RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 RGS3P49796 1198 aa19.33■□□□□ 0.68
CCDC88B-205ENST00000472524 TTC39AQ5SRH9 613 aa19.33■□□□□ 0.68
CCDC88B-205ENST00000472524 DBNDD2Q9BQY9 259 aa19.33■□□□□ 0.68
CCDC88B-205ENST00000472524 GPR108Q9NPR9 543 aa19.33■□□□□ 0.68
CCDC88B-205ENST00000472524 PTCH2Q9Y6C5 1203 aa19.33■□□□□ 0.68
CCDC88B-205ENST00000472524 CDK5RAP2Q96SN8 1893 aa19.33■□□□□ 0.68
CCDC88B-205ENST00000472524 INPP5BP32019 993 aa19.32■□□□□ 0.68
CCDC88B-205ENST00000472524 SNAPC2Q13487 334 aa19.32■□□□□ 0.68
CCDC88B-205ENST00000472524 CEP85Q6P2H3 762 aa19.32■□□□□ 0.68
CCDC88B-205ENST00000472524 ZNF384Q8TF68 577 aa19.32■□□□□ 0.68
CCDC88B-205ENST00000472524 ZNF333Q96JL9 665 aa19.32■□□□□ 0.68
CCDC88B-205ENST00000472524 ARHGAP39Q9C0H5 1083 aa19.32■□□□□ 0.68
CCDC88B-205ENST00000472524 RAI14Q9P0K7 980 aa19.32■□□□□ 0.68
CCDC88B-205ENST00000472524 RFX7Q2KHR2 1363 aa19.32■□□□□ 0.68
CCDC88B-205ENST00000472524 DOCK1Q14185 1865 aa19.31■□□□□ 0.68
CCDC88B-205ENST00000472524 PPIL2Q13356 520 aa19.31■□□□□ 0.68
CCDC88B-205ENST00000472524 PICALMQ13492 652 aa19.31■□□□□ 0.68
CCDC88B-205ENST00000472524 ZSCAN29Q8IWY8 852 aaPredicted RBP19.31■□□□□ 0.68
CCDC88B-205ENST00000472524 FAM163AQ96GL9 167 aaPredicted RBP19.31■□□□□ 0.68
CCDC88B-205ENST00000472524 IDI2Q9BXS1 227 aa19.31■□□□□ 0.68
CCDC88B-205ENST00000472524 SNRKQ9NRH2 765 aa19.31■□□□□ 0.68
CCDC88B-205ENST00000472524 NOP58Q9Y2X3 529 aaKnown RBP19.31■□□□□ 0.68
CCDC88B-205ENST00000472524 TLR2O60603 784 aa19.3■□□□□ 0.68
CCDC88B-205ENST00000472524 ENTPD3O75355 529 aa19.3■□□□□ 0.68
CCDC88B-205ENST00000472524 WDHD1O75717 1129 aaPredicted RBP19.3■□□□□ 0.68
CCDC88B-205ENST00000472524 GSTO1P78417 241 aa19.3■□□□□ 0.68
CCDC88B-205ENST00000472524 CCDC158Q5M9N0 1113 aa19.3■□□□□ 0.68
CCDC88B-205ENST00000472524 NSUN4Q96CB9 384 aaKnown RBP19.3■□□□□ 0.68
CCDC88B-205ENST00000472524 DDX4Q9NQI0 724 aaKnown RBP19.3■□□□□ 0.68
CCDC88B-205ENST00000472524 PCDH10Q9P2E7 1040 aa19.3■□□□□ 0.68
CCDC88B-205ENST00000472524 LRP2BPQ9P2M1 347 aa19.3■□□□□ 0.68
CCDC88B-205ENST00000472524 MS4A1P11836 297 aa19.29■□□□□ 0.68
CCDC88B-205ENST00000472524 LACTBP83111 547 aaPredicted RBP19.29■□□□□ 0.68
CCDC88B-205ENST00000472524 ARHGEF6Q15052 776 aa19.29■□□□□ 0.68
CCDC88B-205ENST00000472524 SLC9C1Q4G0N8 1177 aa19.29■□□□□ 0.68
CCDC88B-205ENST00000472524 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.29■□□□□ 0.68
CCDC88B-205ENST00000472524 ZCCHC17Q9NP64 241 aaKnown RBP19.29■□□□□ 0.68
CCDC88B-205ENST00000472524 ZNF112Q9UJU3 913 aa19.29■□□□□ 0.68
CCDC88B-205ENST00000472524 ATAD5Q96QE3 1844 aa19.29■□□□□ 0.68
CCDC88B-205ENST00000472524 PTPRFP10586 1907 aa19.29■□□□□ 0.68
CCDC88B-205ENST00000472524 FOCADQ5VW36 1801 aa19.28■□□□□ 0.68
CCDC88B-205ENST00000472524 GPR75-ASB3A0A0A6YYF3 556 aa19.28■□□□□ 0.68
CCDC88B-205ENST00000472524 ECM2O94769 699 aaPredicted RBP19.28■□□□□ 0.68
CCDC88B-205ENST00000472524 MYCP01106 439 aaPredicted RBP19.28■□□□□ 0.68
CCDC88B-205ENST00000472524 LDHCP07864 332 aa19.28■□□□□ 0.68
CCDC88B-205ENST00000472524 RHBDL3P58872 404 aa19.28■□□□□ 0.68
CCDC88B-205ENST00000472524 PPATQ06203 517 aa19.28■□□□□ 0.68
CCDC88B-205ENST00000472524 SH3BP5LQ7L8J4 393 aa19.28■□□□□ 0.68
CCDC88B-205ENST00000472524 TMEM106CQ9BVX2 250 aa19.28■□□□□ 0.68
CCDC88B-205ENST00000472524 CCDC8Q9H0W5 538 aaPredicted RBP19.28■□□□□ 0.68
CCDC88B-205ENST00000472524 TLR7Q9NYK1 1049 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-205ENST00000472524 EXOC6BQ9Y2D4 811 aa19.28■□□□□ 0.68
CCDC88B-205ENST00000472524 ATRNL1Q5VV63 1379 aa19.28■□□□□ 0.68
CCDC88B-205ENST00000472524 PHIPQ8WWQ0 1821 aa19.28■□□□□ 0.68
CCDC88B-205ENST00000472524 DDTLA6NHG4 134 aaPredicted RBP19.27■□□□□ 0.68
CCDC88B-205ENST00000472524 SH3TC2Q8TF17 1288 aa19.27■□□□□ 0.68
CCDC88B-205ENST00000472524 DBNLQ9UJU6 430 aaKnown RBP19.27■□□□□ 0.68
CCDC88B-205ENST00000472524 RCAN3Q9UKA8 241 aa19.27■□□□□ 0.68
CCDC88B-205ENST00000472524 COG6Q9Y2V7 657 aa19.27■□□□□ 0.68
CCDC88B-205ENST00000472524 ZSWIM8A7E2V4 1837 aa19.27■□□□□ 0.68
CCDC88B-205ENST00000472524 SLURP2P0DP57 97 aa19.26■□□□□ 0.67
CCDC88B-205ENST00000472524 NOL9Q5SY16 702 aaKnown RBP19.26■□□□□ 0.67
CCDC88B-205ENST00000472524 NBPF11Q86T75 865 aa19.26■□□□□ 0.67
CCDC88B-205ENST00000472524 CPA4Q9UI42 421 aa19.26■□□□□ 0.67
CCDC88B-205ENST00000472524 PDHXO00330 501 aa19.25■□□□□ 0.67
CCDC88B-205ENST00000472524 CYP2E1P05181 493 aaPredicted RBP19.25■□□□□ 0.67
CCDC88B-205ENST00000472524 CTGFP29279 349 aa19.25■□□□□ 0.67
CCDC88B-205ENST00000472524 ZAP70P43403 619 aa19.25■□□□□ 0.67
CCDC88B-205ENST00000472524 MOGSQ13724 837 aa19.25■□□□□ 0.67
CCDC88B-205ENST00000472524 KIF22Q14807 665 aa19.25■□□□□ 0.67
CCDC88B-205ENST00000472524 SLC4A8Q2Y0W8 1093 aa19.25■□□□□ 0.67
CCDC88B-205ENST00000472524 NAA16Q6N069 864 aaPredicted RBP19.25■□□□□ 0.67
CCDC88B-205ENST00000472524 C17orf99Q6UX52 265 aa19.25■□□□□ 0.67
CCDC88B-205ENST00000472524 EAF2Q96CJ1 260 aaPredicted RBP19.25■□□□□ 0.67
CCDC88B-205ENST00000472524 NOL10Q9BSC4 688 aaKnown RBP19.25■□□□□ 0.67
CCDC88B-205ENST00000472524 DDX19BQ9UMR2 479 aa19.25■□□□□ 0.67
CCDC88B-205ENST00000472524 KCNH4Q9UQ05 1017 aa19.25■□□□□ 0.67
CCDC88B-205ENST00000472524 ANKRD23Q86SG2 305 aa19.24■□□□□ 0.67
CCDC88B-205ENST00000472524 ERC1Q8IUD2 1116 aa19.24■□□□□ 0.67
CCDC88B-205ENST00000472524 TEX11Q8IYF3 940 aa19.24■□□□□ 0.67
CCDC88B-205ENST00000472524 MYH1P12882 1939 aa19.23■□□□□ 0.67
CCDC88B-205ENST00000472524 SIPA1L1O43166 1804 aa19.23■□□□□ 0.67
CCDC88B-205ENST00000472524 PHF20L1A8MW92 1017 aa19.23■□□□□ 0.67
CCDC88B-205ENST00000472524 AACSQ86V21 672 aa19.23■□□□□ 0.67
CCDC88B-205ENST00000472524 SCYL3Q8IZE3 742 aa19.23■□□□□ 0.67
CCDC88B-205ENST00000472524 SH3RF3Q8TEJ3 882 aaPredicted RBP19.23■□□□□ 0.67
CCDC88B-205ENST00000472524 GCC1Q96CN9 775 aa19.23■□□□□ 0.67
CCDC88B-205ENST00000472524 ZNF512BQ96KM6 892 aaPredicted RBP19.23■□□□□ 0.67
CCDC88B-205ENST00000472524 PICK1Q9NRD5 415 aa19.23■□□□□ 0.67
CCDC88B-205ENST00000472524 AATFQ9NY61 560 aaKnown RBP eCLIP19.23■□□□□ 0.67
CCDC88B-205ENST00000472524 ADGRA2Q96PE1 1338 aa19.23■□□□□ 0.67
CCDC88B-205ENST00000472524 FAM196BA6NMK8 535 aa19.22■□□□□ 0.67
CCDC88B-205ENST00000472524 APBB1O00213 710 aa19.22■□□□□ 0.67
CCDC88B-205ENST00000472524 MAP4K4O95819 1239 aaPredicted RBP19.22■□□□□ 0.67
CCDC88B-205ENST00000472524 HABP4Q5JVS0 413 aaKnown RBP19.22■□□□□ 0.67
CCDC88B-205ENST00000472524 TRIM47Q96LD4 638 aa19.22■□□□□ 0.67
CCDC88B-205ENST00000472524 OSBPL5Q9H0X9 879 aaPredicted RBP19.22■□□□□ 0.67
CCDC88B-205ENST00000472524 IL1RAPL2Q9NP60 686 aa19.22■□□□□ 0.67
CCDC88B-205ENST00000472524 PIH1D3Q9NQM4 214 aaKnown RBP19.22■□□□□ 0.67
CCDC88B-205ENST00000472524 NPM3O75607 178 aaKnown RBP19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms