aa14.27□□□□□ -0.12
HDAC6-230ENST00000488543 SMARCC2Q8TAQ2 1214 aa14.27□□□□□ -0.12
HDAC6-230ENST00000488543 NACAP1Q9BZK3 213 aa14.27□□□□□ -0.12
HDAC6-230ENST00000488543 F13A1P00488 732 aa14.27□□□□□ -0.13
HDAC6-230ENST00000488543 EVX2Q03828 476 aa14.27□□□□□ -0.13
HDAC6-230ENST00000488543 TBC1D22AQ8WUA7 517 aa14.27□□□□□ -0.13
HDAC6-230ENST00000488543 PSMD1Q99460 953 aa14.27□□□□□ -0.13
HDAC6-230ENST00000488543 SCN9AQ15858 1988 aa14.27□□□□□ -0.13
HDAC6-230ENST00000488543 B4E1Z4 1266 aa14.26□□□□□ -0.13
HDAC6-230ENST00000488543 LARGE2Q8N3Y3 721 aa14.26□□□□□ -0.13
HDAC6-230ENST00000488543 NSUN7Q8NE18 718 aaKnown RBP14.26□□□□□ -0.13
HDAC6-230ENST00000488543 SUPT20HQ8NEM7 779 aa14.26□□□□□ -0.13
HDAC6-230ENST00000488543 LLPHQ9BRT6 129 aaKnown RBP14.26□□□□□ -0.13
HDAC6-230ENST00000488543 FHDC1Q9C0D6 1143 aaPredicted RBP14.26□□□□□ -0.13
HDAC6-230ENST00000488543 CYP2D7A0A087X1C5 515 aa14.26□□□□□ -0.13
HDAC6-230ENST00000488543 TRDNQ13061 729 aa14.26□□□□□ -0.13
HDAC6-230ENST00000488543 SLC4A8Q2Y0W8 1093 aa14.26□□□□□ -0.13
HDAC6-230ENST00000488543 AKNAD1Q5T1N1 836 aa14.26□□□□□ -0.13
HDAC6-230ENST00000488543 TMED8Q6PL24 325 aaPredicted RBP14.26□□□□□ -0.13
HDAC6-230ENST00000488543 SH3RF3Q8TEJ3 882 aaPredicted RBP14.26□□□□□ -0.13
HDAC6-230ENST00000488543 STAG1Q8WVM7 1258 aa14.26□□□□□ -0.13
HDAC6-230ENST00000488543 ANP32BQ92688 251 aaKnown RBP14.26□□□□□ -0.13
HDAC6-230ENST00000488543 TTF2Q9UNY4 1162 aaKnown RBP14.26□□□□□ -0.13
HDAC6-230ENST00000488543 HPS5Q9UPZ3 1129 aa14.26□□□□□ -0.13
HDAC6-230ENST00000488543 MYH2Q9UKX2 1941 aa14.26□□□□□ -0.13
HDAC6-230ENST00000488543 SH2B2O14492 632 aaPredicted RBP14.25□□□□□ -0.13
HDAC6-230ENST00000488543 RAD17O75943 681 aa14.25□□□□□ -0.13
HDAC6-230ENST00000488543 CCT2P78371 535 aaKnown RBP14.25□□□□□ -0.13
HDAC6-230ENST00000488543 DACT2Q5SW24 774 aa14.25□□□□□ -0.13
HDAC6-230ENST00000488543 KIAA0825Q8IV33 1275 aa14.25□□□□□ -0.13
HDAC6-230ENST00000488543 NCOA5Q9HCD5 579 aaKnown RBP14.25□□□□□ -0.13
HDAC6-230ENST00000488543 ANAPC4Q9UJX5 808 aa14.25□□□□□ -0.13
HDAC6-230ENST00000488543 PCDHAC2Q9Y5I4 1007 aa14.25□□□□□ -0.13
HDAC6-230ENST00000488543 COL4A5P29400 1685 aa14.25□□□□□ -0.13
HDAC6-230ENST00000488543 NFKBIEO00221 500 aa14.25□□□□□ -0.13
HDAC6-230ENST00000488543 IGSF3O75054 1194 aa14.25□□□□□ -0.13
HDAC6-230ENST00000488543 PDIA4P13667 645 aaKnown RBP14.25□□□□□ -0.13
HDAC6-230ENST00000488543 LARP1BQ659C4 914 aaKnown RBP14.25□□□□□ -0.13
HDAC6-230ENST00000488543 CDK5RAP2Q96SN8 1893 aa14.25□□□□□ -0.13
HDAC6-230ENST00000488543 KLF18A0A0U1RQI7 1052 aa14.24□□□□□ -0.13
HDAC6-230ENST00000488543 USP17L3A6NCW0 530 aa14.24□□□□□ -0.13
HDAC6-230ENST00000488543 USP17L4A6NCW7 530 aa14.24□□□□□ -0.13
HDAC6-230ENST00000488543 BTDP43251 543 aa14.24□□□□□ -0.13
HDAC6-230ENST00000488543 PPARAQ07869 468 aa14.24□□□□□ -0.13
HDAC6-230ENST00000488543 STRIP1Q5VSL9 837 aa14.24□□□□□ -0.13
HDAC6-230ENST00000488543 USP17L1Q7RTZ2 530 aa14.24□□□□□ -0.13
HDAC6-230ENST00000488543 MROH7-TTC4A0A0A0MT08 1334 aa14.24□□□□□ -0.13
HDAC6-230ENST00000488543 MINDY4BA8MYZ0 360 aa14.24□□□□□ -0.13
HDAC6-230ENST00000488543 PDCP20941 246 aa14.24□□□□□ -0.13
HDAC6-230ENST00000488543 CDC37L1Q7L3B6 337 aa14.24□□□□□ -0.13
HDAC6-230ENST00000488543 ZSCAN30Q86W11 494 aa14.24□□□□□ -0.13
HDAC6-230ENST00000488543 IGDCC4Q8TDY8 1250 aa14.24□□□□□ -0.13
HDAC6-230ENST00000488543 SENP2Q9HC62 589 aa14.24□□□□□ -0.13
HDAC6-230ENST00000488543 VPS37CA5D8V6 355 aaPredicted RBP14.23□□□□□ -0.13
HDAC6-230ENST00000488543 GSTO1P78417 241 aa14.23□□□□□ -0.13
HDAC6-230ENST00000488543 GRIPAP1Q4V328 841 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms