RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 DCAF15Q66K64 600 aa15.88■□□□□ 0.13
COL28A1-206ENST00000465339 CDAN1Q8IWY9 1227 aa15.88■□□□□ 0.13
COL28A1-206ENST00000465339 ZIC5Q96T25 663 aa15.88■□□□□ 0.13
COL28A1-206ENST00000465339 BCL11AQ9H165 835 aa15.88■□□□□ 0.13
COL28A1-206ENST00000465339 PIH1D3Q9NQM4 214 aaKnown RBP15.88■□□□□ 0.13
COL28A1-206ENST00000465339 DOCK2Q92608 1830 aa15.87■□□□□ 0.13
COL28A1-206ENST00000465339 PLCG2P16885 1265 aa15.87■□□□□ 0.13
COL28A1-206ENST00000465339 ATP5JP18859 108 aa15.87■□□□□ 0.13
COL28A1-206ENST00000465339 RGS3P49796 1198 aa15.87■□□□□ 0.13
COL28A1-206ENST00000465339 RHBDL3P58872 404 aa15.87■□□□□ 0.13
COL28A1-206ENST00000465339 PPP4CP60510 307 aa15.87■□□□□ 0.13
COL28A1-206ENST00000465339 MAP3K9P80192 1104 aa15.87■□□□□ 0.13
COL28A1-206ENST00000465339 MAP3K12Q12852 859 aa15.87■□□□□ 0.13
COL28A1-206ENST00000465339 IFNLR1Q8IU57 520 aaPredicted RBP15.87■□□□□ 0.13
COL28A1-206ENST00000465339 SUPT16HQ9Y5B9 1047 aaKnown RBP15.87■□□□□ 0.13
COL28A1-206ENST00000465339 SMARCA5O60264 1052 aaPredicted RBP15.86■□□□□ 0.13
COL28A1-206ENST00000465339 WDHD1O75717 1129 aaPredicted RBP15.86■□□□□ 0.13
COL28A1-206ENST00000465339 IDH1O75874 414 aaKnown RBP15.86■□□□□ 0.13
COL28A1-206ENST00000465339 SPRYD7Q5W111 196 aa15.86■□□□□ 0.13
COL28A1-206ENST00000465339 CLMNQ96JQ2 1002 aa15.86■□□□□ 0.13
COL28A1-206ENST00000465339 CSRNP1Q96S65 589 aa15.86■□□□□ 0.13
COL28A1-206ENST00000465339 ZBTB48P10074 688 aaPredicted RBP15.85■□□□□ 0.13
COL28A1-206ENST00000465339 CYP7A1P22680 504 aa15.85■□□□□ 0.13
COL28A1-206ENST00000465339 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.85■□□□□ 0.13
COL28A1-206ENST00000465339 CERS3Q8IU89 383 aa15.85■□□□□ 0.13
COL28A1-206ENST00000465339 ZFPM1Q8IX07 1006 aa15.85■□□□□ 0.13
COL28A1-206ENST00000465339 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.85■□□□□ 0.13
COL28A1-206ENST00000465339 ZNF341Q9BYN7 854 aa15.85■□□□□ 0.13
COL28A1-206ENST00000465339 ANTXR1Q9H6X2 564 aa15.85■□□□□ 0.13
COL28A1-206ENST00000465339 NDUFB9Q9Y6M9 179 aa15.85■□□□□ 0.13
COL28A1-206ENST00000465339 OTOFQ9HC10 1997 aa15.85■□□□□ 0.13
COL28A1-206ENST00000465339 RFX7Q2KHR2 1363 aa15.85■□□□□ 0.13
COL28A1-206ENST00000465339 TM4SF4P48230 202 aa15.84■□□□□ 0.13
COL28A1-206ENST00000465339 INHBEP58166 350 aa15.84■□□□□ 0.13
COL28A1-206ENST00000465339 SREBF2Q12772 1141 aa15.84■□□□□ 0.13
COL28A1-206ENST00000465339 PICALMQ13492 652 aa15.84■□□□□ 0.13
COL28A1-206ENST00000465339 HDAC1Q13547 482 aaPredicted RBP15.84■□□□□ 0.13
COL28A1-206ENST00000465339 MIGA2Q7L4E1 593 aa15.84■□□□□ 0.13
COL28A1-206ENST00000465339 ZSCAN29Q8IWY8 852 aaPredicted RBP15.84■□□□□ 0.13
COL28A1-206ENST00000465339 WNK4Q96J92 1243 aa15.84■□□□□ 0.13
COL28A1-206ENST00000465339 PRDM10Q9NQV6 1147 aa15.84■□□□□ 0.13
COL28A1-206ENST00000465339 AATFQ9NY61 560 aaKnown RBP eCLIP15.84■□□□□ 0.13
COL28A1-206ENST00000465339 CSADQ9Y600 493 aa15.84■□□□□ 0.13
COL28A1-206ENST00000465339 LAMB1P07942 1786 aa15.83■□□□□ 0.12
COL28A1-206ENST00000465339 GOLIM4O00461 696 aa15.83■□□□□ 0.12
COL28A1-206ENST00000465339 CD44P16070 742 aaKnown RBP15.83■□□□□ 0.12
COL28A1-206ENST00000465339 ADGRA1Q86SQ6 560 aa15.83■□□□□ 0.12
COL28A1-206ENST00000465339 TEX11Q8IYF3 940 aa15.83■□□□□ 0.12
COL28A1-206ENST00000465339 MAGEB6Q8N7X4 407 aa15.83■□□□□ 0.12
COL28A1-206ENST00000465339 SH3RF3Q8TEJ3 882 aaPredicted RBP15.83■□□□□ 0.12
COL28A1-206ENST00000465339 GCC1Q96CN9 775 aa15.83■□□□□ 0.12
COL28A1-206ENST00000465339 GPATCH3Q96I76 525 aa15.83■□□□□ 0.12
COL28A1-206ENST00000465339 WRNIP1Q96S55 665 aa15.83■□□□□ 0.12
COL28A1-206ENST00000465339 DNAJC2Q99543 621 aaKnown RBP15.83■□□□□ 0.12
COL28A1-206ENST00000465339 HAUS7Q99871 368 aa15.83■□□□□ 0.12
COL28A1-206ENST00000465339 BOLA2Q9H3K6 86 aa15.83■□□□□ 0.12
COL28A1-206ENST00000465339 DDX4Q9NQI0 724 aaKnown RBP15.83■□□□□ 0.12
COL28A1-206ENST00000465339 ECHDC1Q9NTX5 307 aa15.83■□□□□ 0.12
COL28A1-206ENST00000465339 PAG1Q9NWQ8 432 aa15.83■□□□□ 0.12
COL28A1-206ENST00000465339 SAGE1Q9NXZ1 904 aa15.83■□□□□ 0.12
COL28A1-206ENST00000465339 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.83■□□□□ 0.12
COL28A1-206ENST00000465339 ZBTB47Q9UFB7 747 aaPredicted RBP15.83■□□□□ 0.12
COL28A1-206ENST00000465339 ZNF112Q9UJU3 913 aa15.83■□□□□ 0.12
COL28A1-206ENST00000465339 CDK5RAP2Q96SN8 1893 aa15.82■□□□□ 0.12
COL28A1-206ENST00000465339 MANSC4A6NHS7 340 aaPredicted RBP15.82■□□□□ 0.12
COL28A1-206ENST00000465339 HSPA8P11142 646 aaKnown RBP15.82■□□□□ 0.12
COL28A1-206ENST00000465339 LBX1P52954 281 aa15.82■□□□□ 0.12
COL28A1-206ENST00000465339 MAP3K10Q02779 954 aa15.82■□□□□ 0.12
COL28A1-206ENST00000465339 MKRN3Q13064 507 aaKnown RBP15.82■□□□□ 0.12
COL28A1-206ENST00000465339 VGLL4Q14135 290 aa15.82■□□□□ 0.12
COL28A1-206ENST00000465339 SH3BP5LQ7L8J4 393 aa15.82■□□□□ 0.12
COL28A1-206ENST00000465339 RWDD1Q9H446 243 aaPredicted RBP15.82■□□□□ 0.12
COL28A1-206ENST00000465339 ELP3Q9H9T3 547 aa15.82■□□□□ 0.12
COL28A1-206ENST00000465339 RNF186Q9NXI6 227 aa15.82■□□□□ 0.12
COL28A1-206ENST00000465339 COL2A1P02458 1487 aaPredicted RBP15.82■□□□□ 0.12
COL28A1-206ENST00000465339 FOCADQ5VW36 1801 aa15.82■□□□□ 0.12
COL28A1-206ENST00000465339 DDTLA6NHG4 134 aaPredicted RBP15.81■□□□□ 0.12
COL28A1-206ENST00000465339 SLC9C2Q5TAH2 1124 aa15.81■□□□□ 0.12
COL28A1-206ENST00000465339 ATRNL1Q5VV63 1379 aa15.81■□□□□ 0.12
COL28A1-206ENST00000465339 EXOC6Q8TAG9 804 aa15.81■□□□□ 0.12
COL28A1-206ENST00000465339 OPTNQ96CV9 577 aa15.81■□□□□ 0.12
COL28A1-206ENST00000465339 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.81■□□□□ 0.12
COL28A1-206ENST00000465339 OSBPL5Q9H0X9 879 aaPredicted RBP15.81■□□□□ 0.12
COL28A1-206ENST00000465339 TBC1D12O60347 775 aa15.8■□□□□ 0.12
COL28A1-206ENST00000465339 TRPA1O75762 1119 aa15.8■□□□□ 0.12
COL28A1-206ENST00000465339 ERO1BQ86YB8 467 aa15.8■□□□□ 0.12
COL28A1-206ENST00000465339 ZKSCAN4Q969J2 545 aaPredicted RBP15.8■□□□□ 0.12
COL28A1-206ENST00000465339 DHX36Q9H2U1 1008 aaKnown RBP15.8■□□□□ 0.12
COL28A1-206ENST00000465339 MYH7P12883 1935 aa15.8■□□□□ 0.12
COL28A1-206ENST00000465339 TTC41PQ6P2S7 1318 aa15.79■□□□□ 0.12
COL28A1-206ENST00000465339 SPDYE5A6NIY4 337 aa15.79■□□□□ 0.12
COL28A1-206ENST00000465339 PDE6AP16499 860 aa15.79■□□□□ 0.12
COL28A1-206ENST00000465339 DYNLL1P63167 89 aaKnown RBP15.79■□□□□ 0.12
COL28A1-206ENST00000465339 COL13A1Q5TAT6 717 aaPredicted RBP15.79■□□□□ 0.12
COL28A1-206ENST00000465339 ANKRD45Q5TZF3 282 aa15.79■□□□□ 0.12
COL28A1-206ENST00000465339 MIGA1Q8NAN2 632 aa15.79■□□□□ 0.12
COL28A1-206ENST00000465339 TGFBRAP1Q8WUH2 860 aa15.79■□□□□ 0.12
COL28A1-206ENST00000465339 EDC3Q96F86 508 aaKnown RBP15.79■□□□□ 0.12
COL28A1-206ENST00000465339 SNCAIPQ9Y6H5 919 aa15.79■□□□□ 0.12
COL28A1-206ENST00000465339 ZNF532Q9HCE3 1301 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms