RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 ERICH4A6NGS2 130 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 PPFIA4O75335 1185 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 GNA11P29992 359 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 KRT2P35908 639 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 POSTNQ15063 836 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 MPRIPQ6WCQ1 1025 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 ARHGAP27Q6ZUM4 889 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 NEURL1BA8MQ27 555 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 ERVV-2B6SEH9 535 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 IDH1O75874 414 aaKnown RBP7.94□□□□□ -1.14
SYNE1-216ENST00000461872 TSHZ3Q63HK5 1081 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 WWC2Q6AWC2 1192 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 VSTM4Q8IW00 320 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 ENOX1Q8TC92 643 aaKnown RBP7.94□□□□□ -1.14
SYNE1-216ENST00000461872 WDHD1O75717 1129 aaPredicted RBP7.94□□□□□ -1.14
SYNE1-216ENST00000461872 MYL6BP14649 208 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 RUFY4Q6ZNE9 571 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 EFCAB13Q8IY85 973 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 ZNF830Q96NB3 372 aaPredicted RBP7.94□□□□□ -1.14
SYNE1-216ENST00000461872 hCG_1984214I3L0E3 225 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 NBPF14Q5TI25 921 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 ZNF713Q8N859 430 aaPredicted RBP7.94□□□□□ -1.14
SYNE1-216ENST00000461872 SLC52A2Q9HAB3 445 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 STRN4Q9NRL3 753 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 LRP2BPQ9P2M1 347 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 RASAL2Q9UJF2 1139 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 CDC23Q9UJX2 597 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 IGSF22Q8N9C0 903 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 TMOD3Q9NYL9 352 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 PDE4CQ08493 712 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 NCBP1Q09161 790 aaKnown RBP7.94□□□□□ -1.14
SYNE1-216ENST00000461872 NOSTRINQ8IVI9 506 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 XPO4Q9C0E2 1151 aaKnown RBP7.94□□□□□ -1.14
SYNE1-216ENST00000461872 PLCG2P16885 1265 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 RESTQ13127 1097 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 MUM1L1Q5H9M0 696 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 SMARCC2Q8TAQ2 1214 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 RBM33Q96EV2 1170 aaKnown RBP7.94□□□□□ -1.14
SYNE1-216ENST00000461872 L2HGDHQ9H9P8 463 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 UTYO14607 1347 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 GBP2P32456 591 aaPredicted RBP7.94□□□□□ -1.14
SYNE1-216ENST00000461872 SLMAPQ14BN4 828 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 ERMNQ8TAM6 284 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 CCDC42Q96M95 316 aa7.94□□□□□ -1.14
SYNE1-216ENST00000461872 BICDL1Q6ZP65 573 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 DDX46Q7L014 1031 aaKnown RBP7.93□□□□□ -1.14
SYNE1-216ENST00000461872 IFT20Q8IY31 132 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 PRDM11Q9NQV5 511 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 EXOC1Q9NV70 894 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 HDAC9Q9UKV0 1011 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 SALL3Q9BXA9 1300 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 PARP10Q53GL7 1025 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 KRBA2Q6ZNG9 492 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 CDCA7Q9BWT1 371 aaPredicted RBP7.93□□□□□ -1.14
SYNE1-216ENST00000461872 NR1I2O75469 434 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 CCT2P78371 535 aaKnown RBP7.93□□□□□ -1.14
SYNE1-216ENST00000461872 CACNA2D4Q7Z3S7 1137 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 SETD1BQ9UPS6 1966 aaKnown RBP7.93□□□□□ -1.14
SYNE1-216ENST00000461872 H7C1D1 291 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 GNA14O95837 355 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 EZRP15311 586 aaKnown RBP7.93□□□□□ -1.14
SYNE1-216ENST00000461872 COPS6Q7L5N1 327 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 HNRNPLLQ8WVV9 542 aaKnown RBP7.93□□□□□ -1.14
SYNE1-216ENST00000461872 TCEAL9Q9UHQ7 104 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 NFE2L3Q9Y4A8 694 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 CEMIPQ8WUJ3 1361 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 MICU3Q86XE3 530 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 CRNKL1Q9BZJ0 848 aaKnown RBP7.93□□□□□ -1.14
SYNE1-216ENST00000461872 E7EWF7 191 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 AKR1B10O60218 316 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 CNNM4Q6P4Q7 775 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 SRGAP1Q7Z6B7 1085 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 LINC00301Q8NCQ3 95 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 PPP1R13BQ96KQ4 1090 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 C19orf44Q9H6X5 657 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 PCDHA7Q9UN72 937 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 RICTORQ6R327 1708 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 TSPOAP1O95153 1857 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 ANO9A1A5B4 782 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 SPDYE4A6NLX3 237 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 BAG3O95817 575 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 TCP1P17987 556 aaKnown RBP7.93□□□□□ -1.14
SYNE1-216ENST00000461872 GLE1Q53GS7 698 aaKnown RBP7.93□□□□□ -1.14
SYNE1-216ENST00000461872 SPATA1Q5VX52 437 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 LMBR1LQ6UX01 489 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 USP37Q86T82 979 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 RASEFQ8IZ41 740 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 PPP2R2CQ9Y2T4 447 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 METP08581 1390 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 C3P01024 1663 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 GOLGA8KD6RF30 607 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 CCDC170Q8IYT3 715 aa7.93□□□□□ -1.14
SYNE1-216ENST00000461872 TARSL2A2RTX5 802 aaKnown RBP7.92□□□□□ -1.14
SYNE1-216ENST00000461872 CCDC152Q4G0S7 254 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 ARHGEF25Q86VW2 580 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 NSUN7Q8NE18 718 aaKnown RBP7.92□□□□□ -1.14
SYNE1-216ENST00000461872 FBXW7Q969H0 707 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 ZSCAN26Q16670 478 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 HOOK3Q86VS8 718 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 TRIM47Q96LD4 638 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms