RNA–Protein interactions for RNA: ENST00000467124.1

VPS13A-209, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5

Gene VPS13A, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-209ENST00000467124 PCDHB14Q9Y5E9 798 aa6.12□□□□□ -1.43
VPS13A-209ENST00000467124 CSADQ9Y600 493 aa6.12□□□□□ -1.43
VPS13A-209ENST00000467124 MRPL42Q9Y6G3 142 aaKnown RBP6.12□□□□□ -1.43
VPS13A-209ENST00000467124 CADPSQ9ULU8 1353 aa6.11□□□□□ -1.43
VPS13A-209ENST00000467124 TLDC2A0PJX2 215 aa6.11□□□□□ -1.43
VPS13A-209ENST00000467124 FAM221BA6H8Z2 402 aa6.11□□□□□ -1.43
VPS13A-209ENST00000467124 DDX3YO15523 660 aaKnown RBP6.11□□□□□ -1.43
VPS13A-209ENST00000467124 SELPP16109 830 aa6.11□□□□□ -1.43
VPS13A-209ENST00000467124 HOXB4P17483 251 aaPredicted RBP6.11□□□□□ -1.43
VPS13A-209ENST00000467124 LIG1P18858 919 aa6.11□□□□□ -1.43
VPS13A-209ENST00000467124 MAOBP27338 520 aa6.11□□□□□ -1.43
VPS13A-209ENST00000467124 NLRP12P59046 1061 aa6.11□□□□□ -1.43
VPS13A-209ENST00000467124 SERINC3Q13530 473 aa6.11□□□□□ -1.43
VPS13A-209ENST00000467124 SETDB1Q15047 1291 aa6.11□□□□□ -1.43
VPS13A-209ENST00000467124 LCE2AQ5TA79 106 aaPredicted RBP6.11□□□□□ -1.43
VPS13A-209ENST00000467124 NLGN1Q8N2Q7 840 aa6.11□□□□□ -1.43
VPS13A-209ENST00000467124 ZNF775Q96BV0 537 aaPredicted RBP6.11□□□□□ -1.43
VPS13A-209ENST00000467124 MRFAP1L1Q96HT8 127 aa6.11□□□□□ -1.43
VPS13A-209ENST00000467124 USP26Q9BXU7 913 aa6.11□□□□□ -1.43
VPS13A-209ENST00000467124 CCDC86Q9H6F5 360 aaKnown RBP6.11□□□□□ -1.43
VPS13A-209ENST00000467124 PRKAG3Q9UGI9 489 aa6.11□□□□□ -1.43
VPS13A-209ENST00000467124 MKL2Q9ULH7 1088 aa6.11□□□□□ -1.43
VPS13A-209ENST00000467124 CORINQ9Y5Q5 1042 aa6.11□□□□□ -1.43
VPS13A-209ENST00000467124 TACC3Q9Y6A5 838 aa6.11□□□□□ -1.43
VPS13A-209ENST00000467124 FAM86C2PA6NEL3 165 aa6.1□□□□□ -1.43
VPS13A-209ENST00000467124 TM4SF5O14894 197 aa6.1□□□□□ -1.43
VPS13A-209ENST00000467124 U2SURPO15042 1029 aaKnown RBP6.1□□□□□ -1.43
VPS13A-209ENST00000467124 ZNF165P49910 485 aa6.1□□□□□ -1.43
VPS13A-209ENST00000467124 PDE3AQ14432 1141 aa6.1□□□□□ -1.43
VPS13A-209ENST00000467124 INPP5AQ14642 412 aa6.1□□□□□ -1.43
VPS13A-209ENST00000467124 POU4F3Q15319 338 aa6.1□□□□□ -1.43
VPS13A-209ENST00000467124 WIPI1Q5MNZ9 446 aaPredicted RBP6.1□□□□□ -1.43
VPS13A-209ENST00000467124 LARP1BQ659C4 914 aaKnown RBP6.1□□□□□ -1.43
VPS13A-209ENST00000467124 SDE2Q6IQ49 451 aa6.1□□□□□ -1.43
VPS13A-209ENST00000467124 FBXO11Q86XK2 927 aa6.1□□□□□ -1.43
VPS13A-209ENST00000467124 WDR89Q96FK6 387 aaPredicted RBP6.1□□□□□ -1.43
VPS13A-209ENST00000467124 KLHDC7BQ96G42 594 aa6.1□□□□□ -1.43
VPS13A-209ENST00000467124 PUS7Q96PZ0 661 aaKnown RBP6.1□□□□□ -1.43
VPS13A-209ENST00000467124 TNKS2Q9H2K2 1166 aa6.1□□□□□ -1.43
VPS13A-209ENST00000467124 TBX22Q9Y458 520 aa6.1□□□□□ -1.43
VPS13A-209ENST00000467124 DCDC2CA8MYV0 355 aa6.09□□□□□ -1.43
VPS13A-209ENST00000467124 ARHGEF15O94989 841 aa6.09□□□□□ -1.43
VPS13A-209ENST00000467124 CD68P34810 354 aaPredicted RBP6.09□□□□□ -1.43
VPS13A-209ENST00000467124 RPL6Q02878 288 aaKnown RBP6.09□□□□□ -1.43
VPS13A-209ENST00000467124 RAB33AQ14088 237 aa6.09□□□□□ -1.43
VPS13A-209ENST00000467124 ZNF746Q6NUN9 644 aaPredicted RBP6.09□□□□□ -1.43
VPS13A-209ENST00000467124 LRFN4Q6PJG9 635 aa6.09□□□□□ -1.43
VPS13A-209ENST00000467124 LSRQ86X29 649 aaPredicted RBP6.09□□□□□ -1.43
VPS13A-209ENST00000467124 FMR1NBQ8N0W7 255 aaPredicted RBP6.09□□□□□ -1.43
VPS13A-209ENST00000467124 MICAL1Q8TDZ2 1067 aa6.09□□□□□ -1.43
VPS13A-209ENST00000467124 PLPPR2Q96GM1 343 aa6.09□□□□□ -1.43
VPS13A-209ENST00000467124 RRAGCQ9HB90 399 aa6.09□□□□□ -1.43
VPS13A-209ENST00000467124 SNTG2Q9NY99 539 aa6.09□□□□□ -1.43
VPS13A-209ENST00000467124 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.09□□□□□ -1.43
VPS13A-209ENST00000467124 ANKRD62A6NC57 917 aa6.08□□□□□ -1.44
VPS13A-209ENST00000467124 B2RBV5 119 aa6.08□□□□□ -1.44
VPS13A-209ENST00000467124 PPM1GO15355 546 aaPredicted RBP6.08□□□□□ -1.44
VPS13A-209ENST00000467124 ZNF862O60290 1169 aa6.08□□□□□ -1.44
VPS13A-209ENST00000467124 IMPDH2P12268 514 aa6.08□□□□□ -1.44
VPS13A-209ENST00000467124 ELNP15502 786 aa6.08□□□□□ -1.44
VPS13A-209ENST00000467124 GIPRP48546 466 aa6.08□□□□□ -1.44
VPS13A-209ENST00000467124 TCEAL1Q15170 157 aa6.08□□□□□ -1.44
VPS13A-209ENST00000467124 KIF4BQ2VIQ3 1234 aa6.08□□□□□ -1.44
VPS13A-209ENST00000467124 TRAPPC3LQ5T215 181 aa6.08□□□□□ -1.44
VPS13A-209ENST00000467124 PODNQ7Z5L7 613 aa6.08□□□□□ -1.44
VPS13A-209ENST00000467124 DMRTC2Q8IXT2 367 aaPredicted RBP6.08□□□□□ -1.44
VPS13A-209ENST00000467124 REXO1Q8N1G1 1221 aaKnown RBP6.08□□□□□ -1.44
VPS13A-209ENST00000467124 WHAMMQ8TF30 809 aa6.08□□□□□ -1.44
VPS13A-209ENST00000467124 DEPDC7Q96QD5 511 aa6.08□□□□□ -1.44
VPS13A-209ENST00000467124 ACTR10Q9NZ32 417 aa6.08□□□□□ -1.44
VPS13A-209ENST00000467124 ZNRF3Q9ULT6 936 aa6.08□□□□□ -1.44
VPS13A-209ENST00000467124 A0A0A0MRY4 1105 aa6.07□□□□□ -1.44
VPS13A-209ENST00000467124 LOC100289279A0A1B0GTE1 492 aa6.07□□□□□ -1.44
VPS13A-209ENST00000467124 PRAMEF27A3QJZ7 478 aa6.07□□□□□ -1.44
VPS13A-209ENST00000467124 DLL1O00548 723 aa6.07□□□□□ -1.44
VPS13A-209ENST00000467124 DEAF1O75398 565 aaPredicted RBP6.07□□□□□ -1.44
VPS13A-209ENST00000467124 NFE2L2Q16236 605 aa6.07□□□□□ -1.44
VPS13A-209ENST00000467124 PRRT3Q5FWE3 981 aa6.07□□□□□ -1.44
VPS13A-209ENST00000467124 NBPF6Q5VWK0 638 aa6.07□□□□□ -1.44
VPS13A-209ENST00000467124 LINC00114Q6XXX2 140 aa6.07□□□□□ -1.44
VPS13A-209ENST00000467124 ALYREFQ86V81 257 aaKnown RBP6.07□□□□□ -1.44
VPS13A-209ENST00000467124 C12orf40Q86WS4 652 aa6.07□□□□□ -1.44
VPS13A-209ENST00000467124 GALNT11Q8NCW6 608 aa6.07□□□□□ -1.44
VPS13A-209ENST00000467124 NBPF4Q96M43 638 aa6.07□□□□□ -1.44
VPS13A-209ENST00000467124 KANSL2Q9H9L4 492 aa6.07□□□□□ -1.44
VPS13A-209ENST00000467124 KCNK4Q9NYG8 393 aa6.07□□□□□ -1.44
VPS13A-209ENST00000467124 SIRPGQ9P1W8 387 aa6.07□□□□□ -1.44
VPS13A-209ENST00000467124 SNCAIPQ9Y6H5 919 aa6.07□□□□□ -1.44
VPS13A-209ENST00000467124 ADAM11O75078 769 aa6.06□□□□□ -1.44
VPS13A-209ENST00000467124 DLGAP3O95886 979 aa6.06□□□□□ -1.44
VPS13A-209ENST00000467124 HSP90B1P14625 803 aaKnown RBP6.06□□□□□ -1.44
VPS13A-209ENST00000467124 RASA3Q14644 834 aa6.06□□□□□ -1.44
VPS13A-209ENST00000467124 FOXD4L6Q3SYB3 417 aaPredicted RBP6.06□□□□□ -1.44
VPS13A-209ENST00000467124 FOXD4L3Q6VB84 417 aaPredicted RBP6.06□□□□□ -1.44
VPS13A-209ENST00000467124 OR6P1Q8NGX9 317 aa6.06□□□□□ -1.44
VPS13A-209ENST00000467124 ELMO3Q96BJ8 720 aa6.06□□□□□ -1.44
VPS13A-209ENST00000467124 TRIM11Q96F44 468 aa6.06□□□□□ -1.44
VPS13A-209ENST00000467124 MRPL18Q9H0U6 180 aaKnown RBP6.06□□□□□ -1.44
VPS13A-209ENST00000467124 SUGCTQ9HAC7 445 aa6.06□□□□□ -1.44
VPS13A-209ENST00000467124 KLHL3Q9UH77 587 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms