RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 RBM5P52756 815 aaKnown RBP eCLIP12.06□□□□□ -0.48
USP39-215ENST00000481409 ANKRD1Q15327 319 aa12.06□□□□□ -0.48
USP39-215ENST00000481409 CFAP100Q494V2 611 aa12.06□□□□□ -0.48
USP39-215ENST00000481409 DPY19L2Q6NUT2 758 aa12.06□□□□□ -0.48
USP39-215ENST00000481409 TTC6Q86TZ1 520 aa12.06□□□□□ -0.48
USP39-215ENST00000481409 SH3RF3Q8TEJ3 882 aaPredicted RBP12.06□□□□□ -0.48
USP39-215ENST00000481409 STAG1Q8WVM7 1258 aa12.06□□□□□ -0.48
USP39-215ENST00000481409 NEK1Q96PY6 1258 aa12.06□□□□□ -0.48
USP39-215ENST00000481409 MXD3Q9BW11 206 aa12.06□□□□□ -0.48
USP39-215ENST00000481409 KRT23Q9C075 422 aa12.06□□□□□ -0.48
USP39-215ENST00000481409 DHX36Q9H2U1 1008 aaKnown RBP12.06□□□□□ -0.48
USP39-215ENST00000481409 ZSWIM6Q9HCJ5 1215 aa12.06□□□□□ -0.48
USP39-215ENST00000481409 EPB41L4AQ9HCS5 686 aaPredicted RBP12.06□□□□□ -0.48
USP39-215ENST00000481409 USP40Q9NVE5 1235 aa12.06□□□□□ -0.48
USP39-215ENST00000481409 RNF181Q9P0P0 153 aa12.06□□□□□ -0.48
USP39-215ENST00000481409 CYP46A1Q9Y6A2 500 aa12.06□□□□□ -0.48
USP39-215ENST00000481409 ROBO3Q96MS0 1386 aa12.05□□□□□ -0.48
USP39-215ENST00000481409 LAMB1P07942 1786 aa12.05□□□□□ -0.48
USP39-215ENST00000481409 SPDYE2BA6NHP3 402 aa12.05□□□□□ -0.48
USP39-215ENST00000481409 H7C1D1 291 aa12.05□□□□□ -0.48
USP39-215ENST00000481409 PRKAB2O43741 272 aa12.05□□□□□ -0.48
USP39-215ENST00000481409 FGRP09769 529 aa12.05□□□□□ -0.48
USP39-215ENST00000481409 SPDYE6P0CI01 402 aa12.05□□□□□ -0.48
USP39-215ENST00000481409 PPARAQ07869 468 aa12.05□□□□□ -0.48
USP39-215ENST00000481409 AKNAD1Q5T1N1 836 aa12.05□□□□□ -0.48
USP39-215ENST00000481409 CDC42EP5Q6NZY7 148 aa12.05□□□□□ -0.48
USP39-215ENST00000481409 CTR9Q6PD62 1173 aa12.05□□□□□ -0.48
USP39-215ENST00000481409 BLOC1S2Q6QNY1 142 aa12.05□□□□□ -0.48
USP39-215ENST00000481409 RUFY3Q7L099 469 aa12.05□□□□□ -0.48
USP39-215ENST00000481409 RASEFQ8IZ41 740 aa12.05□□□□□ -0.48
USP39-215ENST00000481409 FBXL16Q8N461 479 aa12.05□□□□□ -0.48
USP39-215ENST00000481409 NCOA7Q8NI08 942 aa12.05□□□□□ -0.48
USP39-215ENST00000481409 SDR42E1Q8WUS8 393 aa12.05□□□□□ -0.48
USP39-215ENST00000481409 ZBED3Q96IU2 234 aaPredicted RBP12.05□□□□□ -0.48
USP39-215ENST00000481409 PALD1Q9ULE6 856 aa12.05□□□□□ -0.48
USP39-215ENST00000481409 NAV1Q8NEY1 1877 aa12.05□□□□□ -0.48
USP39-215ENST00000481409 CDK5RAP2Q96SN8 1893 aa12.05□□□□□ -0.48
USP39-215ENST00000481409 DDX60LQ5H9U9 1706 aaKnown RBP12.04□□□□□ -0.48
USP39-215ENST00000481409 E7EWF7 191 aa12.04□□□□□ -0.48
USP39-215ENST00000481409 PDE4BQ07343 736 aa12.04□□□□□ -0.48
USP39-215ENST00000481409 TNFAIP1Q13829 316 aa12.04□□□□□ -0.48
USP39-215ENST00000481409 C12orf60Q5U649 245 aa12.04□□□□□ -0.48
USP39-215ENST00000481409 C9orf131Q5VYM1 1079 aa12.04□□□□□ -0.48
USP39-215ENST00000481409 MFSD6Q6ZSS7 791 aa12.04□□□□□ -0.48
USP39-215ENST00000481409 DHX32Q7L7V1 743 aaKnown RBP12.04□□□□□ -0.48
USP39-215ENST00000481409 RALYLQ86SE5 291 aaKnown RBP12.04□□□□□ -0.48
USP39-215ENST00000481409 TGFBRAP1Q8WUH2 860 aa12.04□□□□□ -0.48
USP39-215ENST00000481409 CHMP4CQ96CF2 233 aa12.04□□□□□ -0.48
USP39-215ENST00000481409 JAKMIP1Q96N16 626 aaKnown RBP12.04□□□□□ -0.48
USP39-215ENST00000481409 MYOZ2Q9NPC6 264 aa12.04□□□□□ -0.48
USP39-215ENST00000481409 MCM9Q9NXL9 1143 aa12.04□□□□□ -0.48
USP39-215ENST00000481409 FLT1P17948 1338 aa12.04□□□□□ -0.48
USP39-215ENST00000481409 USP17L12C9JPN9 530 aa12.03□□□□□ -0.48
USP39-215ENST00000481409 USP17L21D6R901 530 aa12.03□□□□□ -0.48
USP39-215ENST00000481409 ORC4O43929 436 aa12.03□□□□□ -0.48
USP39-215ENST00000481409 WDHD1O75717 1129 aaPredicted RBP12.03□□□□□ -0.48
USP39-215ENST00000481409 HLA-DOAP06340 250 aa12.03□□□□□ -0.48
USP39-215ENST00000481409 CASTP20810 708 aaKnown RBP12.03□□□□□ -0.48
USP39-215ENST00000481409 MCM5P33992 734 aa12.03□□□□□ -0.48
USP39-215ENST00000481409 TNNI2P48788 182 aa12.03□□□□□ -0.48
USP39-215ENST00000481409 GMPSP49915 693 aaPredicted RBP12.03□□□□□ -0.48
USP39-215ENST00000481409 SPDYE2Q495Y8 402 aa12.03□□□□□ -0.48
USP39-215ENST00000481409 CCDC178Q5BJE1 867 aa12.03□□□□□ -0.48
USP39-215ENST00000481409 FAM83AQ86UY5 434 aa12.03□□□□□ -0.48
USP39-215ENST00000481409 L3MBTL3Q96JM7 780 aaPredicted RBP12.03□□□□□ -0.48
USP39-215ENST00000481409 OSBPL5Q9H0X9 879 aaPredicted RBP12.03□□□□□ -0.48
USP39-215ENST00000481409 EHD4Q9H223 541 aa12.03□□□□□ -0.48
USP39-215ENST00000481409 GPRC5DQ9NZD1 345 aa12.03□□□□□ -0.48
USP39-215ENST00000481409 CNOT7Q9UIV1 285 aaKnown RBP12.03□□□□□ -0.48
USP39-215ENST00000481409 ZBTB12Q9Y330 459 aaPredicted RBP12.03□□□□□ -0.48
USP39-215ENST00000481409 GJA3Q9Y6H8 435 aa12.03□□□□□ -0.48
USP39-215ENST00000481409 ZNF541Q9H0D2 1346 aa12.03□□□□□ -0.48
USP39-215ENST00000481409 MYH1P12882 1939 aa12.03□□□□□ -0.48
USP39-215ENST00000481409 ATRNL1Q5VV63 1379 aa12.03□□□□□ -0.48
USP39-215ENST00000481409 BAZ2AQ9UIF9 1905 aaKnown RBP12.02□□□□□ -0.49
USP39-215ENST00000481409 ABCB7O75027 752 aa12.02□□□□□ -0.49
USP39-215ENST00000481409 POLR3DP05423 398 aaPredicted RBP12.02□□□□□ -0.49
USP39-215ENST00000481409 RPS6KB1P23443 525 aa12.02□□□□□ -0.49
USP39-215ENST00000481409 LMOD1P29536 600 aaPredicted RBP12.02□□□□□ -0.49
USP39-215ENST00000481409 NEK4P51957 841 aa12.02□□□□□ -0.49
USP39-215ENST00000481409 HSCBQ8IWL3 235 aa12.02□□□□□ -0.49
USP39-215ENST00000481409 MICALL2Q8IY33 904 aa12.02□□□□□ -0.49
USP39-215ENST00000481409 ESR2Q92731 530 aa12.02□□□□□ -0.49
USP39-215ENST00000481409 PRMT6Q96LA8 375 aaPredicted RBP12.02□□□□□ -0.49
USP39-215ENST00000481409 SWAP70Q9UH65 585 aa12.02□□□□□ -0.49
USP39-215ENST00000481409 MINDY4BA8MYZ0 360 aa12.01□□□□□ -0.49
USP39-215ENST00000481409 WNT10BO00744 389 aa12.01□□□□□ -0.49
USP39-215ENST00000481409 SART3Q15020 963 aaKnown RBP12.01□□□□□ -0.49
USP39-215ENST00000481409 ADCK5Q3MIX3 580 aa12.01□□□□□ -0.49
USP39-215ENST00000481409 PPP4R3BQ5MIZ7 849 aa12.01□□□□□ -0.49
USP39-215ENST00000481409 FOXP4Q8IVH2 680 aaPredicted RBP12.01□□□□□ -0.49
USP39-215ENST00000481409 MAPKAPK5Q8IW41 473 aa12.01□□□□□ -0.49
USP39-215ENST00000481409 TMTC2Q8N394 836 aa12.01□□□□□ -0.49
USP39-215ENST00000481409 FAM151AQ8WW52 585 aa12.01□□□□□ -0.49
USP39-215ENST00000481409 TMEM87BQ96K49 555 aa12.01□□□□□ -0.49
USP39-215ENST00000481409 ZSCAN31Q96LW9 406 aaPredicted RBP12.01□□□□□ -0.49
USP39-215ENST00000481409 TTC14Q96N46 770 aa12.01□□□□□ -0.49
USP39-215ENST00000481409 IPO9Q96P70 1041 aaKnown RBP12.01□□□□□ -0.49
USP39-215ENST00000481409 AGXT2Q9BYV1 514 aa12.01□□□□□ -0.49
USP39-215ENST00000481409 TDRD3Q9H7E2 651 aaKnown RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms