RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 WDHD1O75717 1129 aaPredicted RBP21.14■□□□□ 0.97
USP39-208ENST00000455732 DCAF15Q66K64 600 aa21.14■□□□□ 0.97
USP39-208ENST00000455732 NPM3O75607 178 aaKnown RBP21.13■□□□□ 0.97
USP39-208ENST00000455732 TBC1D8O95759 1140 aa21.13■□□□□ 0.97
USP39-208ENST00000455732 RGS3P49796 1198 aa21.13■□□□□ 0.97
USP39-208ENST00000455732 NAA16Q6N069 864 aaPredicted RBP21.13■□□□□ 0.97
USP39-208ENST00000455732 MIGA2Q7L4E1 593 aa21.13■□□□□ 0.97
USP39-208ENST00000455732 IFNL1Q8IU54 200 aa21.13■□□□□ 0.97
USP39-208ENST00000455732 CNKSR2Q8WXI2 1034 aa21.13■□□□□ 0.97
USP39-208ENST00000455732 WRNIP1Q96S55 665 aa21.13■□□□□ 0.97
USP39-208ENST00000455732 CSADQ9Y600 493 aa21.13■□□□□ 0.97
USP39-208ENST00000455732 SNCAIPQ9Y6H5 919 aa21.13■□□□□ 0.97
USP39-208ENST00000455732 ATRNL1Q5VV63 1379 aa21.12■□□□□ 0.97
USP39-208ENST00000455732 TESPA1A2RU30 521 aaPredicted RBP21.12■□□□□ 0.97
USP39-208ENST00000455732 IGF2BP3O00425 579 aaKnown RBP eCLIP21.12■□□□□ 0.97
USP39-208ENST00000455732 ATP5JP18859 108 aa21.12■□□□□ 0.97
USP39-208ENST00000455732 DGKZQ13574 1117 aa21.12■□□□□ 0.97
USP39-208ENST00000455732 NOM1Q5C9Z4 860 aaKnown RBP21.12■□□□□ 0.97
USP39-208ENST00000455732 MS4A4AQ96JQ5 239 aa21.12■□□□□ 0.97
USP39-208ENST00000455732 ZNF341Q9BYN7 854 aa21.12■□□□□ 0.97
USP39-208ENST00000455732 DDX4Q9NQI0 724 aaKnown RBP21.12■□□□□ 0.97
USP39-208ENST00000455732 ZNF112Q9UJU3 913 aa21.12■□□□□ 0.97
USP39-208ENST00000455732 FOCADQ5VW36 1801 aa21.12■□□□□ 0.97
USP39-208ENST00000455732 SPDYE5A6NIY4 337 aa21.11■□□□□ 0.97
USP39-208ENST00000455732 SMARCA5O60264 1052 aaPredicted RBP21.11■□□□□ 0.97
USP39-208ENST00000455732 ALDH1A1P00352 501 aa21.11■□□□□ 0.97
USP39-208ENST00000455732 PPP4CP60510 307 aa21.11■□□□□ 0.97
USP39-208ENST00000455732 HDAC1Q13547 482 aaPredicted RBP21.11■□□□□ 0.97
USP39-208ENST00000455732 TTF1Q15361 905 aaPredicted RBP21.11■□□□□ 0.97
USP39-208ENST00000455732 SH3BP5LQ7L8J4 393 aa21.11■□□□□ 0.97
USP39-208ENST00000455732 ZKSCAN4Q969J2 545 aaPredicted RBP21.11■□□□□ 0.97
USP39-208ENST00000455732 R3HDMLQ9H3Y0 253 aa21.11■□□□□ 0.97
USP39-208ENST00000455732 ANTXR1Q9H6X2 564 aa21.11■□□□□ 0.97
USP39-208ENST00000455732 NDUFB9Q9Y6M9 179 aa21.11■□□□□ 0.97
USP39-208ENST00000455732 COL2A1P02458 1487 aaPredicted RBP21.1■□□□□ 0.97
USP39-208ENST00000455732 IDH1O75874 414 aaKnown RBP21.1■□□□□ 0.97
USP39-208ENST00000455732 MAP3K12Q12852 859 aa21.1■□□□□ 0.97
USP39-208ENST00000455732 PTPN18Q99952 460 aa21.1■□□□□ 0.97
USP39-208ENST00000455732 NOL10Q9BSC4 688 aaKnown RBP21.1■□□□□ 0.97
USP39-208ENST00000455732 BAG3O95817 575 aa21.09■□□□□ 0.97
USP39-208ENST00000455732 PLCG2P16885 1265 aa21.09■□□□□ 0.97
USP39-208ENST00000455732 INPP5BP32019 993 aa21.09■□□□□ 0.97
USP39-208ENST00000455732 ADGRA1Q86SQ6 560 aa21.09■□□□□ 0.97
USP39-208ENST00000455732 ERO1BQ86YB8 467 aa21.09■□□□□ 0.97
USP39-208ENST00000455732 SUPT16HQ9Y5B9 1047 aaKnown RBP21.09■□□□□ 0.97
USP39-208ENST00000455732 DDTLA6NHG4 134 aaPredicted RBP21.08■□□□□ 0.97
USP39-208ENST00000455732 GPR25O00155 361 aa21.08■□□□□ 0.97
USP39-208ENST00000455732 MAP3K10Q02779 954 aa21.08■□□□□ 0.97
USP39-208ENST00000455732 CERS3Q8IU89 383 aa21.08■□□□□ 0.97
USP39-208ENST00000455732 ZNF296Q8WUU4 475 aaPredicted RBP21.08■□□□□ 0.97
USP39-208ENST00000455732 OTUD5Q96G74 571 aa21.08■□□□□ 0.97
USP39-208ENST00000455732 CYP7A1P22680 504 aa21.07■□□□□ 0.96
USP39-208ENST00000455732 GTF2A2P52657 109 aa21.07■□□□□ 0.96
USP39-208ENST00000455732 PICALMQ13492 652 aa21.07■□□□□ 0.96
USP39-208ENST00000455732 MAGEB6Q8N7X4 407 aa21.07■□□□□ 0.96
USP39-208ENST00000455732 DNAJC2Q99543 621 aaKnown RBP21.07■□□□□ 0.96
USP39-208ENST00000455732 HAUS7Q99871 368 aa21.07■□□□□ 0.96
USP39-208ENST00000455732 BCL11AQ9H165 835 aa21.07■□□□□ 0.96
USP39-208ENST00000455732 ECHDC1Q9NTX5 307 aa21.07■□□□□ 0.96
USP39-208ENST00000455732 AATFQ9NY61 560 aaKnown RBP eCLIP21.07■□□□□ 0.96
USP39-208ENST00000455732 DOCK1Q14185 1865 aa21.07■□□□□ 0.96
USP39-208ENST00000455732 SIPA1L1O43166 1804 aa21.06■□□□□ 0.96
USP39-208ENST00000455732 PHF20L1A8MW92 1017 aa21.06■□□□□ 0.96
USP39-208ENST00000455732 GOLIM4O00461 696 aa21.06■□□□□ 0.96
USP39-208ENST00000455732 MLLT1Q03111 559 aaPredicted RBP21.06■□□□□ 0.96
USP39-208ENST00000455732 NOL9Q5SY16 702 aaKnown RBP21.06■□□□□ 0.96
USP39-208ENST00000455732 TEX11Q8IYF3 940 aa21.06■□□□□ 0.96
USP39-208ENST00000455732 SH3RF3Q8TEJ3 882 aaPredicted RBP21.06■□□□□ 0.96
USP39-208ENST00000455732 BRI3BPQ8WY22 251 aa21.06■□□□□ 0.96
USP39-208ENST00000455732 GCC1Q96CN9 775 aa21.06■□□□□ 0.96
USP39-208ENST00000455732 GPATCH3Q96I76 525 aa21.06■□□□□ 0.96
USP39-208ENST00000455732 PHIPQ8WWQ0 1821 aa21.06■□□□□ 0.96
USP39-208ENST00000455732 PTPRFP10586 1907 aa21.06■□□□□ 0.96
USP39-208ENST00000455732 IRF6O14896 467 aa21.05■□□□□ 0.96
USP39-208ENST00000455732 PPATQ06203 517 aa21.05■□□□□ 0.96
USP39-208ENST00000455732 PPIL2Q13356 520 aa21.05■□□□□ 0.96
USP39-208ENST00000455732 OTUD7BQ6GQQ9 843 aa21.05■□□□□ 0.96
USP39-208ENST00000455732 ZSCAN29Q8IWY8 852 aaPredicted RBP21.05■□□□□ 0.96
USP39-208ENST00000455732 EXOC6Q8TAG9 804 aa21.05■□□□□ 0.96
USP39-208ENST00000455732 OSBPL5Q9H0X9 879 aaPredicted RBP21.05■□□□□ 0.96
USP39-208ENST00000455732 BOLA2Q9H3K6 86 aa21.05■□□□□ 0.96
USP39-208ENST00000455732 PAG1Q9NWQ8 432 aa21.05■□□□□ 0.96
USP39-208ENST00000455732 ATAD5Q96QE3 1844 aa21.04■□□□□ 0.96
USP39-208ENST00000455732 CCL15-CCL14A0A0B4J2E2 113 aa21.04■□□□□ 0.96
USP39-208ENST00000455732 SLURP2P0DP57 97 aa21.04■□□□□ 0.96
USP39-208ENST00000455732 CCL15Q16663 113 aa21.04■□□□□ 0.96
USP39-208ENST00000455732 CTU1Q7Z7A3 348 aaKnown RBP21.04■□□□□ 0.96
USP39-208ENST00000455732 PDE6AP16499 860 aa21.03■□□□□ 0.96
USP39-208ENST00000455732 CRHR2Q13324 411 aa21.03■□□□□ 0.96
USP39-208ENST00000455732 MYH1P12882 1939 aa21.03■□□□□ 0.96
USP39-208ENST00000455732 TBC1D12O60347 775 aa21.02■□□□□ 0.96
USP39-208ENST00000455732 FKTNO75072 461 aa21.02■□□□□ 0.96
USP39-208ENST00000455732 SNAPC2Q13487 334 aa21.02■□□□□ 0.96
USP39-208ENST00000455732 SLC9C2Q5TAH2 1124 aa21.02■□□□□ 0.96
USP39-208ENST00000455732 FAM43AQ8N2R8 423 aa21.02■□□□□ 0.96
USP39-208ENST00000455732 EDC3Q96F86 508 aaKnown RBP21.02■□□□□ 0.96
USP39-208ENST00000455732 FLT1P17948 1338 aa21.02■□□□□ 0.95
USP39-208ENST00000455732 TTC41PQ6P2S7 1318 aa21.02■□□□□ 0.95
USP39-208ENST00000455732 TCRBV5S4A2TA0A5A2 114 aa21.01■□□□□ 0.95
USP39-208ENST00000455732 CETPP11597 493 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms