RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 ZDHHC9Q9Y397 364 aa22.33■■□□□ 1.17
SMC4-209ENST00000468653 GAKO14976 1311 aa22.33■■□□□ 1.16
SMC4-209ENST00000468653 MCM4P33991 863 aa22.33■■□□□ 1.16
SMC4-209ENST00000468653 SCRN1Q12765 414 aa22.33■■□□□ 1.16
SMC4-209ENST00000468653 SBK1Q52WX2 424 aa22.33■■□□□ 1.16
SMC4-209ENST00000468653 STRIP1Q5VSL9 837 aa22.33■■□□□ 1.16
SMC4-209ENST00000468653 CHMP4CQ96CF2 233 aa22.33■■□□□ 1.16
SMC4-209ENST00000468653 PPP1R1BQ9UD71 204 aaPredicted RBP22.33■■□□□ 1.16
SMC4-209ENST00000468653 BAZ2AQ9UIF9 1905 aaKnown RBP22.32■■□□□ 1.16
SMC4-209ENST00000468653 KLF18A0A0U1RQI7 1052 aa22.32■■□□□ 1.16
SMC4-209ENST00000468653 SH2B2O14492 632 aaPredicted RBP22.32■■□□□ 1.16
SMC4-209ENST00000468653 SLC3A2P08195 630 aaKnown RBP22.32■■□□□ 1.16
SMC4-209ENST00000468653 PCP11498 1178 aaKnown RBP22.32■■□□□ 1.16
SMC4-209ENST00000468653 TGFBRAP1Q8WUH2 860 aa22.32■■□□□ 1.16
SMC4-209ENST00000468653 KCNQ5Q9NR82 932 aa22.32■■□□□ 1.16
SMC4-209ENST00000468653 WDR33Q9C0J8 1336 aaKnown RBP22.31■■□□□ 1.16
SMC4-209ENST00000468653 PSDA5PKW4 1024 aaPredicted RBP22.31■■□□□ 1.16
SMC4-209ENST00000468653 DTNBO60941 627 aa22.31■■□□□ 1.16
SMC4-209ENST00000468653 BRD1O95696 1058 aa22.31■■□□□ 1.16
SMC4-209ENST00000468653 CCT2P78371 535 aaKnown RBP22.31■■□□□ 1.16
SMC4-209ENST00000468653 TMEM67Q5HYA8 995 aa22.31■■□□□ 1.16
SMC4-209ENST00000468653 SOGA3Q5TF21 947 aa22.31■■□□□ 1.16
SMC4-209ENST00000468653 FOXD4L5Q5VV16 416 aaPredicted RBP22.31■■□□□ 1.16
SMC4-209ENST00000468653 AMOTL1Q8IY63 956 aa22.31■■□□□ 1.16
SMC4-209ENST00000468653 TEX11Q8IYF3 940 aa22.31■■□□□ 1.16
SMC4-209ENST00000468653 FOXD4L4Q8WXT5 416 aaPredicted RBP22.31■■□□□ 1.16
SMC4-209ENST00000468653 ESR2Q92731 530 aa22.31■■□□□ 1.16
SMC4-209ENST00000468653 PSMD1Q99460 953 aa22.31■■□□□ 1.16
SMC4-209ENST00000468653 DAGLAQ9Y4D2 1042 aa22.31■■□□□ 1.16
SMC4-209ENST00000468653 USP17L3A6NCW0 530 aa22.3■■□□□ 1.16
SMC4-209ENST00000468653 USP17L4A6NCW7 530 aa22.3■■□□□ 1.16
SMC4-209ENST00000468653 IFIT3O14879 490 aaKnown RBP22.3■■□□□ 1.16
SMC4-209ENST00000468653 SART3Q15020 963 aaKnown RBP22.3■■□□□ 1.16
SMC4-209ENST00000468653 USP17L1Q7RTZ2 530 aa22.3■■□□□ 1.16
SMC4-209ENST00000468653 MKRN1Q9UHC7 482 aaKnown RBP22.3■■□□□ 1.16
SMC4-209ENST00000468653 BRPF3Q9ULD4 1205 aa22.3■■□□□ 1.16
SMC4-209ENST00000468653 SMIM22K7EJ46 135 aa22.3■■□□□ 1.16
SMC4-209ENST00000468653 CYP2D6P10635 497 aa22.3■■□□□ 1.16
SMC4-209ENST00000468653 SYT1P21579 422 aa22.3■■□□□ 1.16
SMC4-209ENST00000468653 FKBP1AP62942 108 aaKnown RBP22.3■■□□□ 1.16
SMC4-209ENST00000468653 KLHL34Q8N239 644 aa22.3■■□□□ 1.16
SMC4-209ENST00000468653 IGDCC4Q8TDY8 1250 aa22.3■■□□□ 1.16
SMC4-209ENST00000468653 LLPHQ9BRT6 129 aaKnown RBP22.3■■□□□ 1.16
SMC4-209ENST00000468653 GOLGA8BA8MQT2 603 aa22.29■■□□□ 1.16
SMC4-209ENST00000468653 USP17L8P0C7I0 530 aa22.29■■□□□ 1.16
SMC4-209ENST00000468653 SCNN1DP51172 638 aa22.29■■□□□ 1.16
SMC4-209ENST00000468653 NFXL1Q6ZNB6 911 aa22.29■■□□□ 1.16
SMC4-209ENST00000468653 MAPKAPK5Q8IW41 473 aa22.29■■□□□ 1.16
SMC4-209ENST00000468653 ERICH2A1L162 156 aa22.28■■□□□ 1.16
SMC4-209ENST00000468653 STX6O43752 255 aa22.28■■□□□ 1.16
SMC4-209ENST00000468653 RHBDL3P58872 404 aa22.28■■□□□ 1.16
SMC4-209ENST00000468653 DALRD3Q5D0E6 543 aaKnown RBP22.28■■□□□ 1.16
SMC4-209ENST00000468653 DACT2Q5SW24 774 aa22.28■■□□□ 1.16
SMC4-209ENST00000468653 CLEC17AQ6ZS10 378 aa22.28■■□□□ 1.16
SMC4-209ENST00000468653 MTA3Q9BTC8 594 aa22.28■■□□□ 1.16
SMC4-209ENST00000468653 NCOA5Q9HCD5 579 aaKnown RBP22.28■■□□□ 1.16
SMC4-209ENST00000468653 DDX11L8A8MPP1 907 aa22.27■■□□□ 1.16
SMC4-209ENST00000468653 FGRP09769 529 aa22.27■■□□□ 1.16
SMC4-209ENST00000468653 PDCP20941 246 aa22.27■■□□□ 1.16
SMC4-209ENST00000468653 TEKT1Q969V4 418 aa22.27■■□□□ 1.16
SMC4-209ENST00000468653 UBAC1Q9BSL1 405 aa22.27■■□□□ 1.16
SMC4-209ENST00000468653 LY9Q9HBG7 655 aa22.27■■□□□ 1.16
SMC4-209ENST00000468653 RANBP6O60518 1105 aaKnown RBP22.27■■□□□ 1.16
SMC4-209ENST00000468653 JAK2O60674 1132 aa22.27■■□□□ 1.16
SMC4-209ENST00000468653 BAG4O95429 457 aaKnown RBP22.27■■□□□ 1.16
SMC4-209ENST00000468653 PDIA4P13667 645 aaKnown RBP22.27■■□□□ 1.16
SMC4-209ENST00000468653 LIFRP42702 1097 aa22.27■■□□□ 1.16
SMC4-209ENST00000468653 PDE4BQ07343 736 aa22.27■■□□□ 1.16
SMC4-209ENST00000468653 SLC4A8Q2Y0W8 1093 aa22.27■■□□□ 1.16
SMC4-209ENST00000468653 C12orf60Q5U649 245 aa22.27■■□□□ 1.16
SMC4-209ENST00000468653 LARP1BQ659C4 914 aaKnown RBP22.27■■□□□ 1.16
SMC4-209ENST00000468653 HHIPL2Q6UWX4 724 aa22.27■■□□□ 1.16
SMC4-209ENST00000468653 LARGE2Q8N3Y3 721 aa22.27■■□□□ 1.16
SMC4-209ENST00000468653 ZKSCAN3Q9BRR0 538 aa22.27■■□□□ 1.16
SMC4-209ENST00000468653 DHX16O60231 1041 aaKnown RBP22.26■■□□□ 1.15
SMC4-209ENST00000468653 PRDM1O75626 825 aa22.26■■□□□ 1.15
SMC4-209ENST00000468653 POLR3DP05423 398 aaPredicted RBP22.26■■□□□ 1.15
SMC4-209ENST00000468653 EVX2Q03828 476 aa22.26■■□□□ 1.15
SMC4-209ENST00000468653 WTAPQ15007 396 aa22.26■■□□□ 1.15
SMC4-209ENST00000468653 SGIP1Q9BQI5 828 aa22.26■■□□□ 1.15
SMC4-209ENST00000468653 ZNF277Q9NRM2 450 aaPredicted RBP22.26■■□□□ 1.15
SMC4-209ENST00000468653 SAP30BPQ9UHR5 308 aaKnown RBP22.26■■□□□ 1.15
SMC4-209ENST00000468653 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.26■■□□□ 1.152e-144■■■■■ 553.7
SMC4-209ENST00000468653 CD2APQ9Y5K6 639 aa22.26■■□□□ 1.15
SMC4-209ENST00000468653 CCDC69A6NI79 296 aa22.25■■□□□ 1.15
SMC4-209ENST00000468653 GOLGA6L22H0YM25 854 aa22.25■■□□□ 1.15
SMC4-209ENST00000468653 ORC4O43929 436 aa22.25■■□□□ 1.15
SMC4-209ENST00000468653 ZSCAN22P10073 491 aaPredicted RBP22.25■■□□□ 1.15
SMC4-209ENST00000468653 SGMS1Q86VZ5 419 aa22.25■■□□□ 1.15
SMC4-209ENST00000468653 KIAA0825Q8IV33 1275 aa22.25■■□□□ 1.15
SMC4-209ENST00000468653 TMTC2Q8N394 836 aa22.25■■□□□ 1.15
SMC4-209ENST00000468653 NSUN7Q8NE18 718 aaKnown RBP22.25■■□□□ 1.15
SMC4-209ENST00000468653 VPS33BQ9H267 617 aa22.25■■□□□ 1.15
SMC4-209ENST00000468653 HPS5Q9UPZ3 1129 aa22.25■■□□□ 1.15
SMC4-209ENST00000468653 LAMB1P07942 1786 aa22.25■■□□□ 1.15
SMC4-209ENST00000468653 HMGN5P82970 282 aaKnown RBP22.25■■□□□ 1.15
SMC4-209ENST00000468653 APOA5Q6Q788 366 aa22.25■■□□□ 1.15
SMC4-209ENST00000468653 SYNE3Q6ZMZ3 975 aa22.25■■□□□ 1.15
SMC4-209ENST00000468653 RAB11FIP4Q86YS3 637 aa22.25■■□□□ 1.15
SMC4-209ENST00000468653 FAM184AQ8NB25 1140 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 94.8 ms