RNA–Protein interactions for RNA: ENST00000466411.1

CLDN4-204, Transcript of claudin 4, humanhuman

TSL 4

Gene CLDN4, Length 593 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-204ENST00000466411 BSDC1Q9NW68 430 aaPredicted RBP8.59□□□□□ -1.03
CLDN4-204ENST00000466411 PODXL2Q9NZ53 605 aa8.59□□□□□ -1.03
CLDN4-204ENST00000466411 SRRDQ9UH36 339 aa8.59□□□□□ -1.03
CLDN4-204ENST00000466411 RIPOR2Q9Y4F9 1068 aa8.59□□□□□ -1.03
CLDN4-204ENST00000466411 A0A1B0GUL6 1792 aa8.58□□□□□ -1.04
CLDN4-204ENST00000466411 USP2O75604 605 aaPredicted RBP8.58□□□□□ -1.04
CLDN4-204ENST00000466411 NBPF7P0C2Y1 421 aaPredicted RBP8.58□□□□□ -1.04
CLDN4-204ENST00000466411 ITGA6P23229 1130 aa8.58□□□□□ -1.04
CLDN4-204ENST00000466411 TAF1CQ15572 869 aaPredicted RBP8.58□□□□□ -1.04
CLDN4-204ENST00000466411 RTL5Q5HYW3 569 aaPredicted RBP8.58□□□□□ -1.04
CLDN4-204ENST00000466411 LMBR1LQ6UX01 489 aa8.58□□□□□ -1.04
CLDN4-204ENST00000466411 PAWRQ96IZ0 340 aaKnown RBP8.58□□□□□ -1.04
CLDN4-204ENST00000466411 TRIM47Q96LD4 638 aa8.58□□□□□ -1.04
CLDN4-204ENST00000466411 EYA3Q99504 573 aa8.58□□□□□ -1.04
CLDN4-204ENST00000466411 UNC93B1Q9H1C4 597 aa8.58□□□□□ -1.04
CLDN4-204ENST00000466411 SEMA6BQ9H3T3 888 aa8.58□□□□□ -1.04
CLDN4-204ENST00000466411 BICC1Q9H694 974 aaKnown RBP8.58□□□□□ -1.04
CLDN4-204ENST00000466411 ZFYVE28Q9HCC9 887 aa8.58□□□□□ -1.04
CLDN4-204ENST00000466411 CHMP3Q9Y3E7 222 aa8.58□□□□□ -1.04
CLDN4-204ENST00000466411 XDHP47989 1333 aa8.57□□□□□ -1.04
CLDN4-204ENST00000466411 MROH5Q6ZUA9 1318 aa8.57□□□□□ -1.04
CLDN4-204ENST00000466411 OTOFQ9HC10 1997 aa8.57□□□□□ -1.04
CLDN4-204ENST00000466411 SYN1P17600 705 aa8.57□□□□□ -1.04
CLDN4-204ENST00000466411 CAPN2P17655 700 aa8.57□□□□□ -1.04
CLDN4-204ENST00000466411 FOXO4P98177 505 aa8.57□□□□□ -1.04
CLDN4-204ENST00000466411 HSP90AB4PQ58FF6 505 aa8.57□□□□□ -1.04
CLDN4-204ENST00000466411 RPAP2Q8IXW5 612 aaPredicted RBP8.57□□□□□ -1.04
CLDN4-204ENST00000466411 DIS3LQ8TF46 1054 aaKnown RBP8.57□□□□□ -1.04
CLDN4-204ENST00000466411 UBE2OQ9C0C9 1292 aaKnown RBP8.57□□□□□ -1.04
CLDN4-204ENST00000466411 ZC3H12CQ9C0D7 883 aaKnown RBP8.57□□□□□ -1.04
CLDN4-204ENST00000466411 GREM2Q9H772 168 aa8.57□□□□□ -1.04
CLDN4-204ENST00000466411 TULP1O00294 542 aaPredicted RBP8.56□□□□□ -1.04
CLDN4-204ENST00000466411 CIAO1O76071 339 aa8.56□□□□□ -1.04
CLDN4-204ENST00000466411 OSBPP22059 807 aa8.56□□□□□ -1.04
CLDN4-204ENST00000466411 MLLT3P42568 568 aaPredicted RBP8.56□□□□□ -1.04
CLDN4-204ENST00000466411 DACT2Q5SW24 774 aa8.56□□□□□ -1.04
CLDN4-204ENST00000466411 C17orf99Q6UX52 265 aa8.56□□□□□ -1.04
CLDN4-204ENST00000466411 LDHAL6AQ6ZMR3 332 aa8.56□□□□□ -1.04
CLDN4-204ENST00000466411 APOBEC3FQ8IUX4 373 aaKnown RBP8.56□□□□□ -1.04
CLDN4-204ENST00000466411 C7orf61Q8IZ16 206 aa8.56□□□□□ -1.04
CLDN4-204ENST00000466411 SUCLG2Q96I99 432 aa8.56□□□□□ -1.04
CLDN4-204ENST00000466411 MEIS3Q99687 375 aa8.56□□□□□ -1.04
CLDN4-204ENST00000466411 MXD3Q9BW11 206 aa8.56□□□□□ -1.04
CLDN4-204ENST00000466411 DEFB129Q9H1M3 183 aa8.56□□□□□ -1.04
CLDN4-204ENST00000466411 PAK6Q9NQU5 681 aaPredicted RBP8.56□□□□□ -1.04
CLDN4-204ENST00000466411 ANKIB1Q9P2G1 1089 aa8.56□□□□□ -1.04
CLDN4-204ENST00000466411 LEMD3Q9Y2U8 911 aa8.56□□□□□ -1.04
CLDN4-204ENST00000466411 LRRFIP2Q9Y608 721 aaKnown RBP8.56□□□□□ -1.04
CLDN4-204ENST00000466411 DOCK3Q8IZD9 2030 aa8.56□□□□□ -1.04
CLDN4-204ENST00000466411 ARAP2Q8WZ64 1704 aa8.55□□□□□ -1.04
CLDN4-204ENST00000466411 USP17L3A6NCW0 530 aa8.55□□□□□ -1.04
CLDN4-204ENST00000466411 USP17L4A6NCW7 530 aa8.55□□□□□ -1.04
CLDN4-204ENST00000466411 SRGAP3O43295 1099 aa8.55□□□□□ -1.04
CLDN4-204ENST00000466411 SASH1O94885 1247 aa8.55□□□□□ -1.04
CLDN4-204ENST00000466411 ATP2B4P23634 1241 aa8.55□□□□□ -1.04
CLDN4-204ENST00000466411 IL15P40933 162 aaPredicted RBP8.55□□□□□ -1.04
CLDN4-204ENST00000466411 USP17L1Q7RTZ2 530 aa8.55□□□□□ -1.04
CLDN4-204ENST00000466411 ERC1Q8IUD2 1116 aa8.55□□□□□ -1.04
CLDN4-204ENST00000466411 USP38Q8NB14 1042 aa8.55□□□□□ -1.04
CLDN4-204ENST00000466411 PANK1Q8TE04 598 aa8.55□□□□□ -1.04
CLDN4-204ENST00000466411 MYLIPQ8WY64 445 aa8.55□□□□□ -1.04
CLDN4-204ENST00000466411 TTYH1Q9H313 450 aaPredicted RBP8.55□□□□□ -1.04
CLDN4-204ENST00000466411 COPRSQ9NQ92 184 aa8.55□□□□□ -1.04
CLDN4-204ENST00000466411 CNNM1Q9NRU3 951 aa8.55□□□□□ -1.04
CLDN4-204ENST00000466411 ZBTB40Q9NUA8 1239 aa8.55□□□□□ -1.04
CLDN4-204ENST00000466411 GGA1Q9UJY5 639 aa8.55□□□□□ -1.04
CLDN4-204ENST00000466411 COL1A1P02452 1464 aaPredicted RBP8.55□□□□□ -1.04
CLDN4-204ENST00000466411 MED23Q9ULK4 1368 aa8.54□□□□□ -1.04
CLDN4-204ENST00000466411 PPP1R12BO60237 982 aaPredicted RBP8.54□□□□□ -1.04
CLDN4-204ENST00000466411 NEFLP07196 543 aa8.54□□□□□ -1.04
CLDN4-204ENST00000466411 RLBP1P12271 317 aa8.54□□□□□ -1.04
CLDN4-204ENST00000466411 PSMC4P43686 418 aa8.54□□□□□ -1.04
CLDN4-204ENST00000466411 KCNJ4P48050 445 aa8.54□□□□□ -1.04
CLDN4-204ENST00000466411 MMP14P50281 582 aa8.54□□□□□ -1.04
CLDN4-204ENST00000466411 PODNQ7Z5L7 613 aa8.54□□□□□ -1.04
CLDN4-204ENST00000466411 ALYREFQ86V81 257 aaKnown RBP8.54□□□□□ -1.04
CLDN4-204ENST00000466411 ANKRD13AQ8IZ07 590 aa8.54□□□□□ -1.04
CLDN4-204ENST00000466411 ANKRD44Q8N8A2 993 aa8.54□□□□□ -1.04
CLDN4-204ENST00000466411 OPTNQ96CV9 577 aa8.54□□□□□ -1.04
CLDN4-204ENST00000466411 AKAP2Q9Y2D5 859 aa8.54□□□□□ -1.04
CLDN4-204ENST00000466411 COG6Q9Y2V7 657 aa8.54□□□□□ -1.04
CLDN4-204ENST00000466411 MYH13Q9UKX3 1938 aa8.54□□□□□ -1.04
CLDN4-204ENST00000466411 FAM205AQ6ZU69 1335 aa8.54□□□□□ -1.04
CLDN4-204ENST00000466411 ADGRA2Q96PE1 1338 aa8.54□□□□□ -1.04
CLDN4-204ENST00000466411 MGAMO43451 1857 aa8.53□□□□□ -1.04
CLDN4-204ENST00000466411 CCL15-CCL14A0A0B4J2E2 113 aa8.53□□□□□ -1.04
CLDN4-204ENST00000466411 TFRCP02786 760 aaKnown RBP8.53□□□□□ -1.04
CLDN4-204ENST00000466411 UBXN2AP68543 259 aa8.53□□□□□ -1.04
CLDN4-204ENST00000466411 UBE4AQ14139 1066 aa8.53□□□□□ -1.04
CLDN4-204ENST00000466411 KIF22Q14807 665 aa8.53□□□□□ -1.04
CLDN4-204ENST00000466411 CCL15Q16663 113 aa8.53□□□□□ -1.04
CLDN4-204ENST00000466411 NBPF12Q5TAG4 269 aaPredicted RBP8.53□□□□□ -1.04
CLDN4-204ENST00000466411 ZNF697Q5TEC3 545 aa8.53□□□□□ -1.04
CLDN4-204ENST00000466411 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.53□□□□□ -1.04
CLDN4-204ENST00000466411 NECAB2Q7Z6G3 386 aa8.53□□□□□ -1.04
CLDN4-204ENST00000466411 RAET1EQ8TD07 263 aa8.53□□□□□ -1.04
CLDN4-204ENST00000466411 SSH3Q8TE77 659 aa8.53□□□□□ -1.04
CLDN4-204ENST00000466411 KAZALD1Q96I82 304 aa8.53□□□□□ -1.04
CLDN4-204ENST00000466411 DEFB118Q96PH6 123 aa8.53□□□□□ -1.04
CLDN4-204ENST00000466411 ZCCHC17Q9NP64 241 aaKnown RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms