RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 NSUN4Q96CB9 384 aaKnown RBP27.8■■■□□ 2.04
PTPN4-211ENST00000488279 RAI14Q9P0K7 980 aa27.8■■■□□ 2.04
PTPN4-211ENST00000488279 TLR2O60603 784 aa27.79■■■□□ 2.04
PTPN4-211ENST00000488279 MCAMP43121 646 aa27.79■■■□□ 2.04
PTPN4-211ENST00000488279 PICALMQ13492 652 aa27.79■■■□□ 2.04
PTPN4-211ENST00000488279 TNNI3KQ59H18 835 aa27.79■■■□□ 2.04
PTPN4-211ENST00000488279 CCDC158Q5M9N0 1113 aa27.79■■■□□ 2.04
PTPN4-211ENST00000488279 ZNF384Q8TF68 577 aa27.79■■■□□ 2.04
PTPN4-211ENST00000488279 LRP2BPQ9P2M1 347 aa27.79■■■□□ 2.04
PTPN4-211ENST00000488279 FPGT-TNNI3KV9GXZ4 949 aa27.79■■■□□ 2.04
PTPN4-211ENST00000488279 CENPFP49454 3210 aa27.79■■■□□ 2.04
PTPN4-211ENST00000488279 PHF20L1A8MW92 1017 aa27.78■■■□□ 2.04
PTPN4-211ENST00000488279 SH3BP5LQ7L8J4 393 aa27.78■■■□□ 2.04
PTPN4-211ENST00000488279 DDX4Q9NQI0 724 aaKnown RBP27.78■■■□□ 2.04
PTPN4-211ENST00000488279 KCNH4Q9UQ05 1017 aa27.78■■■□□ 2.04
PTPN4-211ENST00000488279 MYH2Q9UKX2 1941 aa27.77■■■□□ 2.04
PTPN4-211ENST00000488279 DDTLA6NHG4 134 aaPredicted RBP27.77■■■□□ 2.04
PTPN4-211ENST00000488279 MAP4K4O95819 1239 aaPredicted RBP27.77■■■□□ 2.04
PTPN4-211ENST00000488279 RHBDL3P58872 404 aa27.77■■■□□ 2.04
PTPN4-211ENST00000488279 MAP3K10Q02779 954 aa27.77■■■□□ 2.04
PTPN4-211ENST00000488279 TTC39AQ5SRH9 613 aa27.77■■■□□ 2.04
PTPN4-211ENST00000488279 NOP58Q9Y2X3 529 aaKnown RBP27.77■■■□□ 2.04
PTPN4-211ENST00000488279 RFX7Q2KHR2 1363 aa27.76■■■□□ 2.03
PTPN4-211ENST00000488279 ATRNL1Q5VV63 1379 aa27.76■■■□□ 2.03
PTPN4-211ENST00000488279 NPM3O75607 178 aaKnown RBP27.76■■■□□ 2.03
PTPN4-211ENST00000488279 ANKRD23Q86SG2 305 aa27.76■■■□□ 2.03
PTPN4-211ENST00000488279 PICK1Q9NRD5 415 aa27.76■■■□□ 2.03
PTPN4-211ENST00000488279 AK9Q5TCS8 1911 aa27.76■■■□□ 2.03
PTPN4-211ENST00000488279 CXCL11O14625 94 aa27.75■■■□□ 2.03
PTPN4-211ENST00000488279 CAP1Q01518 475 aa27.75■■■□□ 2.03
PTPN4-211ENST00000488279 SCYL3Q8IZE3 742 aa27.75■■■□□ 2.03
PTPN4-211ENST00000488279 DBNDD2Q9BQY9 259 aa27.75■■■□□ 2.03
PTPN4-211ENST00000488279 KIF22Q14807 665 aa27.74■■■□□ 2.03
PTPN4-211ENST00000488279 SNRKQ9NRH2 765 aa27.74■■■□□ 2.03
PTPN4-211ENST00000488279 ZHX2Q9Y6X8 837 aa27.74■■■□□ 2.03
PTPN4-211ENST00000488279 PDHXO00330 501 aa27.73■■■□□ 2.03
PTPN4-211ENST00000488279 NOL10Q9BSC4 688 aaKnown RBP27.73■■■□□ 2.03
PTPN4-211ENST00000488279 CTNND1O60716 968 aaKnown RBP27.72■■■□□ 2.03
PTPN4-211ENST00000488279 PTPRAP18433 802 aa27.72■■■□□ 2.03
PTPN4-211ENST00000488279 PANK1Q8TE04 598 aa27.72■■■□□ 2.03
PTPN4-211ENST00000488279 ZNF512BQ96KM6 892 aaPredicted RBP27.72■■■□□ 2.03
PTPN4-211ENST00000488279 TBC1D12O60347 775 aa27.71■■■□□ 2.03
PTPN4-211ENST00000488279 MS4A1P11836 297 aa27.71■■■□□ 2.03
PTPN4-211ENST00000488279 LACTBP83111 547 aaPredicted RBP27.71■■■□□ 2.03
PTPN4-211ENST00000488279 MOGSQ13724 837 aa27.71■■■□□ 2.03
PTPN4-211ENST00000488279 NAA16Q6N069 864 aaPredicted RBP27.71■■■□□ 2.03
PTPN4-211ENST00000488279 ARMC5Q96C12 935 aa27.71■■■□□ 2.03
PTPN4-211ENST00000488279 BAG3O95817 575 aa27.7■■■□□ 2.02
PTPN4-211ENST00000488279 CEP85Q6P2H3 762 aa27.7■■■□□ 2.02
PTPN4-211ENST00000488279 C17orf99Q6UX52 265 aa27.7■■■□□ 2.02
PTPN4-211ENST00000488279 FASTKD5Q7L8L6 764 aaKnown RBP27.7■■■□□ 2.02
PTPN4-211ENST00000488279 SLURP2P0DP57 97 aa27.69■■■□□ 2.02
PTPN4-211ENST00000488279 TEX11Q8IYF3 940 aa27.69■■■□□ 2.02
PTPN4-211ENST00000488279 AFG3L2Q9Y4W6 797 aa27.69■■■□□ 2.02
PTPN4-211ENST00000488279 GNRH1P01148 92 aa27.68■■■□□ 2.02
PTPN4-211ENST00000488279 CYP2E1P05181 493 aaPredicted RBP27.68■■■□□ 2.02
PTPN4-211ENST00000488279 NBPF11Q86T75 865 aa27.68■■■□□ 2.02
PTPN4-211ENST00000488279 CCDC8Q9H0W5 538 aaPredicted RBP27.68■■■□□ 2.02
PTPN4-211ENST00000488279 OSBPL5Q9H0X9 879 aaPredicted RBP27.68■■■□□ 2.02
PTPN4-211ENST00000488279 XPO5Q9HAV4 1204 aaKnown RBP eCLIP27.68■■■□□ 2.02
PTPN4-211ENST00000488279 CPA4Q9UI42 421 aa27.68■■■□□ 2.02
PTPN4-211ENST00000488279 DBNLQ9UJU6 430 aaKnown RBP27.68■■■□□ 2.02
PTPN4-211ENST00000488279 A0A0G2JLL6 359 aaPredicted RBP27.67■■■□□ 2.02
PTPN4-211ENST00000488279 IGSF3O75054 1194 aa27.67■■■□□ 2.02
PTPN4-211ENST00000488279 PLCG2P16885 1265 aa27.67■■■□□ 2.02
PTPN4-211ENST00000488279 GPAT2Q6NUI2 795 aa27.67■■■□□ 2.02
PTPN4-211ENST00000488279 PRRT2Q7Z6L0 340 aaPredicted RBP27.67■■■□□ 2.02
PTPN4-211ENST00000488279 SH3RF3Q8TEJ3 882 aaPredicted RBP27.67■■■□□ 2.02
PTPN4-211ENST00000488279 EAF2Q96CJ1 260 aaPredicted RBP27.67■■■□□ 2.02
PTPN4-211ENST00000488279 PARK7Q99497 189 aaKnown RBP27.67■■■□□ 2.02
PTPN4-211ENST00000488279 ARHGAP39Q9C0H5 1083 aa27.67■■■□□ 2.02
PTPN4-211ENST00000488279 PTCH2Q9Y6C5 1203 aa27.67■■■□□ 2.02
PTPN4-211ENST00000488279 ZAP70P43403 619 aa27.66■■■□□ 2.02
PTPN4-211ENST00000488279 SLC9C1Q4G0N8 1177 aa27.66■■■□□ 2.02
PTPN4-211ENST00000488279 AATFQ9NY61 560 aaKnown RBP eCLIP27.66■■■□□ 2.02
PTPN4-211ENST00000488279 PPP4CP60510 307 aa27.65■■■□□ 2.02
PTPN4-211ENST00000488279 ERC1Q8IUD2 1116 aa27.65■■■□□ 2.02
PTPN4-211ENST00000488279 TLR7Q9NYK1 1049 aaKnown RBP27.65■■■□□ 2.02
PTPN4-211ENST00000488279 POTEFA5A3E0 1075 aa27.64■■■□□ 2.02
PTPN4-211ENST00000488279 EXOC6BQ9Y2D4 811 aa27.64■■■□□ 2.02
PTPN4-211ENST00000488279 DOCK2Q92608 1830 aa27.63■■■□□ 2.01
PTPN4-211ENST00000488279 FAM196BA6NMK8 535 aa27.63■■■□□ 2.01
PTPN4-211ENST00000488279 PSMC4P43686 418 aa27.63■■■□□ 2.01
PTPN4-211ENST00000488279 PRMT2P55345 433 aa27.63■■■□□ 2.01
PTPN4-211ENST00000488279 HSP90AB4PQ58FF6 505 aa27.63■■■□□ 2.01
PTPN4-211ENST00000488279 GADL1Q6ZQY3 521 aa27.63■■■□□ 2.01
PTPN4-211ENST00000488279 ZNF333Q96JL9 665 aa27.63■■■□□ 2.01
PTPN4-211ENST00000488279 TMEM106CQ9BVX2 250 aa27.63■■■□□ 2.01
PTPN4-211ENST00000488279 DHX36Q9H2U1 1008 aaKnown RBP27.63■■■□□ 2.01
PTPN4-211ENST00000488279 PI4KBQ9UBF8 816 aa27.63■■■□□ 2.01
PTPN4-211ENST00000488279 MKI67P46013 3256 aaKnown RBP27.63■■■□□ 2.01
PTPN4-211ENST00000488279 ADGRA2Q96PE1 1338 aa27.63■■■□□ 2.01
PTPN4-211ENST00000488279 COL2A1P02458 1487 aaPredicted RBP27.63■■■□□ 2.01
PTPN4-211ENST00000488279 TRIM75PA6NK02 468 aa27.62■■■□□ 2.01
PTPN4-211ENST00000488279 ECM2O94769 699 aaPredicted RBP27.62■■■□□ 2.01
PTPN4-211ENST00000488279 CYP2C8P10632 490 aa27.62■■■□□ 2.01
PTPN4-211ENST00000488279 HOXD10P28358 340 aa27.62■■■□□ 2.01
PTPN4-211ENST00000488279 PIH1D3Q9NQM4 214 aaKnown RBP27.62■■■□□ 2.01
PTPN4-211ENST00000488279 HERC5Q9UII4 1024 aaKnown RBP27.62■■■□□ 2.01
PTPN4-211ENST00000488279 SLC45A1Q9Y2W3 748 aa27.62■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms