RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 GPRC5DQ9NZD1 345 aa10.62□□□□□ -0.71
SYNE1-214ENST00000454018 LRP2BPQ9P2M1 347 aa10.62□□□□□ -0.71
SYNE1-214ENST00000454018 LAMB1P07942 1786 aa10.62□□□□□ -0.71
SYNE1-214ENST00000454018 DDX60LQ5H9U9 1706 aaKnown RBP10.61□□□□□ -0.71
SYNE1-214ENST00000454018 BAZ2AQ9UIF9 1905 aaKnown RBP10.61□□□□□ -0.71
SYNE1-214ENST00000454018 C19orf67A6NJJ6 358 aa10.61□□□□□ -0.71
SYNE1-214ENST00000454018 GALR2O43603 387 aaPredicted RBP10.61□□□□□ -0.71
SYNE1-214ENST00000454018 ZNF280AP59817 542 aaPredicted RBP10.61□□□□□ -0.71
SYNE1-214ENST00000454018 HDLBPQ00341 1268 aaKnown RBP10.61□□□□□ -0.71
SYNE1-214ENST00000454018 MAP3K12Q12852 859 aa10.61□□□□□ -0.71
SYNE1-214ENST00000454018 TTC22Q5TAA0 569 aa10.61□□□□□ -0.71
SYNE1-214ENST00000454018 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.61□□□□□ -0.71
SYNE1-214ENST00000454018 TTF2Q9UNY4 1162 aaKnown RBP10.61□□□□□ -0.71
SYNE1-214ENST00000454018 NDUFB9Q9Y6M9 179 aa10.61□□□□□ -0.71
SYNE1-214ENST00000454018 TRPM7Q96QT4 1865 aa10.6□□□□□ -0.71
SYNE1-214ENST00000454018 H7C1D1 291 aa10.6□□□□□ -0.71
SYNE1-214ENST00000454018 IDH1O75874 414 aaKnown RBP10.6□□□□□ -0.71
SYNE1-214ENST00000454018 GSTO1P78417 241 aa10.6□□□□□ -0.71
SYNE1-214ENST00000454018 LRRFIP1Q32MZ4 808 aaKnown RBP10.6□□□□□ -0.71
SYNE1-214ENST00000454018 TBC1D9Q6ZT07 1266 aa10.6□□□□□ -0.71
SYNE1-214ENST00000454018 TICAM2Q86XR7 235 aa10.6□□□□□ -0.71
SYNE1-214ENST00000454018 SLF2Q8IX21 1173 aa10.6□□□□□ -0.71
SYNE1-214ENST00000454018 CNTROBQ8N137 903 aa10.6□□□□□ -0.71
SYNE1-214ENST00000454018 KBTBD3Q8NAB2 608 aa10.6□□□□□ -0.71
SYNE1-214ENST00000454018 EVI5LQ96CN4 794 aa10.6□□□□□ -0.71
SYNE1-214ENST00000454018 ANTXR1Q9H6X2 564 aa10.6□□□□□ -0.71
SYNE1-214ENST00000454018 PIH1D3Q9NQM4 214 aaKnown RBP10.6□□□□□ -0.71
SYNE1-214ENST00000454018 RAI14Q9P0K7 980 aa10.6□□□□□ -0.71
SYNE1-214ENST00000454018 HACL1Q9UJ83 578 aa10.6□□□□□ -0.71
SYNE1-214ENST00000454018 LAMA4Q16363 1823 aa10.6□□□□□ -0.71
SYNE1-214ENST00000454018 F8W031 263 aaPredicted RBP10.59□□□□□ -0.71
SYNE1-214ENST00000454018 RGS3P49796 1198 aa10.59□□□□□ -0.71
SYNE1-214ENST00000454018 MECOMQ03112 1051 aa10.59□□□□□ -0.71
SYNE1-214ENST00000454018 GRIK5Q16478 980 aa10.59□□□□□ -0.71
SYNE1-214ENST00000454018 TEKT1Q969V4 418 aa10.59□□□□□ -0.71
SYNE1-214ENST00000454018 NSUN4Q96CB9 384 aaKnown RBP10.59□□□□□ -0.71
SYNE1-214ENST00000454018 EDC3Q96F86 508 aaKnown RBP10.59□□□□□ -0.71
SYNE1-214ENST00000454018 CNOT7Q9UIV1 285 aaKnown RBP10.59□□□□□ -0.71
SYNE1-214ENST00000454018 MROH7-TTC4A0A0A0MT08 1334 aa10.59□□□□□ -0.71
SYNE1-214ENST00000454018 GAKO14976 1311 aa10.59□□□□□ -0.71
SYNE1-214ENST00000454018 TRIM6-TRIM34B2RNG4 842 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 MAP3K7O43318 606 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 GSPT1P15170 499 aaKnown RBP10.58□□□□□ -0.72
SYNE1-214ENST00000454018 YY1P25490 414 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 ATN1P54259 1190 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-214ENST00000454018 ZSCAN25Q6NSZ9 544 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 HHIPL2Q6UWX4 724 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 MTMR14Q8NCE2 650 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 FSD1Q9BTV5 496 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 MRIQ9BWK5 157 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 MYOZ2Q9NPC6 264 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 ADARB2Q9NS39 739 aaKnown RBP10.58□□□□□ -0.72
SYNE1-214ENST00000454018 MAP4K4O95819 1239 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-214ENST00000454018 LDHCP07864 332 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 ZFYP08048 801 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-214ENST00000454018 VEGFAP15692 232 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-214ENST00000454018 PDE6AP16499 860 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 EPHX2P34913 555 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 EPS15P42566 896 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 CRKP46108 304 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 CLK2P49760 499 aaKnown RBP10.58□□□□□ -0.72
SYNE1-214ENST00000454018 IRF5Q13568 498 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 DIXDC1Q155Q3 683 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 KIF4BQ2VIQ3 1234 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 BMP2KLQ5H9B9 411 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 SLC9C2Q5TAH2 1124 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 NAA16Q6N069 864 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-214ENST00000454018 SKAP1Q86WV1 359 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 MAGEB6Q8N7X4 407 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 BANK1Q8NDB2 785 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 ZDHHC15Q96MV8 337 aa10.58□□□□□ -0.72
SYNE1-214ENST00000454018 SHTN1A0MZ66 631 aa10.57□□□□□ -0.72
SYNE1-214ENST00000454018 ADD2P35612 726 aa10.57□□□□□ -0.72
SYNE1-214ENST00000454018 RFC5P40937 340 aa10.57□□□□□ -0.72
SYNE1-214ENST00000454018 RBM5P52756 815 aaKnown RBP eCLIP10.57□□□□□ -0.72
SYNE1-214ENST00000454018 DLGAP5Q15398 846 aa10.57□□□□□ -0.72
SYNE1-214ENST00000454018 TSR1Q2NL82 804 aaKnown RBP10.57□□□□□ -0.72
SYNE1-214ENST00000454018 CFAP100Q494V2 611 aa10.57□□□□□ -0.72
SYNE1-214ENST00000454018 USP50Q70EL3 339 aaPredicted RBP10.57□□□□□ -0.72
SYNE1-214ENST00000454018 PNMA8AQ86V59 439 aaPredicted RBP10.57□□□□□ -0.72
SYNE1-214ENST00000454018 CERS3Q8IU89 383 aa10.57□□□□□ -0.72
SYNE1-214ENST00000454018 ZNF526Q8TF50 670 aaPredicted RBP10.57□□□□□ -0.72
SYNE1-214ENST00000454018 ZNF384Q8TF68 577 aa10.57□□□□□ -0.72
SYNE1-214ENST00000454018 RILPL2Q969X0 211 aa10.57□□□□□ -0.72
SYNE1-214ENST00000454018 FAM163AQ96GL9 167 aaPredicted RBP10.57□□□□□ -0.72
SYNE1-214ENST00000454018 NOL10Q9BSC4 688 aaKnown RBP10.57□□□□□ -0.72
SYNE1-214ENST00000454018 TAF1DQ9H5J8 278 aaPredicted RBP10.57□□□□□ -0.72
SYNE1-214ENST00000454018 DAGLAQ9Y4D2 1042 aa10.57□□□□□ -0.72
SYNE1-214ENST00000454018 POTECB2RU33 542 aa10.56□□□□□ -0.72
SYNE1-214ENST00000454018 HIP1O00291 1037 aa10.56□□□□□ -0.72
SYNE1-214ENST00000454018 MYO1BO43795 1136 aa10.56□□□□□ -0.72
SYNE1-214ENST00000454018 UBE3CQ15386 1083 aa10.56□□□□□ -0.72
SYNE1-214ENST00000454018 TBC1D10BQ4KMP7 808 aaPredicted RBP10.56□□□□□ -0.72
SYNE1-214ENST00000454018 SAMD7Q7Z3H4 446 aa10.56□□□□□ -0.72
SYNE1-214ENST00000454018 METTL3Q86U44 580 aaKnown RBP10.56□□□□□ -0.72
SYNE1-214ENST00000454018 RGS22Q8NE09 1264 aa10.56□□□□□ -0.72
SYNE1-214ENST00000454018 TRPM4Q8TD43 1214 aa10.56□□□□□ -0.72
SYNE1-214ENST00000454018 ZBED3Q96IU2 234 aaPredicted RBP10.56□□□□□ -0.72
SYNE1-214ENST00000454018 NMRK2Q9NPI5 230 aa10.56□□□□□ -0.72
SYNE1-214ENST00000454018 ZNF532Q9HCE3 1301 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms