RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 C12orf60Q5U649 245 aa11.87□□□□□ -0.51
SF3A1-207ENST00000471342 GIMAP6Q6P9H5 292 aa11.87□□□□□ -0.51
SF3A1-207ENST00000471342 TGFBRAP1Q8WUH2 860 aa11.87□□□□□ -0.51
SF3A1-207ENST00000471342 ANAPC4Q9UJX5 808 aa11.87□□□□□ -0.51
SF3A1-207ENST00000471342 SNX14Q9Y5W7 946 aa11.87□□□□□ -0.51
SF3A1-207ENST00000471342 SLC4A4Q9Y6R1 1079 aa11.87□□□□□ -0.51
SF3A1-207ENST00000471342 SIPA1L1O43166 1804 aa11.87□□□□□ -0.51
SF3A1-207ENST00000471342 SSC5DA1L4H1 1573 aa11.87□□□□□ -0.51
SF3A1-207ENST00000471342 CLRN2A0PK11 232 aa11.86□□□□□ -0.51
SF3A1-207ENST00000471342 MFAP1P55081 439 aaKnown RBP11.86□□□□□ -0.51
SF3A1-207ENST00000471342 KIF4BQ2VIQ3 1234 aa11.86□□□□□ -0.51
SF3A1-207ENST00000471342 FKBP1CQ5VVH2 108 aa11.86□□□□□ -0.51
SF3A1-207ENST00000471342 CREB3L3Q68CJ9 461 aa11.86□□□□□ -0.51
SF3A1-207ENST00000471342 MAPKAPK5Q8IW41 473 aa11.86□□□□□ -0.51
SF3A1-207ENST00000471342 RUFY2Q8WXA3 655 aa11.86□□□□□ -0.51
SF3A1-207ENST00000471342 AIDAQ96BJ3 306 aa11.86□□□□□ -0.51
SF3A1-207ENST00000471342 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.86□□□□□ -0.51
SF3A1-207ENST00000471342 OSBPL5Q9H0X9 879 aaPredicted RBP11.86□□□□□ -0.51
SF3A1-207ENST00000471342 TSHZ2Q9NRE2 1034 aa11.86□□□□□ -0.51
SF3A1-207ENST00000471342 ATP8A2Q9NTI2 1148 aa11.86□□□□□ -0.51
SF3A1-207ENST00000471342 CDK5RAP2Q96SN8 1893 aa11.85□□□□□ -0.51
SF3A1-207ENST00000471342 COL2A1P02458 1487 aaPredicted RBP11.85□□□□□ -0.51
SF3A1-207ENST00000471342 ROBO3Q96MS0 1386 aa11.85□□□□□ -0.51
SF3A1-207ENST00000471342 USP17L12C9JPN9 530 aa11.85□□□□□ -0.51
SF3A1-207ENST00000471342 USP17L21D6R901 530 aa11.85□□□□□ -0.51
SF3A1-207ENST00000471342 DLGAP5Q15398 846 aa11.85□□□□□ -0.51
SF3A1-207ENST00000471342 SHROOM1Q2M3G4 852 aaPredicted RBP11.85□□□□□ -0.51
SF3A1-207ENST00000471342 NMRK2Q9NPI5 230 aa11.85□□□□□ -0.51
SF3A1-207ENST00000471342 ANO2Q9NQ90 1003 aa11.85□□□□□ -0.51
SF3A1-207ENST00000471342 AK9Q5TCS8 1911 aa11.84□□□□□ -0.51
SF3A1-207ENST00000471342 ENTPD3O75355 529 aa11.84□□□□□ -0.51
SF3A1-207ENST00000471342 BAG3O95817 575 aa11.84□□□□□ -0.51
SF3A1-207ENST00000471342 NOVP48745 357 aa11.84□□□□□ -0.51
SF3A1-207ENST00000471342 LRRFIP1Q32MZ4 808 aaKnown RBP11.84□□□□□ -0.51
SF3A1-207ENST00000471342 SLF2Q8IX21 1173 aa11.84□□□□□ -0.51
SF3A1-207ENST00000471342 TEX11Q8IYF3 940 aa11.84□□□□□ -0.51
SF3A1-207ENST00000471342 ADARB2Q9NS39 739 aaKnown RBP11.84□□□□□ -0.51
SF3A1-207ENST00000471342 HACL1Q9UJ83 578 aa11.84□□□□□ -0.51
SF3A1-207ENST00000471342 FOCADQ5VW36 1801 aa11.83□□□□□ -0.51
SF3A1-207ENST00000471342 KIF3CO14782 793 aa11.83□□□□□ -0.52
SF3A1-207ENST00000471342 CD2BP2O95400 341 aaKnown RBP11.83□□□□□ -0.52
SF3A1-207ENST00000471342 GNAT2P19087 354 aa11.83□□□□□ -0.52
SF3A1-207ENST00000471342 EPHX2P34913 555 aa11.83□□□□□ -0.52
SF3A1-207ENST00000471342 ANTXR2P58335 489 aa11.83□□□□□ -0.52
SF3A1-207ENST00000471342 EXOSC10Q01780 885 aaKnown RBP11.83□□□□□ -0.52
SF3A1-207ENST00000471342 FMR1Q06787 632 aaKnown RBP eCLIP11.83□□□□□ -0.522e-9■□□□□ 10.5
SF3A1-207ENST00000471342 RBM26Q5T8P6 1007 aaKnown RBP11.83□□□□□ -0.52
SF3A1-207ENST00000471342 ANGEL2Q5VTE6 544 aaKnown RBP11.83□□□□□ -0.52
SF3A1-207ENST00000471342 FAM83AQ86UY5 434 aa11.83□□□□□ -0.52
SF3A1-207ENST00000471342 SIAH1Q8IUQ4 282 aa11.83□□□□□ -0.52
SF3A1-207ENST00000471342 SLC44A5Q8NCS7 719 aa11.83□□□□□ -0.52
SF3A1-207ENST00000471342 FAM151AQ8WW52 585 aa11.83□□□□□ -0.52
SF3A1-207ENST00000471342 DYNLL2Q96FJ2 89 aa11.83□□□□□ -0.52
SF3A1-207ENST00000471342 CRNKL1Q9BZJ0 848 aaKnown RBP11.83□□□□□ -0.52
SF3A1-207ENST00000471342 TMEM39BQ9GZU3 492 aa11.83□□□□□ -0.52
SF3A1-207ENST00000471342 U3KPZ7 1027 aaPredicted RBP11.83□□□□□ -0.52
SF3A1-207ENST00000471342 PHF20L1A8MW92 1017 aa11.82□□□□□ -0.52
SF3A1-207ENST00000471342 TCP10L2B9ZVM9 353 aa11.82□□□□□ -0.52
SF3A1-207ENST00000471342 H7C1D1 291 aa11.82□□□□□ -0.52
SF3A1-207ENST00000471342 GUCY1A2P33402 732 aa11.82□□□□□ -0.52
SF3A1-207ENST00000471342 SHMT1P34896 483 aa11.82□□□□□ -0.52
SF3A1-207ENST00000471342 HAND2P61296 217 aa11.82□□□□□ -0.52
SF3A1-207ENST00000471342 CTDSPL2Q05D32 466 aa11.82□□□□□ -0.52
SF3A1-207ENST00000471342 PPARAQ07869 468 aa11.82□□□□□ -0.52
SF3A1-207ENST00000471342 RASA3Q14644 834 aa11.82□□□□□ -0.52
SF3A1-207ENST00000471342 PRAMEF18Q5VWM3 479 aa11.82□□□□□ -0.52
SF3A1-207ENST00000471342 DPY19L2Q6NUT2 758 aa11.82□□□□□ -0.52
SF3A1-207ENST00000471342 USP50Q70EL3 339 aaPredicted RBP11.82□□□□□ -0.52
SF3A1-207ENST00000471342 MB21D2Q8IYB1 491 aaPredicted RBP11.82□□□□□ -0.52
SF3A1-207ENST00000471342 OGFOD1Q8N543 542 aa11.82□□□□□ -0.52
SF3A1-207ENST00000471342 TTC14Q96N46 770 aa11.82□□□□□ -0.52
SF3A1-207ENST00000471342 C22orf23Q9BZE7 217 aa11.82□□□□□ -0.52
SF3A1-207ENST00000471342 RRAGCQ9HB90 399 aa11.82□□□□□ -0.52
SF3A1-207ENST00000471342 SAP30BPQ9UHR5 308 aaKnown RBP11.82□□□□□ -0.52
SF3A1-207ENST00000471342 HDAC9Q9UKV0 1011 aa11.82□□□□□ -0.52
SF3A1-207ENST00000471342 NEDD4P46934 1319 aa11.82□□□□□ -0.52
SF3A1-207ENST00000471342 PITPNM2Q9BZ72 1349 aa11.82□□□□□ -0.52
SF3A1-207ENST00000471342 IGKV6D-41A0A0C4DH26 115 aa11.81□□□□□ -0.52
SF3A1-207ENST00000471342 E7EWF7 191 aa11.81□□□□□ -0.52
SF3A1-207ENST00000471342 REC8O95072 547 aa11.81□□□□□ -0.52
SF3A1-207ENST00000471342 CPA1P15085 419 aa11.81□□□□□ -0.52
SF3A1-207ENST00000471342 PLCG2P16885 1265 aa11.81□□□□□ -0.52
SF3A1-207ENST00000471342 TCP10Q12799 353 aa11.81□□□□□ -0.52
SF3A1-207ENST00000471342 NBPF12Q5TAG4 269 aaPredicted RBP11.81□□□□□ -0.52
SF3A1-207ENST00000471342 TATDN1Q6P1N9 297 aa11.81□□□□□ -0.52
SF3A1-207ENST00000471342 C16orf86Q6ZW13 317 aa11.81□□□□□ -0.52
SF3A1-207ENST00000471342 CYB5R4Q7L1T6 521 aa11.81□□□□□ -0.52
SF3A1-207ENST00000471342 CERS3Q8IU89 383 aa11.81□□□□□ -0.52
SF3A1-207ENST00000471342 ZC3H15Q8WU90 426 aaKnown RBP11.81□□□□□ -0.52
SF3A1-207ENST00000471342 STAG1Q8WVM7 1258 aa11.81□□□□□ -0.52
SF3A1-207ENST00000471342 EHD4Q9H223 541 aa11.81□□□□□ -0.52
SF3A1-207ENST00000471342 ZSWIM6Q9HCJ5 1215 aa11.81□□□□□ -0.52
SF3A1-207ENST00000471342 GPHNQ9NQX3 736 aaPredicted RBP11.81□□□□□ -0.52
SF3A1-207ENST00000471342 GGA3Q9NZ52 723 aa11.81□□□□□ -0.52
SF3A1-207ENST00000471342 FAM196BA6NMK8 535 aa11.8□□□□□ -0.52
SF3A1-207ENST00000471342 ADM5C9JUS6 153 aa11.8□□□□□ -0.52
SF3A1-207ENST00000471342 ORC4O43929 436 aa11.8□□□□□ -0.52
SF3A1-207ENST00000471342 TBC1D12O60347 775 aa11.8□□□□□ -0.52
SF3A1-207ENST00000471342 ITGBL1O95965 494 aaPredicted RBP11.8□□□□□ -0.52
SF3A1-207ENST00000471342 RASA1P20936 1047 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms