RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 MAPKAPK5Q8IW41 473 aa14.13□□□□□ -0.15
CUX1-207ENST00000465461 CLMNQ96JQ2 1002 aa14.13□□□□□ -0.15
CUX1-207ENST00000465461 PAPPA2Q9BXP8 1791 aa14.13□□□□□ -0.15
CUX1-207ENST00000465461 AK9Q5TCS8 1911 aa14.13□□□□□ -0.15
CUX1-207ENST00000465461 MAGEB6P1A0A0J9YX57 407 aa14.12□□□□□ -0.15
CUX1-207ENST00000465461 PPP1R12BO60237 982 aaPredicted RBP14.12□□□□□ -0.15
CUX1-207ENST00000465461 ENTPD3O75355 529 aa14.12□□□□□ -0.15
CUX1-207ENST00000465461 FKBP1BP68106 108 aa14.12□□□□□ -0.15
CUX1-207ENST00000465461 PLEKHM2Q8IWE5 1019 aa14.12□□□□□ -0.15
CUX1-207ENST00000465461 RIOK1Q9BRS2 568 aaKnown RBP14.12□□□□□ -0.15
CUX1-207ENST00000465461 STAP2Q9UGK3 403 aa14.12□□□□□ -0.15
CUX1-207ENST00000465461 SAP30BPQ9UHR5 308 aaKnown RBP14.12□□□□□ -0.15
CUX1-207ENST00000465461 FAM155AB1AL88 458 aaPredicted RBP14.11□□□□□ -0.15
CUX1-207ENST00000465461 SKAP1Q86WV1 359 aa14.11□□□□□ -0.15
CUX1-207ENST00000465461 LCORLQ8N3X6 602 aa14.11□□□□□ -0.15
CUX1-207ENST00000465461 KBTBD3Q8NAB2 608 aa14.11□□□□□ -0.15
CUX1-207ENST00000465461 CSRNP1Q96S65 589 aa14.11□□□□□ -0.15
CUX1-207ENST00000465461 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.11□□□□□ -0.154e-13■□□□□ 9.1
CUX1-207ENST00000465461 OSBPL5Q9H0X9 879 aaPredicted RBP14.11□□□□□ -0.15
CUX1-207ENST00000465461 ARMT1Q9H993 441 aa14.11□□□□□ -0.15
CUX1-207ENST00000465461 FAM196BA6NMK8 535 aa14.1□□□□□ -0.15
CUX1-207ENST00000465461 PRKAB2O43741 272 aa14.1□□□□□ -0.15
CUX1-207ENST00000465461 PLCG2P16885 1265 aa14.1□□□□□ -0.15
CUX1-207ENST00000465461 IREB2P48200 963 aaKnown RBP14.1□□□□□ -0.15
CUX1-207ENST00000465461 MAP3K11Q16584 847 aa14.1□□□□□ -0.15
CUX1-207ENST00000465461 LDLRAD1Q5T700 205 aa14.1□□□□□ -0.15
CUX1-207ENST00000465461 RASAL3Q86YV0 1011 aa14.1□□□□□ -0.15
CUX1-207ENST00000465461 HHIPL1Q96JK4 782 aa14.1□□□□□ -0.15
CUX1-207ENST00000465461 FSD1Q9BTV5 496 aa14.1□□□□□ -0.15
CUX1-207ENST00000465461 PUS7LQ9H0K6 701 aaKnown RBP14.1□□□□□ -0.15
CUX1-207ENST00000465461 PALD1Q9ULE6 856 aa14.1□□□□□ -0.15
CUX1-207ENST00000465461 FLT1P17948 1338 aa14.1□□□□□ -0.15
CUX1-207ENST00000465461 CDK5RAP2Q96SN8 1893 aa14.1□□□□□ -0.15
CUX1-207ENST00000465461 RPAP1Q9BWH6 1393 aaPredicted RBP14.09□□□□□ -0.15
CUX1-207ENST00000465461 RNF113AO15541 343 aaKnown RBP14.09□□□□□ -0.15
CUX1-207ENST00000465461 IGSF3O75054 1194 aa14.09□□□□□ -0.15
CUX1-207ENST00000465461 MBD4O95243 580 aa14.09□□□□□ -0.15
CUX1-207ENST00000465461 NEFLP07196 543 aa14.09□□□□□ -0.15
CUX1-207ENST00000465461 ECE1P42892 770 aa14.09□□□□□ -0.15
CUX1-207ENST00000465461 USP5P45974 858 aa14.09□□□□□ -0.15
CUX1-207ENST00000465461 UBE3CQ15386 1083 aa14.09□□□□□ -0.15
CUX1-207ENST00000465461 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.09□□□□□ -0.15
CUX1-207ENST00000465461 SDR42E1Q8WUS8 393 aa14.09□□□□□ -0.15
CUX1-207ENST00000465461 CNKSR2Q8WXI2 1034 aa14.09□□□□□ -0.15
CUX1-207ENST00000465461 ZKSCAN4Q969J2 545 aaPredicted RBP14.09□□□□□ -0.15
CUX1-207ENST00000465461 ELP3Q9H9T3 547 aa14.09□□□□□ -0.15
CUX1-207ENST00000465461 MYH7P12883 1935 aa14.09□□□□□ -0.15
CUX1-207ENST00000465461 TRIM6-TRIM34B2RNG4 842 aa14.08□□□□□ -0.16
CUX1-207ENST00000465461 SLC10A3P09131 477 aa14.08□□□□□ -0.16
CUX1-207ENST00000465461 INPP5BP32019 993 aa14.08□□□□□ -0.16
CUX1-207ENST00000465461 MAP3K9P80192 1104 aa14.08□□□□□ -0.16
CUX1-207ENST00000465461 KIF23Q02241 960 aaPredicted RBP14.08□□□□□ -0.16
CUX1-207ENST00000465461 EVX2Q03828 476 aa14.08□□□□□ -0.16
CUX1-207ENST00000465461 ZSCAN25Q6NSZ9 544 aa14.08□□□□□ -0.16
CUX1-207ENST00000465461 JMYQ8N9B5 988 aa14.08□□□□□ -0.16
CUX1-207ENST00000465461 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.08□□□□□ -0.16
CUX1-207ENST00000465461 OSBP2Q969R2 916 aa14.08□□□□□ -0.16
CUX1-207ENST00000465461 RILPL2Q969X0 211 aa14.08□□□□□ -0.16
CUX1-207ENST00000465461 SLC10A4Q96EP9 437 aa14.08□□□□□ -0.16
CUX1-207ENST00000465461 WRNIP1Q96S55 665 aa14.08□□□□□ -0.16
CUX1-207ENST00000465461 SEC62Q99442 399 aaKnown RBP14.08□□□□□ -0.16
CUX1-207ENST00000465461 ZNF341Q9BYN7 854 aa14.08□□□□□ -0.16
CUX1-207ENST00000465461 ATRNL1Q5VV63 1379 aa14.08□□□□□ -0.16
CUX1-207ENST00000465461 OTOFQ9HC10 1997 aa14.07□□□□□ -0.16
CUX1-207ENST00000465461 M0R2C6 588 aa14.07□□□□□ -0.16
CUX1-207ENST00000465461 NPM3O75607 178 aaKnown RBP14.07□□□□□ -0.16
CUX1-207ENST00000465461 GJA5P36382 358 aa14.07□□□□□ -0.16
CUX1-207ENST00000465461 VGLL4Q14135 290 aa14.07□□□□□ -0.16
CUX1-207ENST00000465461 DCAF15Q66K64 600 aa14.07□□□□□ -0.16
CUX1-207ENST00000465461 ANKRD13AQ8IZ07 590 aa14.07□□□□□ -0.16
CUX1-207ENST00000465461 CCDC102AQ96A19 550 aa14.07□□□□□ -0.16
CUX1-207ENST00000465461 FOCADQ5VW36 1801 aa14.06□□□□□ -0.16
CUX1-207ENST00000465461 APPBP2Q92624 585 aa14.06□□□□□ -0.16
CUX1-207ENST00000465461 AIDAQ96BJ3 306 aa14.06□□□□□ -0.16
CUX1-207ENST00000465461 EVI5LQ96CN4 794 aa14.06□□□□□ -0.16
CUX1-207ENST00000465461 HOOK2Q96ED9 719 aa14.06□□□□□ -0.16
CUX1-207ENST00000465461 CRNKL1Q9BZJ0 848 aaKnown RBP14.06□□□□□ -0.16
CUX1-207ENST00000465461 OSBPL3Q9H4L5 887 aa14.06□□□□□ -0.16
CUX1-207ENST00000465461 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.06□□□□□ -0.16
CUX1-207ENST00000465461 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.06□□□□□ -0.16
CUX1-207ENST00000465461 PHF20L1A8MW92 1017 aa14.05□□□□□ -0.16
CUX1-207ENST00000465461 SMIM22K7EJ46 135 aa14.05□□□□□ -0.16
CUX1-207ENST00000465461 CYP2D6P10635 497 aa14.05□□□□□ -0.16
CUX1-207ENST00000465461 MAPK8IP2Q13387 824 aaPredicted RBP14.05□□□□□ -0.16
CUX1-207ENST00000465461 RRP1BQ14684 758 aaKnown RBP14.05□□□□□ -0.16
CUX1-207ENST00000465461 SPRYD7Q5W111 196 aa14.05□□□□□ -0.16
CUX1-207ENST00000465461 TMED8Q6PL24 325 aaPredicted RBP14.05□□□□□ -0.16
CUX1-207ENST00000465461 CCDC129Q6ZRS4 1044 aa14.05□□□□□ -0.16
CUX1-207ENST00000465461 OPTNQ96CV9 577 aa14.05□□□□□ -0.16
CUX1-207ENST00000465461 WNK4Q96J92 1243 aa14.05□□□□□ -0.16
CUX1-207ENST00000465461 CCDC136Q96JN2 1154 aa14.05□□□□□ -0.16
CUX1-207ENST00000465461 MCM9Q9NXL9 1143 aa14.05□□□□□ -0.16
CUX1-207ENST00000465461 ZNF112Q9UJU3 913 aa14.05□□□□□ -0.16
CUX1-207ENST00000465461 CSADQ9Y600 493 aa14.05□□□□□ -0.16
CUX1-207ENST00000465461 SNCAIPQ9Y6H5 919 aa14.05□□□□□ -0.16
CUX1-207ENST00000465461 SLC4A4Q9Y6R1 1079 aa14.05□□□□□ -0.16
CUX1-207ENST00000465461 SIPA1L1O43166 1804 aa14.05□□□□□ -0.16
CUX1-207ENST00000465461 CEP350Q5VT06 3117 aa14.05□□□□□ -0.16
CUX1-207ENST00000465461 MYH1P12882 1939 aa14.04□□□□□ -0.16
CUX1-207ENST00000465461 ZFYP08048 801 aaPredicted RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms