RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ZFYVE28Q9HCC9 887 aa23.19■■□□□ 1.3
CCDC88B-206ENST00000473405 ZCCHC17Q9NP64 241 aaKnown RBP23.19■■□□□ 1.3
CCDC88B-206ENST00000473405 DDX4Q9NQI0 724 aaKnown RBP23.19■■□□□ 1.3
CCDC88B-206ENST00000473405 MCAMP43121 646 aa23.18■■□□□ 1.3
CCDC88B-206ENST00000473405 GORABQ5T7V8 394 aa23.18■■□□□ 1.3
CCDC88B-206ENST00000473405 PTPN22Q9Y2R2 807 aa23.18■■□□□ 1.3
CCDC88B-206ENST00000473405 GPR75-ASB3A0A0A6YYF3 556 aa23.17■■□□□ 1.3
CCDC88B-206ENST00000473405 PHF20L1A8MW92 1017 aa23.17■■□□□ 1.3
CCDC88B-206ENST00000473405 RHBDL3P58872 404 aa23.17■■□□□ 1.3
CCDC88B-206ENST00000473405 TBC1D9Q6ZT07 1266 aa23.17■■□□□ 1.3
CCDC88B-206ENST00000473405 ERICH6Q7L0X2 663 aa23.17■■□□□ 1.3
CCDC88B-206ENST00000473405 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.17■■□□□ 1.3
CCDC88B-206ENST00000473405 NSUN4Q96CB9 384 aaKnown RBP23.17■■□□□ 1.3
CCDC88B-206ENST00000473405 EFCC1Q9HA90 598 aa23.17■■□□□ 1.3
CCDC88B-206ENST00000473405 KCNH4Q9UQ05 1017 aa23.17■■□□□ 1.3
CCDC88B-206ENST00000473405 FOCADQ5VW36 1801 aa23.17■■□□□ 1.3
CCDC88B-206ENST00000473405 DDTLA6NHG4 134 aaPredicted RBP23.16■■□□□ 1.3
CCDC88B-206ENST00000473405 ATP8B2P98198 1209 aa23.16■■□□□ 1.3
CCDC88B-206ENST00000473405 ITPRIPQ8IWB1 547 aa23.16■■□□□ 1.3
CCDC88B-206ENST00000473405 ATAD5Q96QE3 1844 aa23.16■■□□□ 1.3
CCDC88B-206ENST00000473405 KIAA0100Q14667 2235 aaKnown RBP23.15■■□□□ 1.3
CCDC88B-206ENST00000473405 ZBTB7BO15156 539 aaPredicted RBP23.15■■□□□ 1.3
CCDC88B-206ENST00000473405 TLR2O60603 784 aa23.15■■□□□ 1.3
CCDC88B-206ENST00000473405 SLURP2P0DP57 97 aa23.15■■□□□ 1.3
CCDC88B-206ENST00000473405 MAP3K10Q02779 954 aa23.15■■□□□ 1.3
CCDC88B-206ENST00000473405 MOGSQ13724 837 aa23.15■■□□□ 1.3
CCDC88B-206ENST00000473405 TNNI3KQ59H18 835 aa23.15■■□□□ 1.3
CCDC88B-206ENST00000473405 GPR108Q9NPR9 543 aa23.15■■□□□ 1.3
CCDC88B-206ENST00000473405 FPGT-TNNI3KV9GXZ4 949 aa23.15■■□□□ 1.3
CCDC88B-206ENST00000473405 SIPA1L1O43166 1804 aa23.15■■□□□ 1.3
CCDC88B-206ENST00000473405 COL2A1P02458 1487 aaPredicted RBP23.14■■□□□ 1.29
CCDC88B-206ENST00000473405 PICALMQ13492 652 aa23.14■■□□□ 1.29
CCDC88B-206ENST00000473405 UQCRFS1P1P0C7P4 283 aa23.13■■□□□ 1.29
CCDC88B-206ENST00000473405 DBNDD2Q9BQY9 259 aa23.13■■□□□ 1.29
CCDC88B-206ENST00000473405 ADGRA2Q96PE1 1338 aa23.12■■□□□ 1.29
CCDC88B-206ENST00000473405 SURF6O75683 361 aaKnown RBP23.12■■□□□ 1.29
CCDC88B-206ENST00000473405 GSTO1P78417 241 aa23.12■■□□□ 1.29
CCDC88B-206ENST00000473405 OS9Q13438 667 aaPredicted RBP23.12■■□□□ 1.29
CCDC88B-206ENST00000473405 ANKRD23Q86SG2 305 aa23.12■■□□□ 1.29
CCDC88B-206ENST00000473405 ZSCAN29Q8IWY8 852 aaPredicted RBP23.12■■□□□ 1.29
CCDC88B-206ENST00000473405 SCYL3Q8IZE3 742 aa23.12■■□□□ 1.29
CCDC88B-206ENST00000473405 ARHGAP39Q9C0H5 1083 aa23.12■■□□□ 1.29
CCDC88B-206ENST00000473405 NOP58Q9Y2X3 529 aaKnown RBP23.12■■□□□ 1.29
CCDC88B-206ENST00000473405 NPM3O75607 178 aaKnown RBP23.11■■□□□ 1.29
CCDC88B-206ENST00000473405 ARMC5Q96C12 935 aa23.11■■□□□ 1.29
CCDC88B-206ENST00000473405 RAI14Q9P0K7 980 aa23.11■■□□□ 1.29
CCDC88B-206ENST00000473405 PDHXO00330 501 aa23.1■■□□□ 1.29
CCDC88B-206ENST00000473405 LACTBP83111 547 aaPredicted RBP23.1■■□□□ 1.29
CCDC88B-206ENST00000473405 PANK1Q8TE04 598 aa23.1■■□□□ 1.29
CCDC88B-206ENST00000473405 SNRKQ9NRH2 765 aa23.1■■□□□ 1.29
CCDC88B-206ENST00000473405 MGAMO43451 1857 aa23.1■■□□□ 1.29
CCDC88B-206ENST00000473405 LOC285556D6RIA3 1793 aa23.09■■□□□ 1.29
CCDC88B-206ENST00000473405 MAP4K4O95819 1239 aaPredicted RBP23.09■■□□□ 1.29
CCDC88B-206ENST00000473405 LDHCP07864 332 aa23.09■■□□□ 1.29
CCDC88B-206ENST00000473405 PTPRAP18433 802 aa23.09■■□□□ 1.29
CCDC88B-206ENST00000473405 TTC39AQ5SRH9 613 aa23.09■■□□□ 1.29
CCDC88B-206ENST00000473405 CEP85Q6P2H3 762 aa23.09■■□□□ 1.29
CCDC88B-206ENST00000473405 C17orf99Q6UX52 265 aa23.09■■□□□ 1.29
CCDC88B-206ENST00000473405 TLR7Q9NYK1 1049 aaKnown RBP23.09■■□□□ 1.29
CCDC88B-206ENST00000473405 LRP2BPQ9P2M1 347 aa23.09■■□□□ 1.29
CCDC88B-206ENST00000473405 DBNLQ9UJU6 430 aaKnown RBP23.09■■□□□ 1.29
CCDC88B-206ENST00000473405 POTEFA5A3E0 1075 aa23.08■■□□□ 1.29
CCDC88B-206ENST00000473405 CXCL11O14625 94 aa23.08■■□□□ 1.29
CCDC88B-206ENST00000473405 CYP2E1P05181 493 aaPredicted RBP23.08■■□□□ 1.29
CCDC88B-206ENST00000473405 GPAT2Q6NUI2 795 aa23.08■■□□□ 1.29
CCDC88B-206ENST00000473405 ZNF512BQ96KM6 892 aaPredicted RBP23.08■■□□□ 1.29
CCDC88B-206ENST00000473405 PICK1Q9NRD5 415 aa23.08■■□□□ 1.29
CCDC88B-206ENST00000473405 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.08■■□□□ 1.29
CCDC88B-206ENST00000473405 PTCH2Q9Y6C5 1203 aa23.08■■□□□ 1.29
CCDC88B-206ENST00000473405 ZHX2Q9Y6X8 837 aa23.08■■□□□ 1.29
CCDC88B-206ENST00000473405 A0A0G2JLL6 359 aaPredicted RBP23.07■■□□□ 1.28
CCDC88B-206ENST00000473405 CTNND1O60716 968 aaKnown RBP23.07■■□□□ 1.28
CCDC88B-206ENST00000473405 ARHGEF6Q15052 776 aa23.07■■□□□ 1.28
CCDC88B-206ENST00000473405 CCDC158Q5M9N0 1113 aa23.07■■□□□ 1.28
CCDC88B-206ENST00000473405 PRRT2Q7Z6L0 340 aaPredicted RBP23.07■■□□□ 1.28
CCDC88B-206ENST00000473405 OSBPL5Q9H0X9 879 aaPredicted RBP23.07■■□□□ 1.28
CCDC88B-206ENST00000473405 CPA4Q9UI42 421 aa23.07■■□□□ 1.28
CCDC88B-206ENST00000473405 AFG3L2Q9Y4W6 797 aa23.07■■□□□ 1.28
CCDC88B-206ENST00000473405 FAM196BA6NMK8 535 aa23.06■■□□□ 1.28
CCDC88B-206ENST00000473405 TBC1D12O60347 775 aa23.06■■□□□ 1.28
CCDC88B-206ENST00000473405 CTGFP29279 349 aa23.06■■□□□ 1.28
CCDC88B-206ENST00000473405 ADGRA1Q86SQ6 560 aa23.06■■□□□ 1.28
CCDC88B-206ENST00000473405 SH3RF3Q8TEJ3 882 aaPredicted RBP23.06■■□□□ 1.28
CCDC88B-206ENST00000473405 EAF2Q96CJ1 260 aaPredicted RBP23.06■■□□□ 1.28
CCDC88B-206ENST00000473405 ZNF333Q96JL9 665 aa23.06■■□□□ 1.28
CCDC88B-206ENST00000473405 NAA16Q6N069 864 aaPredicted RBP23.05■■□□□ 1.28
CCDC88B-206ENST00000473405 TEX11Q8IYF3 940 aa23.05■■□□□ 1.28
CCDC88B-206ENST00000473405 ZAP70P43403 619 aa23.04■■□□□ 1.28
CCDC88B-206ENST00000473405 KIF22Q14807 665 aa23.04■■□□□ 1.28
CCDC88B-206ENST00000473405 CCDC84Q86UT8 332 aaPredicted RBP23.04■■□□□ 1.28
CCDC88B-206ENST00000473405 CCDC8Q9H0W5 538 aaPredicted RBP23.04■■□□□ 1.28
CCDC88B-206ENST00000473405 PIH1D3Q9NQM4 214 aaKnown RBP23.04■■□□□ 1.28
CCDC88B-206ENST00000473405 AATFQ9NY61 560 aaKnown RBP eCLIP23.04■■□□□ 1.28
CCDC88B-206ENST00000473405 CYP2C8P10632 490 aa23.03■■□□□ 1.28
CCDC88B-206ENST00000473405 SLC9C1Q4G0N8 1177 aa23.03■■□□□ 1.28
CCDC88B-206ENST00000473405 PARK7Q99497 189 aaKnown RBP23.03■■□□□ 1.28
CCDC88B-206ENST00000473405 EXOC6BQ9Y2D4 811 aa23.03■■□□□ 1.28
CCDC88B-206ENST00000473405 GNRH1P01148 92 aa23.02■■□□□ 1.28
CCDC88B-206ENST00000473405 FASTKD5Q7L8L6 764 aaKnown RBP23.02■■□□□ 1.28
CCDC88B-206ENST00000473405 TRIM47Q96LD4 638 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 116.3 ms