RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 TNS4Q8IZW8 715 aa16.98■□□□□ 0.31
SYNE1-226ENST00000488376 DNAJC2Q99543 621 aaKnown RBP16.98■□□□□ 0.31
SYNE1-226ENST00000488376 R3HDMLQ9H3Y0 253 aa16.98■□□□□ 0.31
SYNE1-226ENST00000488376 TEX11Q8IYF3 940 aa16.97■□□□□ 0.31
SYNE1-226ENST00000488376 MIGA1Q8NAN2 632 aa16.97■□□□□ 0.31
SYNE1-226ENST00000488376 ZNF341Q9BYN7 854 aa16.97■□□□□ 0.31
SYNE1-226ENST00000488376 SAGE1Q9NXZ1 904 aa16.97■□□□□ 0.31
SYNE1-226ENST00000488376 UNCXA6NJT0 531 aa16.96■□□□□ 0.31
SYNE1-226ENST00000488376 FAM196BA6NMK8 535 aa16.96■□□□□ 0.31
SYNE1-226ENST00000488376 IGF2BP3O00425 579 aaKnown RBP eCLIP16.96■□□□□ 0.31
SYNE1-226ENST00000488376 GOLIM4O00461 696 aa16.96■□□□□ 0.31
SYNE1-226ENST00000488376 TBC1D8O95759 1140 aa16.96■□□□□ 0.31
SYNE1-226ENST00000488376 ZBTB48P10074 688 aaPredicted RBP16.96■□□□□ 0.31
SYNE1-226ENST00000488376 CYP7A1P22680 504 aa16.96■□□□□ 0.31
SYNE1-226ENST00000488376 SLFNL1Q499Z3 407 aa16.96■□□□□ 0.31
SYNE1-226ENST00000488376 TSHZ3Q63HK5 1081 aa16.96■□□□□ 0.31
SYNE1-226ENST00000488376 DCAF15Q66K64 600 aa16.96■□□□□ 0.31
SYNE1-226ENST00000488376 ZSCAN29Q8IWY8 852 aaPredicted RBP16.96■□□□□ 0.31
SYNE1-226ENST00000488376 MAGEB6Q8N7X4 407 aa16.96■□□□□ 0.31
SYNE1-226ENST00000488376 OTUD5Q96G74 571 aa16.96■□□□□ 0.31
SYNE1-226ENST00000488376 MS4A4AQ96JQ5 239 aa16.96■□□□□ 0.31
SYNE1-226ENST00000488376 BOLA2Q9H3K6 86 aa16.96■□□□□ 0.31
SYNE1-226ENST00000488376 ZNF112Q9UJU3 913 aa16.96■□□□□ 0.31
SYNE1-226ENST00000488376 CSADQ9Y600 493 aa16.96■□□□□ 0.31
SYNE1-226ENST00000488376 PHF20L1A8MW92 1017 aa16.95■□□□□ 0.3
SYNE1-226ENST00000488376 CHGBP05060 677 aa16.95■□□□□ 0.3
SYNE1-226ENST00000488376 PTPN18Q99952 460 aa16.95■□□□□ 0.3
SYNE1-226ENST00000488376 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.95■□□□□ 0.3
SYNE1-226ENST00000488376 DOCK2Q92608 1830 aa16.94■□□□□ 0.3
SYNE1-226ENST00000488376 SPDYE5A6NIY4 337 aa16.94■□□□□ 0.3
SYNE1-226ENST00000488376 ATP5JP18859 108 aa16.94■□□□□ 0.3
SYNE1-226ENST00000488376 PPP4CP60510 307 aa16.94■□□□□ 0.3
SYNE1-226ENST00000488376 SREBF2Q12772 1141 aa16.94■□□□□ 0.3
SYNE1-226ENST00000488376 IFNL1Q8IU54 200 aa16.94■□□□□ 0.3
SYNE1-226ENST00000488376 MAPKAPK5Q8IW41 473 aa16.94■□□□□ 0.3
SYNE1-226ENST00000488376 REM2Q8IYK8 340 aaPredicted RBP16.94■□□□□ 0.3
SYNE1-226ENST00000488376 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.94■□□□□ 0.3
SYNE1-226ENST00000488376 TGFBRAP1Q8WUH2 860 aa16.94■□□□□ 0.3
SYNE1-226ENST00000488376 HOOK2Q96ED9 719 aa16.94■□□□□ 0.3
SYNE1-226ENST00000488376 OSBPL5Q9H0X9 879 aaPredicted RBP16.94■□□□□ 0.3
SYNE1-226ENST00000488376 MANSC4A6NHS7 340 aaPredicted RBP16.93■□□□□ 0.3
SYNE1-226ENST00000488376 PDE6AP16499 860 aa16.93■□□□□ 0.3
SYNE1-226ENST00000488376 SLC4A8Q2Y0W8 1093 aa16.93■□□□□ 0.3
SYNE1-226ENST00000488376 EXOC6Q8TAG9 804 aa16.93■□□□□ 0.3
SYNE1-226ENST00000488376 OTUD7AQ8TE49 926 aaPredicted RBP16.93■□□□□ 0.3
SYNE1-226ENST00000488376 BRI3BPQ8WY22 251 aa16.93■□□□□ 0.3
SYNE1-226ENST00000488376 SUPT16HQ9Y5B9 1047 aaKnown RBP16.93■□□□□ 0.3
SYNE1-226ENST00000488376 FLT1P17948 1338 aa16.93■□□□□ 0.3
SYNE1-226ENST00000488376 IRF6O14896 467 aa16.92■□□□□ 0.3
SYNE1-226ENST00000488376 NPM3O75607 178 aaKnown RBP16.92■□□□□ 0.3
SYNE1-226ENST00000488376 BAG3O95817 575 aa16.92■□□□□ 0.3
SYNE1-226ENST00000488376 MAP3K10Q02779 954 aa16.92■□□□□ 0.3
SYNE1-226ENST00000488376 MAP3K12Q12852 859 aa16.92■□□□□ 0.3
SYNE1-226ENST00000488376 RRP1BQ14684 758 aaKnown RBP16.92■□□□□ 0.3
SYNE1-226ENST00000488376 ERO1BQ86YB8 467 aa16.92■□□□□ 0.3
SYNE1-226ENST00000488376 HAUS7Q99871 368 aa16.92■□□□□ 0.3
SYNE1-226ENST00000488376 NOL10Q9BSC4 688 aaKnown RBP16.92■□□□□ 0.3
SYNE1-226ENST00000488376 PAG1Q9NWQ8 432 aa16.92■□□□□ 0.3
SYNE1-226ENST00000488376 SAP30BPQ9UHR5 308 aaKnown RBP16.92■□□□□ 0.3
SYNE1-226ENST00000488376 LAMB1P07942 1786 aa16.92■□□□□ 0.3
SYNE1-226ENST00000488376 TCRBV5S4A2TA0A5A2 114 aa16.91■□□□□ 0.3
SYNE1-226ENST00000488376 TESPA1A2RU30 521 aaPredicted RBP16.91■□□□□ 0.3
SYNE1-226ENST00000488376 MAP4K4O95819 1239 aaPredicted RBP16.91■□□□□ 0.3
SYNE1-226ENST00000488376 SLC9C2Q5TAH2 1124 aa16.91■□□□□ 0.3
SYNE1-226ENST00000488376 IFFO2Q5TF58 517 aa16.91■□□□□ 0.3
SYNE1-226ENST00000488376 CCDC84Q86UT8 332 aaPredicted RBP16.91■□□□□ 0.3
SYNE1-226ENST00000488376 RIOK1Q9BRS2 568 aaKnown RBP16.91■□□□□ 0.3
SYNE1-226ENST00000488376 COL2A1P02458 1487 aaPredicted RBP16.91■□□□□ 0.3
SYNE1-226ENST00000488376 ZNF532Q9HCE3 1301 aa16.91■□□□□ 0.3
SYNE1-226ENST00000488376 CCL15-CCL14A0A0B4J2E2 113 aa16.9■□□□□ 0.3
SYNE1-226ENST00000488376 TTF1Q15361 905 aaPredicted RBP16.9■□□□□ 0.3
SYNE1-226ENST00000488376 CCL15Q16663 113 aa16.9■□□□□ 0.3
SYNE1-226ENST00000488376 NOL9Q5SY16 702 aaKnown RBP16.9■□□□□ 0.3
SYNE1-226ENST00000488376 FAM43AQ8N2R8 423 aa16.9■□□□□ 0.3
SYNE1-226ENST00000488376 DNAJC18Q9H819 358 aa16.9■□□□□ 0.3
SYNE1-226ENST00000488376 PALD1Q9ULE6 856 aa16.9■□□□□ 0.3
SYNE1-226ENST00000488376 SIPA1L1O43166 1804 aa16.9■□□□□ 0.3
SYNE1-226ENST00000488376 CAPN15O75808 1086 aa16.89■□□□□ 0.29
SYNE1-226ENST00000488376 PLCG2P16885 1265 aa16.89■□□□□ 0.29
SYNE1-226ENST00000488376 EVX2Q03828 476 aa16.89■□□□□ 0.29
SYNE1-226ENST00000488376 PPIL2Q13356 520 aa16.89■□□□□ 0.29
SYNE1-226ENST00000488376 SHROOM1Q2M3G4 852 aaPredicted RBP16.89■□□□□ 0.29
SYNE1-226ENST00000488376 ZNF296Q8WUU4 475 aaPredicted RBP16.89■□□□□ 0.29
SYNE1-226ENST00000488376 ECHDC1Q9NTX5 307 aa16.89■□□□□ 0.29
SYNE1-226ENST00000488376 CDK5RAP2Q96SN8 1893 aa16.88■□□□□ 0.29
SYNE1-226ENST00000488376 CASP8AP2Q9UKL3 1982 aa16.88■□□□□ 0.29
SYNE1-226ENST00000488376 IGSF3O75054 1194 aa16.88■□□□□ 0.29
SYNE1-226ENST00000488376 GTF2A2P52657 109 aa16.88■□□□□ 0.29
SYNE1-226ENST00000488376 INHBEP58166 350 aa16.88■□□□□ 0.29
SYNE1-226ENST00000488376 IRX6P78412 446 aaPredicted RBP16.88■□□□□ 0.29
SYNE1-226ENST00000488376 JAG1P78504 1218 aa16.88■□□□□ 0.29
SYNE1-226ENST00000488376 PPATQ06203 517 aa16.88■□□□□ 0.29
SYNE1-226ENST00000488376 CRHR2Q13324 411 aa16.88■□□□□ 0.29
SYNE1-226ENST00000488376 SCYL3Q8IZE3 742 aa16.88■□□□□ 0.29
SYNE1-226ENST00000488376 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.88■□□□□ 0.29
SYNE1-226ENST00000488376 AK9Q5TCS8 1911 aa16.88■□□□□ 0.29
SYNE1-226ENST00000488376 MAGEB6P1A0A0J9YX57 407 aa16.87■□□□□ 0.29
SYNE1-226ENST00000488376 GPR25O00155 361 aa16.87■□□□□ 0.29
SYNE1-226ENST00000488376 TBC1D12O60347 775 aa16.87■□□□□ 0.29
SYNE1-226ENST00000488376 PTPRAP18433 802 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms