RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 MECOMQ03112 1051 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 TXNRD1Q16881 649 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 TMEM67Q5HYA8 995 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 SYNE3Q6ZMZ3 975 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 ZNF804AQ7Z570 1209 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 ADGRA1Q86SQ6 560 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 NLGN1Q8N2Q7 840 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 ZNF384Q8TF68 577 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 WASF1Q92558 559 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 RPGRQ92834 1020 aaKnown RBP8.89□□□□□ -0.99
COL6A3-208ENST00000468792 DDX11Q96FC9 970 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 FAM163AQ96GL9 167 aaPredicted RBP8.89□□□□□ -0.99
COL6A3-208ENST00000468792 PDLIM2Q96JY6 352 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 C8orf76Q96K31 380 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 FUCA2Q9BTY2 467 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 CRNKL1Q9BZJ0 848 aaKnown RBP8.89□□□□□ -0.99
COL6A3-208ENST00000468792 RBSNQ9H1K0 784 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 TSPY26PQ9H489 355 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 NCOA5Q9HCD5 579 aaKnown RBP8.89□□□□□ -0.99
COL6A3-208ENST00000468792 RTEL1Q9NZ71 1219 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 ORC3Q9UBD5 711 aaPredicted RBP8.89□□□□□ -0.99
COL6A3-208ENST00000468792 RGPD3A6NKT7 1758 aaPredicted RBP8.89□□□□□ -0.99
COL6A3-208ENST00000468792 RGPD4Q7Z3J3 1758 aa8.89□□□□□ -0.99
COL6A3-208ENST00000468792 NRXN2Q9P2S2 1712 aa8.88□□□□□ -0.99
COL6A3-208ENST00000468792 MYH13Q9UKX3 1938 aa8.88□□□□□ -0.99
COL6A3-208ENST00000468792 CCDC88AQ3V6T2 1871 aa8.88□□□□□ -0.99
COL6A3-208ENST00000468792 ERICH2A1L162 156 aa8.88□□□□□ -0.99
COL6A3-208ENST00000468792 GOLGA6L4A6NEF3 574 aa8.88□□□□□ -0.99
COL6A3-208ENST00000468792 IFIT3O14879 490 aaKnown RBP8.88□□□□□ -0.99
COL6A3-208ENST00000468792 NPHP1O15259 732 aa8.88□□□□□ -0.99
COL6A3-208ENST00000468792 PRKAB2O43741 272 aa8.88□□□□□ -0.99
COL6A3-208ENST00000468792 KDM4AO75164 1064 aa8.88□□□□□ -0.99
COL6A3-208ENST00000468792 ECM2O94769 699 aaPredicted RBP8.88□□□□□ -0.99
COL6A3-208ENST00000468792 YEATS4O95619 227 aa8.88□□□□□ -0.99
COL6A3-208ENST00000468792 LDHCP07864 332 aa8.88□□□□□ -0.99
COL6A3-208ENST00000468792 SLC3A2P08195 630 aaKnown RBP8.88□□□□□ -0.99
COL6A3-208ENST00000468792 SEC23AQ15436 765 aa8.88□□□□□ -0.99
COL6A3-208ENST00000468792 SMIM5Q71RC9 77 aa8.88□□□□□ -0.99
COL6A3-208ENST00000468792 FERMT3Q86UX7 667 aa8.88□□□□□ -0.99
COL6A3-208ENST00000468792 SP8Q8IXZ3 490 aa8.88□□□□□ -0.99
COL6A3-208ENST00000468792 FAM43AQ8N2R8 423 aa8.88□□□□□ -0.99
COL6A3-208ENST00000468792 AKT1S1Q96B36 256 aa8.88□□□□□ -0.99
COL6A3-208ENST00000468792 PANK2Q9BZ23 570 aa8.88□□□□□ -0.99
COL6A3-208ENST00000468792 GPHNQ9NQX3 736 aaPredicted RBP8.88□□□□□ -0.99
COL6A3-208ENST00000468792 FAM217BQ9NTX9 383 aaPredicted RBP8.88□□□□□ -0.99
COL6A3-208ENST00000468792 POLR3EQ9NVU0 708 aa8.88□□□□□ -0.99
COL6A3-208ENST00000468792 ARPP21Q9UBL0 812 aaPredicted RBP8.88□□□□□ -0.99
COL6A3-208ENST00000468792 SUGT1Q9Y2Z0 365 aa8.88□□□□□ -0.99
COL6A3-208ENST00000468792 SLC12A7Q9Y666 1083 aa8.88□□□□□ -0.99
COL6A3-208ENST00000468792 MORC2Q9Y6X9 1032 aaPredicted RBP8.88□□□□□ -0.99
COL6A3-208ENST00000468792 LRRC37AA6NMS7 1700 aa8.88□□□□□ -0.99
COL6A3-208ENST00000468792 MYH15Q9Y2K3 1946 aa8.88□□□□□ -0.99
COL6A3-208ENST00000468792 A0A1W2PQ27 194 aa8.87□□□□□ -0.99
COL6A3-208ENST00000468792 A0A1W2PQ64 194 aa8.87□□□□□ -0.99
COL6A3-208ENST00000468792 A0A1W2PQD8 194 aa8.87□□□□□ -0.99
COL6A3-208ENST00000468792 CCDC69A6NI79 296 aa8.87□□□□□ -0.99
COL6A3-208ENST00000468792 WTIPA6NIX2 430 aaPredicted RBP8.87□□□□□ -0.99
COL6A3-208ENST00000468792 CTAGE5O15320 804 aa8.87□□□□□ -0.99
COL6A3-208ENST00000468792 TRIM37O94972 964 aa8.87□□□□□ -0.99
COL6A3-208ENST00000468792 FMNL1O95466 1100 aaPredicted RBP8.87□□□□□ -0.99
COL6A3-208ENST00000468792 CALM1P0DP23 149 aa8.87□□□□□ -0.99
COL6A3-208ENST00000468792 CALM2P0DP24 149 aa8.87□□□□□ -0.99
COL6A3-208ENST00000468792 CALM3P0DP25 149 aa8.87□□□□□ -0.99
COL6A3-208ENST00000468792 U2AF2P26368 475 aaKnown RBP eCLIP8.87□□□□□ -0.99
COL6A3-208ENST00000468792 CTDSPL2Q05D32 466 aa8.87□□□□□ -0.99
COL6A3-208ENST00000468792 WTAPQ15007 396 aa8.87□□□□□ -0.99
COL6A3-208ENST00000468792 FOXD4L6Q3SYB3 417 aaPredicted RBP8.87□□□□□ -0.99
COL6A3-208ENST00000468792 CCDC178Q5BJE1 867 aa8.87□□□□□ -0.99
COL6A3-208ENST00000468792 CTR9Q6PD62 1173 aa8.87□□□□□ -0.99
COL6A3-208ENST00000468792 FOXD4L3Q6VB84 417 aaPredicted RBP8.87□□□□□ -0.99
COL6A3-208ENST00000468792 MIGA1Q8NAN2 632 aa8.87□□□□□ -0.99
COL6A3-208ENST00000468792 KCNG4Q8TDN1 519 aa8.87□□□□□ -0.99
COL6A3-208ENST00000468792 TBC1D22AQ8WUA7 517 aa8.87□□□□□ -0.99
COL6A3-208ENST00000468792 ANKS1AQ92625 1134 aa8.87□□□□□ -0.99
COL6A3-208ENST00000468792 MAP3K14Q99558 947 aa8.87□□□□□ -0.99
COL6A3-208ENST00000468792 DCP1AQ9NPI6 582 aaPredicted RBP8.87□□□□□ -0.99
COL6A3-208ENST00000468792 ANKIB1Q9P2G1 1089 aa8.87□□□□□ -0.99
COL6A3-208ENST00000468792 MKRN1Q9UHC7 482 aaKnown RBP8.87□□□□□ -0.99
COL6A3-208ENST00000468792 GGA1Q9UJY5 639 aa8.87□□□□□ -0.99
COL6A3-208ENST00000468792 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.87□□□□□ -0.99
COL6A3-208ENST00000468792 TACC3Q9Y6A5 838 aa8.87□□□□□ -0.99
COL6A3-208ENST00000468792 ROBO3Q96MS0 1386 aa8.86□□□□□ -0.99
COL6A3-208ENST00000468792 FAM205AQ6ZU69 1335 aa8.86□□□□□ -0.99
COL6A3-208ENST00000468792 LTBP1Q14766 1721 aa8.86□□□□□ -0.99
COL6A3-208ENST00000468792 GOLGA8AA7E2F4 631 aa8.86□□□□□ -0.99
COL6A3-208ENST00000468792 BAG3O95817 575 aa8.86□□□□□ -0.99
COL6A3-208ENST00000468792 LDHBP07195 334 aaKnown RBP8.86□□□□□ -0.99
COL6A3-208ENST00000468792 KLRK1P26718 216 aa8.86□□□□□ -0.99
COL6A3-208ENST00000468792 CDC27P30260 824 aa8.86□□□□□ -0.99
COL6A3-208ENST00000468792 IARSP41252 1262 aaKnown RBP8.86□□□□□ -0.99
COL6A3-208ENST00000468792 KIF23Q02241 960 aaPredicted RBP8.86□□□□□ -0.99
COL6A3-208ENST00000468792 DDR1Q08345 913 aa8.86□□□□□ -0.99
COL6A3-208ENST00000468792 ADALQ6DHV7 355 aa8.86□□□□□ -0.99
COL6A3-208ENST00000468792 NFXL1Q6ZNB6 911 aa8.86□□□□□ -0.99
COL6A3-208ENST00000468792 ILDR1Q86SU0 546 aaPredicted RBP8.86□□□□□ -0.99
COL6A3-208ENST00000468792 TXNRD3Q86VQ6 643 aa8.86□□□□□ -0.99
COL6A3-208ENST00000468792 IQCA1Q86XH1 822 aa8.86□□□□□ -0.99
COL6A3-208ENST00000468792 SLF2Q8IX21 1173 aa8.86□□□□□ -0.99
COL6A3-208ENST00000468792 FAM177A1Q8N128 213 aaPredicted RBP8.86□□□□□ -0.99
COL6A3-208ENST00000468792 PGBD1Q96JS3 809 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms