RNA–Protein interactions for RNA: ENST00000485397.1

COL27A1-205, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 5

Gene COL27A1, Length 463 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-205ENST00000485397 DDX4Q9NQI0 724 aaKnown RBP23.8■■□□□ 1.4
COL27A1-205ENST00000485397 DDTLA6NHG4 134 aaPredicted RBP23.79■■□□□ 1.4
COL27A1-205ENST00000485397 GNAI2P04899 355 aa23.79■■□□□ 1.4
COL27A1-205ENST00000485397 CTGFP29279 349 aa23.79■■□□□ 1.4
COL27A1-205ENST00000485397 PICALMQ13492 652 aa23.79■■□□□ 1.4
COL27A1-205ENST00000485397 ERICH6Q7L0X2 663 aa23.79■■□□□ 1.4
COL27A1-205ENST00000485397 SH3TC2Q8TF17 1288 aa23.79■■□□□ 1.4
COL27A1-205ENST00000485397 HMG20BQ9P0W2 317 aa23.79■■□□□ 1.4
COL27A1-205ENST00000485397 MROH7-TTC4A0A0A0MT08 1334 aa23.79■■□□□ 1.4
COL27A1-205ENST00000485397 ADGRA2Q96PE1 1338 aa23.79■■□□□ 1.4
COL27A1-205ENST00000485397 PNMA6EA0A0J9YXQ4 647 aa23.78■■□□□ 1.4
COL27A1-205ENST00000485397 CXCL11O14625 94 aa23.78■■□□□ 1.4
COL27A1-205ENST00000485397 MECOMQ03112 1051 aa23.78■■□□□ 1.4
COL27A1-205ENST00000485397 PI16Q6UXB8 463 aa23.78■■□□□ 1.4
COL27A1-205ENST00000485397 SCYL3Q8IZE3 742 aa23.78■■□□□ 1.4
COL27A1-205ENST00000485397 ZNF384Q8TF68 577 aa23.78■■□□□ 1.4
COL27A1-205ENST00000485397 ZHX2Q9Y6X8 837 aa23.78■■□□□ 1.4
COL27A1-205ENST00000485397 RBBP6Q7Z6E9 1792 aaKnown RBP23.78■■□□□ 1.4
COL27A1-205ENST00000485397 GPAT2Q6NUI2 795 aa23.77■■□□□ 1.4
COL27A1-205ENST00000485397 TBC1D9Q6ZT07 1266 aa23.77■■□□□ 1.4
COL27A1-205ENST00000485397 GPR75-ASB3A0A0A6YYF3 556 aa23.76■■□□□ 1.39
COL27A1-205ENST00000485397 GNRH1P01148 92 aa23.76■■□□□ 1.39
COL27A1-205ENST00000485397 PSMC4P43686 418 aa23.76■■□□□ 1.39
COL27A1-205ENST00000485397 RHBDL3P58872 404 aa23.76■■□□□ 1.39
COL27A1-205ENST00000485397 MAP3K10Q02779 954 aa23.76■■□□□ 1.39
COL27A1-205ENST00000485397 G3BP1Q13283 466 aaKnown RBP eCLIP23.76■■□□□ 1.39
COL27A1-205ENST00000485397 SLC4A8Q2Y0W8 1093 aa23.76■■□□□ 1.39
COL27A1-205ENST00000485397 GORABQ5T7V8 394 aa23.76■■□□□ 1.39
COL27A1-205ENST00000485397 TRIM47Q96LD4 638 aa23.76■■□□□ 1.39
COL27A1-205ENST00000485397 PICK1Q9NRD5 415 aa23.76■■□□□ 1.39
COL27A1-205ENST00000485397 CYP2C8P10632 490 aa23.75■■□□□ 1.39
COL27A1-205ENST00000485397 PTPRAP18433 802 aa23.75■■□□□ 1.39
COL27A1-205ENST00000485397 SPATA5Q8NB90 893 aa23.75■■□□□ 1.39
COL27A1-205ENST00000485397 DOCK2Q92608 1830 aa23.75■■□□□ 1.39
COL27A1-205ENST00000485397 PRMT2P55345 433 aa23.74■■□□□ 1.39
COL27A1-205ENST00000485397 TMEM57Q8N5G2 664 aa23.74■■□□□ 1.39
COL27A1-205ENST00000485397 PARK7Q99497 189 aaKnown RBP23.74■■□□□ 1.39
COL27A1-205ENST00000485397 SRRDQ9UH36 339 aa23.74■■□□□ 1.39
COL27A1-205ENST00000485397 AFG3L2Q9Y4W6 797 aa23.74■■□□□ 1.39
COL27A1-205ENST00000485397 A0A0G2JLL6 359 aaPredicted RBP23.73■■□□□ 1.39
COL27A1-205ENST00000485397 FMNL1O95466 1100 aaPredicted RBP23.73■■□□□ 1.39
COL27A1-205ENST00000485397 OSBPP22059 807 aa23.73■■□□□ 1.39
COL27A1-205ENST00000485397 ARID4AP29374 1257 aaPredicted RBP23.73■■□□□ 1.39
COL27A1-205ENST00000485397 PRRT2Q7Z6L0 340 aaPredicted RBP23.73■■□□□ 1.39
COL27A1-205ENST00000485397 NSUN4Q96CB9 384 aaKnown RBP23.73■■□□□ 1.39
COL27A1-205ENST00000485397 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.73■■□□□ 1.39
COL27A1-205ENST00000485397 CTNND1O60716 968 aaKnown RBP23.72■■□□□ 1.39
COL27A1-205ENST00000485397 MCAMP43121 646 aa23.72■■□□□ 1.39
COL27A1-205ENST00000485397 GADL1Q6ZQY3 521 aa23.72■■□□□ 1.39
COL27A1-205ENST00000485397 FASTKD5Q7L8L6 764 aaKnown RBP23.72■■□□□ 1.39
COL27A1-205ENST00000485397 CCDC84Q86UT8 332 aaPredicted RBP23.72■■□□□ 1.39
COL27A1-205ENST00000485397 RAI14Q9P0K7 980 aa23.72■■□□□ 1.39
COL27A1-205ENST00000485397 FAM196BA6NMK8 535 aa23.71■■□□□ 1.39
COL27A1-205ENST00000485397 LDHCP07864 332 aa23.71■■□□□ 1.39
COL27A1-205ENST00000485397 BCRP11274 1271 aa23.71■■□□□ 1.39
COL27A1-205ENST00000485397 GSTO1P78417 241 aa23.71■■□□□ 1.39
COL27A1-205ENST00000485397 ZKSCAN2Q63HK3 967 aa23.71■■□□□ 1.39
COL27A1-205ENST00000485397 CENPFP49454 3210 aa23.71■■□□□ 1.39
COL27A1-205ENST00000485397 HOXD10P28358 340 aa23.7■■□□□ 1.38
COL27A1-205ENST00000485397 MTFR1Q15390 333 aa23.7■■□□□ 1.38
COL27A1-205ENST00000485397 MYPNQ86TC9 1320 aa23.69■■□□□ 1.38
COL27A1-205ENST00000485397 TRIM75PA6NK02 468 aa23.69■■□□□ 1.38
COL27A1-205ENST00000485397 NPM3O75607 178 aaKnown RBP23.69■■□□□ 1.38
COL27A1-205ENST00000485397 UQCRFS1P1P0C7P4 283 aa23.69■■□□□ 1.38
COL27A1-205ENST00000485397 POLA2Q14181 598 aa23.69■■□□□ 1.38
COL27A1-205ENST00000485397 RAET1EQ8TD07 263 aa23.69■■□□□ 1.38
COL27A1-205ENST00000485397 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.69■■□□□ 1.38
COL27A1-205ENST00000485397 TBC1D12O60347 775 aa23.68■■□□□ 1.38
COL27A1-205ENST00000485397 GCC1Q96CN9 775 aa23.68■■□□□ 1.38
COL27A1-205ENST00000485397 C1orf115Q9H7X2 142 aa23.68■■□□□ 1.38
COL27A1-205ENST00000485397 SNRKQ9NRH2 765 aa23.68■■□□□ 1.38
COL27A1-205ENST00000485397 LRP2BPQ9P2M1 347 aa23.68■■□□□ 1.38
COL27A1-205ENST00000485397 GRK4P32298 578 aa23.67■■□□□ 1.38
COL27A1-205ENST00000485397 FCGRTP55899 365 aa23.67■■□□□ 1.38
COL27A1-205ENST00000485397 ATP8B2P98198 1209 aa23.67■■□□□ 1.38
COL27A1-205ENST00000485397 PRKCZQ05513 592 aa23.67■■□□□ 1.38
COL27A1-205ENST00000485397 DBNDD2Q9BQY9 259 aa23.67■■□□□ 1.38
COL27A1-205ENST00000485397 OSBPL5Q9H0X9 879 aaPredicted RBP23.67■■□□□ 1.38
COL27A1-205ENST00000485397 MAP4K4O95819 1239 aaPredicted RBP23.66■■□□□ 1.38
COL27A1-205ENST00000485397 TNNI3KQ59H18 835 aa23.66■■□□□ 1.38
COL27A1-205ENST00000485397 TEX11Q8IYF3 940 aa23.66■■□□□ 1.38
COL27A1-205ENST00000485397 SSH3Q8TE77 659 aa23.66■■□□□ 1.38
COL27A1-205ENST00000485397 GPR108Q9NPR9 543 aa23.66■■□□□ 1.38
COL27A1-205ENST00000485397 SLC45A1Q9Y2W3 748 aa23.66■■□□□ 1.38
COL27A1-205ENST00000485397 FPGT-TNNI3KV9GXZ4 949 aa23.66■■□□□ 1.38
COL27A1-205ENST00000485397 DOCK1Q14185 1865 aa23.66■■□□□ 1.38
COL27A1-205ENST00000485397 MKI67P46013 3256 aaKnown RBP23.65■■□□□ 1.38
COL27A1-205ENST00000485397 OS9Q13438 667 aaPredicted RBP23.65■■□□□ 1.38
COL27A1-205ENST00000485397 RRP1BQ14684 758 aaKnown RBP23.65■■□□□ 1.38
COL27A1-205ENST00000485397 TTC39AQ5SRH9 613 aa23.65■■□□□ 1.38
COL27A1-205ENST00000485397 SH3RF3Q8TEJ3 882 aaPredicted RBP23.65■■□□□ 1.38
COL27A1-205ENST00000485397 GABRQQ9UN88 632 aa23.65■■□□□ 1.38
COL27A1-205ENST00000485397 BRCA2P51587 3418 aa23.65■■□□□ 1.38
COL27A1-205ENST00000485397 PHIPQ8WWQ0 1821 aa23.64■■□□□ 1.38
COL27A1-205ENST00000485397 SURF6O75683 361 aaKnown RBP23.64■■□□□ 1.37
COL27A1-205ENST00000485397 HNRNPUQ00839 825 aaKnown RBP eCLIP23.64■■□□□ 1.37
COL27A1-205ENST00000485397 HABP4Q5JVS0 413 aaKnown RBP23.63■■□□□ 1.37
COL27A1-205ENST00000485397 CCDC158Q5M9N0 1113 aa23.63■■□□□ 1.37
COL27A1-205ENST00000485397 TREML2Q5T2D2 321 aa23.63■■□□□ 1.37
COL27A1-205ENST00000485397 SMCR8Q8TEV9 937 aaPredicted RBP23.63■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms