RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 LRRFIP2Q9Y608 721 aaKnown RBP14.79□□□□□ -0.04
SQSTM1-206ENST00000466342 EYSQ5T1H1 3165 aa14.79□□□□□ -0.04
SQSTM1-206ENST00000466342 MROH5Q6ZUA9 1318 aa14.78□□□□□ -0.04
SQSTM1-206ENST00000466342 POTEB2H3BUK9 544 aa14.78□□□□□ -0.04
SQSTM1-206ENST00000466342 ELNP15502 786 aa14.78□□□□□ -0.04
SQSTM1-206ENST00000466342 MAGEA10P43363 369 aaPredicted RBP14.78□□□□□ -0.04
SQSTM1-206ENST00000466342 RRP1P56182 461 aaKnown RBP14.78□□□□□ -0.04
SQSTM1-206ENST00000466342 MVPQ14764 893 aaKnown RBP14.78□□□□□ -0.04
SQSTM1-206ENST00000466342 MFSD14BQ5SR56 506 aa14.78□□□□□ -0.04
SQSTM1-206ENST00000466342 FAM109BQ6ICB4 259 aaPredicted RBP14.78□□□□□ -0.04
SQSTM1-206ENST00000466342 ANKLE1Q8NAG6 615 aa14.78□□□□□ -0.04
SQSTM1-206ENST00000466342 HOOK2Q96ED9 719 aa14.78□□□□□ -0.04
SQSTM1-206ENST00000466342 PUS3Q9BZE2 481 aaKnown RBP14.78□□□□□ -0.04
SQSTM1-206ENST00000466342 LAMA2P24043 3122 aaKnown RBP14.78□□□□□ -0.04
SQSTM1-206ENST00000466342 SPTBN5Q9NRC6 3674 aaKnown RBP14.77□□□□□ -0.04
SQSTM1-206ENST00000466342 SYN1P17600 705 aa14.77□□□□□ -0.05
SQSTM1-206ENST00000466342 CRKP46108 304 aa14.77□□□□□ -0.05
SQSTM1-206ENST00000466342 FLT3LGP49771 235 aa14.77□□□□□ -0.05
SQSTM1-206ENST00000466342 IRF5Q13568 498 aa14.77□□□□□ -0.05
SQSTM1-206ENST00000466342 C20orf194Q5TEA3 1177 aa14.77□□□□□ -0.05
SQSTM1-206ENST00000466342 DIS3LQ8TF46 1054 aaKnown RBP14.77□□□□□ -0.05
SQSTM1-206ENST00000466342 UBE2OQ9C0C9 1292 aaKnown RBP14.77□□□□□ -0.05
SQSTM1-206ENST00000466342 KCNH4Q9UQ05 1017 aa14.77□□□□□ -0.05
SQSTM1-206ENST00000466342 COG6Q9Y2V7 657 aa14.77□□□□□ -0.05
SQSTM1-206ENST00000466342 GNAI2P04899 355 aa14.76□□□□□ -0.05
SQSTM1-206ENST00000466342 MOGSQ13724 837 aa14.76□□□□□ -0.05
SQSTM1-206ENST00000466342 GUCD1Q96NT3 240 aa14.76□□□□□ -0.05
SQSTM1-206ENST00000466342 PARK7Q99497 189 aaKnown RBP14.76□□□□□ -0.05
SQSTM1-206ENST00000466342 DDX19BQ9UMR2 479 aa14.76□□□□□ -0.05
SQSTM1-206ENST00000466342 DDX60LQ5H9U9 1706 aaKnown RBP14.75□□□□□ -0.05
SQSTM1-206ENST00000466342 HIBADHP31937 336 aaKnown RBP14.75□□□□□ -0.05
SQSTM1-206ENST00000466342 DCAF15Q66K64 600 aa14.75□□□□□ -0.05
SQSTM1-206ENST00000466342 FAM83AQ86UY5 434 aa14.75□□□□□ -0.05
SQSTM1-206ENST00000466342 TDRD7Q8NHU6 1098 aaKnown RBP14.75□□□□□ -0.05
SQSTM1-206ENST00000466342 FAM84BQ96KN1 310 aaPredicted RBP14.75□□□□□ -0.05
SQSTM1-206ENST00000466342 NBPF3Q9H094 633 aa14.75□□□□□ -0.05
SQSTM1-206ENST00000466342 PRUNE2Q8WUY3 3088 aa14.75□□□□□ -0.05
SQSTM1-206ENST00000466342 PDE8BO95263 885 aa14.74□□□□□ -0.05
SQSTM1-206ENST00000466342 CYP2C8P10632 490 aa14.74□□□□□ -0.05
SQSTM1-206ENST00000466342 CACNB3P54284 484 aa14.74□□□□□ -0.05
SQSTM1-206ENST00000466342 HDLBPQ00341 1268 aaKnown RBP14.74□□□□□ -0.05
SQSTM1-206ENST00000466342 MTX1Q13505 466 aa14.74□□□□□ -0.05
SQSTM1-206ENST00000466342 LRRC24Q50LG9 513 aa14.74□□□□□ -0.05
SQSTM1-206ENST00000466342 GPAT2Q6NUI2 795 aa14.74□□□□□ -0.05
SQSTM1-206ENST00000466342 ZNF341Q9BYN7 854 aa14.74□□□□□ -0.05
SQSTM1-206ENST00000466342 COL9A1P20849 921 aa14.73□□□□□ -0.05
SQSTM1-206ENST00000466342 INPP5BP32019 993 aa14.73□□□□□ -0.05
SQSTM1-206ENST00000466342 GYG1P46976 350 aa14.73□□□□□ -0.05
SQSTM1-206ENST00000466342 RFX5P48382 616 aaPredicted RBP14.73□□□□□ -0.05
SQSTM1-206ENST00000466342 METTL24Q5JXM2 366 aa14.73□□□□□ -0.05
SQSTM1-206ENST00000466342 FKBP1CQ5VVH2 108 aa14.73□□□□□ -0.05
SQSTM1-206ENST00000466342 FBXO33Q7Z6M2 555 aa14.73□□□□□ -0.05
SQSTM1-206ENST00000466342 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.73□□□□□ -0.053e-7■□□□□ 10
SQSTM1-206ENST00000466342 CHMP4BQ9H444 224 aaKnown RBP14.73□□□□□ -0.05
SQSTM1-206ENST00000466342 TNPO2O14787 897 aaKnown RBP14.72□□□□□ -0.05
SQSTM1-206ENST00000466342 CAVIN4Q5BKX8 364 aa14.72□□□□□ -0.05
SQSTM1-206ENST00000466342 MIGA2Q7L4E1 593 aa14.72□□□□□ -0.05
SQSTM1-206ENST00000466342 VGLL2Q8N8G2 317 aa14.72□□□□□ -0.05
SQSTM1-206ENST00000466342 C1orf115Q9H7X2 142 aa14.72□□□□□ -0.05
SQSTM1-206ENST00000466342 TMOD2Q9NZR1 351 aa14.72□□□□□ -0.05
SQSTM1-206ENST00000466342 ZNF112Q9UJU3 913 aa14.72□□□□□ -0.05
SQSTM1-206ENST00000466342 FBXO3Q9UK99 471 aa14.72□□□□□ -0.05
SQSTM1-206ENST00000466342 EYA2O00167 538 aa14.71□□□□□ -0.05
SQSTM1-206ENST00000466342 CXCL11O14625 94 aa14.71□□□□□ -0.05
SQSTM1-206ENST00000466342 SRGAP3O43295 1099 aa14.71□□□□□ -0.05
SQSTM1-206ENST00000466342 VPS37DQ86XT2 251 aa14.71□□□□□ -0.05
SQSTM1-206ENST00000466342 KLHDC4Q8TBB5 520 aa14.71□□□□□ -0.05
SQSTM1-206ENST00000466342 SYMPKQ92797 1274 aaKnown RBP14.71□□□□□ -0.05
SQSTM1-206ENST00000466342 FAM161BQ96MY7 647 aa14.71□□□□□ -0.05
SQSTM1-206ENST00000466342 C11orf49Q9H6J7 331 aa14.71□□□□□ -0.05
SQSTM1-206ENST00000466342 ZBTB40Q9NUA8 1239 aa14.71□□□□□ -0.05
SQSTM1-206ENST00000466342 PTPRFP10586 1907 aa14.7□□□□□ -0.06
SQSTM1-206ENST00000466342 TEKT1Q969V4 418 aa14.7□□□□□ -0.06
SQSTM1-206ENST00000466342 COA7Q96BR5 231 aa14.7□□□□□ -0.06
SQSTM1-206ENST00000466342 MRIQ9BWK5 157 aa14.7□□□□□ -0.06
SQSTM1-206ENST00000466342 TAOK2Q9UL54 1235 aa14.7□□□□□ -0.06
SQSTM1-206ENST00000466342 RPAP1Q9BWH6 1393 aaPredicted RBP14.7□□□□□ -0.06
SQSTM1-206ENST00000466342 PNMA6EA0A0J9YXQ4 647 aa14.69□□□□□ -0.06
SQSTM1-206ENST00000466342 IFIT1P09914 478 aaKnown RBP14.69□□□□□ -0.06
SQSTM1-206ENST00000466342 FGFR2P21802 821 aa14.69□□□□□ -0.06
SQSTM1-206ENST00000466342 ATP8B2P98198 1209 aa14.69□□□□□ -0.06
SQSTM1-206ENST00000466342 PUM3Q15397 648 aaKnown RBP14.69□□□□□ -0.06
SQSTM1-206ENST00000466342 GRIK5Q16478 980 aa14.69□□□□□ -0.06
SQSTM1-206ENST00000466342 FASTKD5Q7L8L6 764 aaKnown RBP14.69□□□□□ -0.06
SQSTM1-206ENST00000466342 TBC1D22AQ8WUA7 517 aa14.69□□□□□ -0.06
SQSTM1-206ENST00000466342 ZDHHC15Q96MV8 337 aa14.69□□□□□ -0.06
SQSTM1-206ENST00000466342 COPRSQ9NQ92 184 aa14.69□□□□□ -0.06
SQSTM1-206ENST00000466342 SUPT16HQ9Y5B9 1047 aaKnown RBP14.69□□□□□ -0.06
SQSTM1-206ENST00000466342 COL2A1P02458 1487 aaPredicted RBP14.69□□□□□ -0.06
SQSTM1-206ENST00000466342 FRAT2O75474 233 aaPredicted RBP14.68□□□□□ -0.06
SQSTM1-206ENST00000466342 CIAO1O76071 339 aa14.68□□□□□ -0.06
SQSTM1-206ENST00000466342 NOL9Q5SY16 702 aaKnown RBP14.68□□□□□ -0.06
SQSTM1-206ENST00000466342 ZNF697Q5TEC3 545 aa14.68□□□□□ -0.06
SQSTM1-206ENST00000466342 CEP85Q6P2H3 762 aa14.68□□□□□ -0.06
SQSTM1-206ENST00000466342 ATG9AQ7Z3C6 839 aa14.68□□□□□ -0.06
SQSTM1-206ENST00000466342 SSH3Q8TE77 659 aa14.68□□□□□ -0.06
SQSTM1-206ENST00000466342 LPIN2Q92539 896 aa14.68□□□□□ -0.06
SQSTM1-206ENST00000466342 HMX1Q9NP08 348 aaPredicted RBP14.68□□□□□ -0.06
SQSTM1-206ENST00000466342 SLC45A1Q9Y2W3 748 aa14.68□□□□□ -0.06
SQSTM1-206ENST00000466342 DNAH12Q6ZR08 3092 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms