RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 NOL9Q5SY16 702 aaKnown RBP21.5■■□□□ 1.03
COL7A1-206ENST00000466591 PI16Q6UXB8 463 aa21.5■■□□□ 1.03
COL7A1-206ENST00000466591 SCYL3Q8IZE3 742 aa21.5■■□□□ 1.03
COL7A1-206ENST00000466591 FAM163AQ96GL9 167 aaPredicted RBP21.5■■□□□ 1.03
COL7A1-206ENST00000466591 TMEM106CQ9BVX2 250 aa21.5■■□□□ 1.03
COL7A1-206ENST00000466591 ZNF112Q9UJU3 913 aa21.5■■□□□ 1.03
COL7A1-206ENST00000466591 BAG3O95817 575 aa21.49■■□□□ 1.03
COL7A1-206ENST00000466591 ATP8B2P98198 1209 aa21.49■■□□□ 1.03
COL7A1-206ENST00000466591 TNNI3KQ59H18 835 aa21.49■■□□□ 1.03
COL7A1-206ENST00000466591 ANKRD23Q86SG2 305 aa21.49■■□□□ 1.03
COL7A1-206ENST00000466591 PARK7Q99497 189 aaKnown RBP21.49■■□□□ 1.03
COL7A1-206ENST00000466591 SNRKQ9NRH2 765 aa21.49■■□□□ 1.03
COL7A1-206ENST00000466591 ZHX2Q9Y6X8 837 aa21.49■■□□□ 1.03
COL7A1-206ENST00000466591 FPGT-TNNI3KV9GXZ4 949 aa21.49■■□□□ 1.03
COL7A1-206ENST00000466591 DOCK2Q92608 1830 aa21.49■■□□□ 1.03
COL7A1-206ENST00000466591 ZBED9Q6R2W3 1325 aa21.49■■□□□ 1.03
COL7A1-206ENST00000466591 GPR75-ASB3A0A0A6YYF3 556 aa21.48■■□□□ 1.03
COL7A1-206ENST00000466591 MS4A1P11836 297 aa21.48■■□□□ 1.03
COL7A1-206ENST00000466591 MCAMP43121 646 aa21.48■■□□□ 1.03
COL7A1-206ENST00000466591 NAA16Q6N069 864 aaPredicted RBP21.48■■□□□ 1.03
COL7A1-206ENST00000466591 GADL1Q6ZQY3 521 aa21.48■■□□□ 1.03
COL7A1-206ENST00000466591 TEX11Q8IYF3 940 aa21.48■■□□□ 1.03
COL7A1-206ENST00000466591 TRIM34Q9BYJ4 488 aa21.48■■□□□ 1.03
COL7A1-206ENST00000466591 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.48■■□□□ 1.03
COL7A1-206ENST00000466591 MAP4K4O95819 1239 aaPredicted RBP21.47■■□□□ 1.03
COL7A1-206ENST00000466591 FASTKD5Q7L8L6 764 aaKnown RBP21.47■■□□□ 1.03
COL7A1-206ENST00000466591 NSUN4Q96CB9 384 aaKnown RBP21.47■■□□□ 1.03
COL7A1-206ENST00000466591 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.47■■□□□ 1.03
COL7A1-206ENST00000466591 GPR108Q9NPR9 543 aa21.47■■□□□ 1.03
COL7A1-206ENST00000466591 CPA4Q9UI42 421 aa21.47■■□□□ 1.03
COL7A1-206ENST00000466591 DDTLA6NHG4 134 aaPredicted RBP21.46■■□□□ 1.03
COL7A1-206ENST00000466591 CXCL11O14625 94 aa21.46■■□□□ 1.03
COL7A1-206ENST00000466591 LACTBP83111 547 aaPredicted RBP21.46■■□□□ 1.03
COL7A1-206ENST00000466591 POLA2Q14181 598 aa21.46■■□□□ 1.03
COL7A1-206ENST00000466591 SLC4A8Q2Y0W8 1093 aa21.46■■□□□ 1.03
COL7A1-206ENST00000466591 SSH3Q8TE77 659 aa21.46■■□□□ 1.03
COL7A1-206ENST00000466591 DBNDD2Q9BQY9 259 aa21.46■■□□□ 1.03
COL7A1-206ENST00000466591 DDX4Q9NQI0 724 aaKnown RBP21.46■■□□□ 1.03
COL7A1-206ENST00000466591 KCNH4Q9UQ05 1017 aa21.46■■□□□ 1.03
COL7A1-206ENST00000466591 CTNND1O60716 968 aaKnown RBP21.45■■□□□ 1.02
COL7A1-206ENST00000466591 FMNL1O95466 1100 aaPredicted RBP21.45■■□□□ 1.02
COL7A1-206ENST00000466591 MYCP01106 439 aaPredicted RBP21.45■■□□□ 1.02
COL7A1-206ENST00000466591 GNRH1P01148 92 aa21.45■■□□□ 1.02
COL7A1-206ENST00000466591 PLCG2P16885 1265 aa21.45■■□□□ 1.02
COL7A1-206ENST00000466591 HOXD10P28358 340 aa21.45■■□□□ 1.02
COL7A1-206ENST00000466591 PTCH2Q9Y6C5 1203 aa21.45■■□□□ 1.02
COL7A1-206ENST00000466591 TRIM75PA6NK02 468 aa21.44■■□□□ 1.02
COL7A1-206ENST00000466591 ERC1Q8IUD2 1116 aa21.44■■□□□ 1.02
COL7A1-206ENST00000466591 SMCR8Q8TEV9 937 aaPredicted RBP21.44■■□□□ 1.02
COL7A1-206ENST00000466591 BCL11AQ9H165 835 aa21.44■■□□□ 1.02
COL7A1-206ENST00000466591 AATFQ9NY61 560 aaKnown RBP eCLIP21.44■■□□□ 1.02
COL7A1-206ENST00000466591 ZBTB7BO15156 539 aaPredicted RBP21.43■■□□□ 1.02
COL7A1-206ENST00000466591 PTPRAP18433 802 aa21.43■■□□□ 1.02
COL7A1-206ENST00000466591 SH3BP5LQ7L8J4 393 aa21.43■■□□□ 1.02
COL7A1-206ENST00000466591 ARMC5Q96C12 935 aa21.43■■□□□ 1.02
COL7A1-206ENST00000466591 RFX7Q2KHR2 1363 aa21.43■■□□□ 1.02
COL7A1-206ENST00000466591 PHF20L1A8MW92 1017 aa21.42■■□□□ 1.02
COL7A1-206ENST00000466591 RLBP1P12271 317 aa21.42■■□□□ 1.02
COL7A1-206ENST00000466591 PSMC4P43686 418 aa21.42■■□□□ 1.02
COL7A1-206ENST00000466591 PRMT2P55345 433 aa21.42■■□□□ 1.02
COL7A1-206ENST00000466591 RHBDL3P58872 404 aa21.42■■□□□ 1.02
COL7A1-206ENST00000466591 CRACR2BQ8N4Y2 399 aaPredicted RBP21.42■■□□□ 1.02
COL7A1-206ENST00000466591 RAET1EQ8TD07 263 aa21.42■■□□□ 1.02
COL7A1-206ENST00000466591 PANK1Q8TE04 598 aa21.42■■□□□ 1.02
COL7A1-206ENST00000466591 ARHGAP39Q9C0H5 1083 aa21.42■■□□□ 1.02
COL7A1-206ENST00000466591 CCDC8Q9H0W5 538 aaPredicted RBP21.42■■□□□ 1.02
COL7A1-206ENST00000466591 OSBPL5Q9H0X9 879 aaPredicted RBP21.42■■□□□ 1.02
COL7A1-206ENST00000466591 POTEFA5A3E0 1075 aa21.41■■□□□ 1.02
COL7A1-206ENST00000466591 FAM196BA6NMK8 535 aa21.41■■□□□ 1.02
COL7A1-206ENST00000466591 NPM3O75607 178 aaKnown RBP21.41■■□□□ 1.02
COL7A1-206ENST00000466591 HSP90AB4PQ58FF6 505 aa21.41■■□□□ 1.02
COL7A1-206ENST00000466591 SH3RF3Q8TEJ3 882 aaPredicted RBP21.41■■□□□ 1.02
COL7A1-206ENST00000466591 ATRNL1Q5VV63 1379 aa21.4■■□□□ 1.02
COL7A1-206ENST00000466591 A0A0G2JLL6 359 aaPredicted RBP21.4■■□□□ 1.02
COL7A1-206ENST00000466591 IDH1O75874 414 aaKnown RBP21.4■■□□□ 1.02
COL7A1-206ENST00000466591 CYP2C8P10632 490 aa21.4■■□□□ 1.02
COL7A1-206ENST00000466591 FCGRTP55899 365 aa21.4■■□□□ 1.02
COL7A1-206ENST00000466591 PRPF38BQ5VTL8 546 aaKnown RBP21.4■■□□□ 1.02
COL7A1-206ENST00000466591 C17orf99Q6UX52 265 aa21.4■■□□□ 1.02
COL7A1-206ENST00000466591 PRRT2Q7Z6L0 340 aaPredicted RBP21.4■■□□□ 1.02
COL7A1-206ENST00000466591 BIN2Q9UBW5 565 aaPredicted RBP21.4■■□□□ 1.02
COL7A1-206ENST00000466591 NOP58Q9Y2X3 529 aaKnown RBP21.4■■□□□ 1.02
COL7A1-206ENST00000466591 TBC1D12O60347 775 aa21.39■■□□□ 1.01
COL7A1-206ENST00000466591 ZAP70P43403 619 aa21.39■■□□□ 1.01
COL7A1-206ENST00000466591 CEP85Q6P2H3 762 aa21.39■■□□□ 1.01
COL7A1-206ENST00000466591 AACSQ86V21 672 aa21.39■■□□□ 1.01
COL7A1-206ENST00000466591 SH3TC2Q8TF17 1288 aa21.39■■□□□ 1.01
COL7A1-206ENST00000466591 ZNF384Q8TF68 577 aa21.39■■□□□ 1.01
COL7A1-206ENST00000466591 TGFBRAP1Q8WUH2 860 aa21.39■■□□□ 1.01
COL7A1-206ENST00000466591 DHX36Q9H2U1 1008 aaKnown RBP21.39■■□□□ 1.01
COL7A1-206ENST00000466591 AS3MTQ9HBK9 375 aa21.39■■□□□ 1.01
COL7A1-206ENST00000466591 PNMA3Q9UL41 463 aa21.39■■□□□ 1.01
COL7A1-206ENST00000466591 EXOC6BQ9Y2D4 811 aa21.39■■□□□ 1.01
COL7A1-206ENST00000466591 AFG3L2Q9Y4W6 797 aa21.39■■□□□ 1.01
COL7A1-206ENST00000466591 DOCK1Q14185 1865 aa21.39■■□□□ 1.01
COL7A1-206ENST00000466591 MYPNQ86TC9 1320 aa21.38■■□□□ 1.01
COL7A1-206ENST00000466591 APBB1O00213 710 aa21.38■■□□□ 1.01
COL7A1-206ENST00000466591 HMMRO75330 724 aa21.38■■□□□ 1.01
COL7A1-206ENST00000466591 CYP2E1P05181 493 aaPredicted RBP21.38■■□□□ 1.01
COL7A1-206ENST00000466591 SLURP2P0DP57 97 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms