RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 ARMC9Q7Z3E5 817 aa33.82■■■■□ 3
SMARCC1-203ENST00000454240 MKRN1Q9UHC7 482 aaKnown RBP33.82■■■■□ 3
SMARCC1-203ENST00000454240 FZD1Q9UP38 647 aa33.82■■■■□ 3
SMARCC1-203ENST00000454240 TTLL12Q14166 644 aaPredicted RBP33.81■■■■□ 3
SMARCC1-203ENST00000454240 SH3BP5LQ7L8J4 393 aa33.81■■■■□ 3
SMARCC1-203ENST00000454240 TGFBRAP1Q8WUH2 860 aa33.81■■■■□ 3
SMARCC1-203ENST00000454240 UBE2Q2LH0YL09 131 aa33.8■■■■□ 3
SMARCC1-203ENST00000454240 USP2O75604 605 aaPredicted RBP33.8■■■■□ 3
SMARCC1-203ENST00000454240 ZFYP08048 801 aaPredicted RBP33.8■■■■□ 3
SMARCC1-203ENST00000454240 EVI5LQ96CN4 794 aa33.8■■■■□ 3
SMARCC1-203ENST00000454240 HOOK2Q96ED9 719 aa33.8■■■■□ 3
SMARCC1-203ENST00000454240 CCDC136Q96JN2 1154 aa33.8■■■■□ 3
SMARCC1-203ENST00000454240 OSBPL5Q9H0X9 879 aaPredicted RBP33.8■■■■□ 3
SMARCC1-203ENST00000454240 ANGEL1Q9UNK9 670 aaKnown RBP33.8■■■■□ 3
SMARCC1-203ENST00000454240 COL2A1P02458 1487 aaPredicted RBP33.8■■■■□ 3
SMARCC1-203ENST00000454240 RNF113AO15541 343 aaKnown RBP33.79■■■■□ 3
SMARCC1-203ENST00000454240 KLRG1Q96E93 195 aa33.79■■■■□ 3
SMARCC1-203ENST00000454240 ATRNL1Q5VV63 1379 aa33.78■■■■□ 3
SMARCC1-203ENST00000454240 DDTLA6NHG4 134 aaPredicted RBP33.78■■■■□ 3
SMARCC1-203ENST00000454240 LRRFIP1Q32MZ4 808 aaKnown RBP33.78■■■■□ 3
SMARCC1-203ENST00000454240 LDLRAD1Q5T700 205 aa33.78■■■■□ 3
SMARCC1-203ENST00000454240 FSD1Q9BTV5 496 aa33.78■■■■□ 3
SMARCC1-203ENST00000454240 MYH1P12882 1939 aa33.77■■■■□ 3
SMARCC1-203ENST00000454240 FLT1P17948 1338 aa33.77■■■■□ 3
SMARCC1-203ENST00000454240 RGMBQ6NW40 437 aa33.76■■■□□ 2.99
SMARCC1-203ENST00000454240 MAPKAPK5Q8IW41 473 aa33.76■■■□□ 2.99
SMARCC1-203ENST00000454240 ZSCAN29Q8IWY8 852 aaPredicted RBP33.76■■■□□ 2.99
SMARCC1-203ENST00000454240 LCORLQ8N3X6 602 aa33.76■■■□□ 2.99
SMARCC1-203ENST00000454240 APPBP2Q92624 585 aa33.76■■■□□ 2.99
SMARCC1-203ENST00000454240 PUS7LQ9H0K6 701 aaKnown RBP33.76■■■□□ 2.99
SMARCC1-203ENST00000454240 OTOFQ9HC10 1997 aa33.76■■■□□ 2.99
SMARCC1-203ENST00000454240 IREB2P48200 963 aaKnown RBP33.75■■■□□ 2.99
SMARCC1-203ENST00000454240 VEGFBP49765 207 aa33.75■■■□□ 2.99
SMARCC1-203ENST00000454240 DCAF15Q66K64 600 aa33.75■■■□□ 2.99
SMARCC1-203ENST00000454240 CYP4F22Q6NT55 531 aa33.75■■■□□ 2.99
SMARCC1-203ENST00000454240 CSRNP1Q96S65 589 aa33.75■■■□□ 2.99
SMARCC1-203ENST00000454240 UNCXA6NJT0 531 aa33.74■■■□□ 2.99
SMARCC1-203ENST00000454240 MBD4O95243 580 aa33.74■■■□□ 2.99
SMARCC1-203ENST00000454240 MIGA2Q7L4E1 593 aa33.74■■■□□ 2.99
SMARCC1-203ENST00000454240 OSBP2Q969R2 916 aa33.74■■■□□ 2.99
SMARCC1-203ENST00000454240 CRNKL1Q9BZJ0 848 aaKnown RBP33.74■■■□□ 2.99
SMARCC1-203ENST00000454240 ARMT1Q9H993 441 aa33.74■■■□□ 2.99
SMARCC1-203ENST00000454240 USP5P45974 858 aa33.73■■■□□ 2.99
SMARCC1-203ENST00000454240 MAP3K10Q02779 954 aa33.73■■■□□ 2.99
SMARCC1-203ENST00000454240 TICAM2Q86XR7 235 aa33.73■■■□□ 2.99
SMARCC1-203ENST00000454240 CAPNS2Q96L46 248 aa33.73■■■□□ 2.99
SMARCC1-203ENST00000454240 TRIM6-TRIM34B2RNG4 842 aa33.72■■■□□ 2.99
SMARCC1-203ENST00000454240 ECE1P42892 770 aa33.72■■■□□ 2.99
SMARCC1-203ENST00000454240 ZNF157P51786 506 aaPredicted RBP33.72■■■□□ 2.99
SMARCC1-203ENST00000454240 PAXIP1Q6ZW49 1069 aaPredicted RBP33.72■■■□□ 2.99
SMARCC1-203ENST00000454240 DHX36Q9H2U1 1008 aaKnown RBP33.72■■■□□ 2.99
SMARCC1-203ENST00000454240 WDR33Q9C0J8 1336 aaKnown RBP33.72■■■□□ 2.99
SMARCC1-203ENST00000454240 SIPA1L1O43166 1804 aa33.72■■■□□ 2.99
SMARCC1-203ENST00000454240 DDX55Q8NHQ9 600 aaKnown RBP eCLIP33.71■■■□□ 2.99
SMARCC1-203ENST00000454240 AIDAQ96BJ3 306 aa33.71■■■□□ 2.99
SMARCC1-203ENST00000454240 ZNF341Q9BYN7 854 aa33.71■■■□□ 2.99
SMARCC1-203ENST00000454240 NAV1Q8NEY1 1877 aa33.71■■■□□ 2.99
SMARCC1-203ENST00000454240 DDX60LQ5H9U9 1706 aaKnown RBP33.7■■■□□ 2.99
SMARCC1-203ENST00000454240 ANKRD13AQ8IZ07 590 aa33.7■■■□□ 2.99
SMARCC1-203ENST00000454240 RILPL2Q969X0 211 aa33.7■■■□□ 2.99
SMARCC1-203ENST00000454240 PPP4R2Q9NY27 417 aa33.7■■■□□ 2.99
SMARCC1-203ENST00000454240 ZMYM1Q5SVZ6 1142 aa33.69■■■□□ 2.98
SMARCC1-203ENST00000454240 CCDC102AQ96A19 550 aa33.69■■■□□ 2.98
SMARCC1-203ENST00000454240 STRBPQ96SI9 672 aaKnown RBP33.69■■■□□ 2.98
SMARCC1-203ENST00000454240 ZNF112Q9UJU3 913 aa33.69■■■□□ 2.98
SMARCC1-203ENST00000454240 FAM155AB1AL88 458 aaPredicted RBP33.68■■■□□ 2.98
SMARCC1-203ENST00000454240 TBC1D12O60347 775 aa33.68■■■□□ 2.98
SMARCC1-203ENST00000454240 MAP3K9P80192 1104 aa33.68■■■□□ 2.98
SMARCC1-203ENST00000454240 TTC22Q5TAA0 569 aa33.68■■■□□ 2.98
SMARCC1-203ENST00000454240 PPP1R3FQ6ZSY5 799 aaPredicted RBP33.68■■■□□ 2.98
SMARCC1-203ENST00000454240 SDR42E1Q8WUS8 393 aa33.68■■■□□ 2.98
SMARCC1-203ENST00000454240 PI4KBQ9UBF8 816 aa33.68■■■□□ 2.98
SMARCC1-203ENST00000454240 PALD1Q9ULE6 856 aa33.68■■■□□ 2.98
SMARCC1-203ENST00000454240 PRKAB2O43741 272 aa33.67■■■□□ 2.98
SMARCC1-203ENST00000454240 SLC10A3P09131 477 aa33.67■■■□□ 2.98
SMARCC1-203ENST00000454240 RASAL3Q86YV0 1011 aa33.67■■■□□ 2.98
SMARCC1-203ENST00000454240 CLMNQ96JQ2 1002 aa33.67■■■□□ 2.98
SMARCC1-203ENST00000454240 SAP30BPQ9UHR5 308 aaKnown RBP33.67■■■□□ 2.98
SMARCC1-203ENST00000454240 BAZ2AQ9UIF9 1905 aaKnown RBP33.67■■■□□ 2.98
SMARCC1-203ENST00000454240 M0R2C6 588 aa33.66■■■□□ 2.98
SMARCC1-203ENST00000454240 SLURP2P0DP57 97 aa33.66■■■□□ 2.98
SMARCC1-203ENST00000454240 GSPT1P15170 499 aaKnown RBP33.66■■■□□ 2.98
SMARCC1-203ENST00000454240 GRM1Q13255 1194 aa33.66■■■□□ 2.98
SMARCC1-203ENST00000454240 WRNIP1Q96S55 665 aa33.66■■■□□ 2.98
SMARCC1-203ENST00000454240 SEC62Q99442 399 aaKnown RBP33.66■■■□□ 2.98
SMARCC1-203ENST00000454240 THSD7BQ9C0I4 1608 aa33.66■■■□□ 2.98
SMARCC1-203ENST00000454240 DCP1AQ9NPI6 582 aaPredicted RBP33.66■■■□□ 2.98
SMARCC1-203ENST00000454240 ATP8A2Q9NTI2 1148 aa33.66■■■□□ 2.98
SMARCC1-203ENST00000454240 METTL16Q86W50 562 aaKnown RBP33.65■■■□□ 2.98
SMARCC1-203ENST00000454240 JMYQ8N9B5 988 aa33.65■■■□□ 2.98
SMARCC1-203ENST00000454240 SLC10A4Q96EP9 437 aa33.65■■■□□ 2.98
SMARCC1-203ENST00000454240 PHF20L1A8MW92 1017 aa33.64■■■□□ 2.98
SMARCC1-203ENST00000454240 GPAA1O43292 621 aa33.64■■■□□ 2.98
SMARCC1-203ENST00000454240 VGLL4Q14135 290 aa33.64■■■□□ 2.98
SMARCC1-203ENST00000454240 SLC4A4Q9Y6R1 1079 aa33.64■■■□□ 2.98
SMARCC1-203ENST00000454240 FOXP4Q8IVH2 680 aaPredicted RBP33.63■■■□□ 2.97
SMARCC1-203ENST00000454240 HERC5Q9UII4 1024 aaKnown RBP33.63■■■□□ 2.97
SMARCC1-203ENST00000454240 PCNTO95613 3336 aa33.63■■■□□ 2.97
SMARCC1-203ENST00000454240 AOC2O75106 756 aa33.62■■■□□ 2.97
SMARCC1-203ENST00000454240 HLA-DOAP06340 250 aa33.62■■■□□ 2.97
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms