RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 GLI3P10071 1580 aa21.88■■□□□ 1.09
HMGA1-205ENST00000447654 WDR17Q8IZU2 1322 aa21.88■■□□□ 1.09
HMGA1-205ENST00000447654 TOB2Q14106 344 aaPredicted RBP21.88■■□□□ 1.09
HMGA1-205ENST00000447654 ADALQ6DHV7 355 aa21.88■■□□□ 1.09
HMGA1-205ENST00000447654 RIC3Q7Z5B4 369 aa21.88■■□□□ 1.09
HMGA1-205ENST00000447654 BSDC1Q9NW68 430 aaPredicted RBP21.88■■□□□ 1.09
HMGA1-205ENST00000447654 SLC27A2O14975 620 aa21.87■■□□□ 1.09
HMGA1-205ENST00000447654 GCFC2P16383 781 aaKnown RBP21.87■■□□□ 1.09
HMGA1-205ENST00000447654 RDXP35241 583 aaKnown RBP21.87■■□□□ 1.09
HMGA1-205ENST00000447654 SCRN1Q12765 414 aa21.87■■□□□ 1.09
HMGA1-205ENST00000447654 PREPLQ4J6C6 727 aaPredicted RBP21.87■■□□□ 1.09
HMGA1-205ENST00000447654 UTYO14607 1347 aa21.87■■□□□ 1.09
HMGA1-205ENST00000447654 FSBPO95073 299 aa21.87■■□□□ 1.09
HMGA1-205ENST00000447654 PIP4K2BP78356 416 aa21.87■■□□□ 1.09
HMGA1-205ENST00000447654 CRYMQ14894 314 aa21.87■■□□□ 1.09
HMGA1-205ENST00000447654 PPP2R5AQ15172 486 aa21.87■■□□□ 1.09
HMGA1-205ENST00000447654 TOM1L2Q6ZVM7 507 aa21.87■■□□□ 1.09
HMGA1-205ENST00000447654 XAGE2Q96GT9 111 aa21.87■■□□□ 1.09
HMGA1-205ENST00000447654 COL5A2P05997 1499 aaPredicted RBP21.86■■□□□ 1.09
HMGA1-205ENST00000447654 SNRPA1P09661 255 aaKnown RBP21.86■■□□□ 1.09
HMGA1-205ENST00000447654 MRPL12P52815 198 aaKnown RBP21.86■■□□□ 1.09
HMGA1-205ENST00000447654 CABP4P57796 275 aa21.86■■□□□ 1.09
HMGA1-205ENST00000447654 TBX2Q13207 712 aaPredicted RBP21.86■■□□□ 1.09
HMGA1-205ENST00000447654 TEX11Q8IYF3 940 aa21.86■■□□□ 1.09
HMGA1-205ENST00000447654 SMARCC1Q92922 1105 aaPredicted RBP21.86■■□□□ 1.09
HMGA1-205ENST00000447654 CDHR2Q9BYE9 1310 aa21.86■■□□□ 1.09
HMGA1-205ENST00000447654 SHTN1A0MZ66 631 aa21.85■■□□□ 1.09
HMGA1-205ENST00000447654 KLHL33A6NCF5 533 aa21.85■■□□□ 1.09
HMGA1-205ENST00000447654 NEURL1BA8MQ27 555 aa21.85■■□□□ 1.09
HMGA1-205ENST00000447654 DDX58O95786 925 aaKnown RBP21.85■■□□□ 1.09
HMGA1-205ENST00000447654 WHAMMP3Q1A5X7 153 aa21.85■■□□□ 1.09
HMGA1-205ENST00000447654 EPHA10Q5JZY3 1008 aa21.85■■□□□ 1.09
HMGA1-205ENST00000447654 TTC5Q8N0Z6 440 aa21.85■■□□□ 1.09
HMGA1-205ENST00000447654 FAM177A1Q8N128 213 aaPredicted RBP21.85■■□□□ 1.09
HMGA1-205ENST00000447654 SMARCC2Q8TAQ2 1214 aa21.85■■□□□ 1.09
HMGA1-205ENST00000447654 RNF217Q8TC41 542 aa21.85■■□□□ 1.09
HMGA1-205ENST00000447654 FAM212AQ96EL1 285 aa21.85■■□□□ 1.09
HMGA1-205ENST00000447654 FAXDC2Q96IV6 333 aa21.85■■□□□ 1.09
HMGA1-205ENST00000447654 SYF2O95926 243 aaKnown RBP21.85■■□□□ 1.09
HMGA1-205ENST00000447654 FBXW10Q5XX13 1052 aa21.85■■□□□ 1.09
HMGA1-205ENST00000447654 NF2P35240 595 aa21.84■■□□□ 1.09
HMGA1-205ENST00000447654 KRT32Q14532 448 aa21.84■■□□□ 1.09
HMGA1-205ENST00000447654 B4GALNT4Q76KP1 1039 aa21.84■■□□□ 1.09
HMGA1-205ENST00000447654 KLHDC4Q8TBB5 520 aa21.84■■□□□ 1.09
HMGA1-205ENST00000447654 MYD88Q99836 296 aa21.84■■□□□ 1.09
HMGA1-205ENST00000447654 JPH2Q9BR39 696 aaPredicted RBP21.84■■□□□ 1.09
HMGA1-205ENST00000447654 DTNBO60941 627 aa21.84■■□□□ 1.09
HMGA1-205ENST00000447654 SERPINC1P01008 464 aa21.84■■□□□ 1.09
HMGA1-205ENST00000447654 SLC3A2P08195 630 aaKnown RBP21.84■■□□□ 1.09
HMGA1-205ENST00000447654 ME1P48163 572 aa21.84■■□□□ 1.09
HMGA1-205ENST00000447654 OS9Q13438 667 aaPredicted RBP21.84■■□□□ 1.09
HMGA1-205ENST00000447654 WLSQ5T9L3 541 aa21.84■■□□□ 1.09
HMGA1-205ENST00000447654 EVI5LQ96CN4 794 aa21.84■■□□□ 1.09
HMGA1-205ENST00000447654 FMNL2Q96PY5 1086 aa21.84■■□□□ 1.09
HMGA1-205ENST00000447654 VSNL1P62760 191 aa21.83■■□□□ 1.09
HMGA1-205ENST00000447654 CNKSR2Q8WXI2 1034 aa21.83■■□□□ 1.09
HMGA1-205ENST00000447654 HSD3B7Q9H2F3 369 aa21.83■■□□□ 1.09
HMGA1-205ENST00000447654 LRRIQ3A6PVS8 624 aaPredicted RBP21.82■■□□□ 1.08
HMGA1-205ENST00000447654 CCDC175P0C221 793 aa21.82■■□□□ 1.08
HMGA1-205ENST00000447654 MYL5Q02045 173 aa21.82■■□□□ 1.08
HMGA1-205ENST00000447654 GCKRQ14397 625 aa21.82■■□□□ 1.08
HMGA1-205ENST00000447654 CFAP100Q494V2 611 aa21.82■■□□□ 1.08
HMGA1-205ENST00000447654 ZCRB1Q8TBF4 217 aaKnown RBP21.82■■□□□ 1.08
HMGA1-205ENST00000447654 USP28Q96RU2 1077 aa21.82■■□□□ 1.08
HMGA1-205ENST00000447654 METTL22Q9BUU2 404 aaPredicted RBP21.82■■□□□ 1.08
HMGA1-205ENST00000447654 JCADQ9P266 1359 aa21.82■■□□□ 1.08
HMGA1-205ENST00000447654 A0A087WWV3 80 aa21.82■■□□□ 1.08
HMGA1-205ENST00000447654 KIF5CO60282 957 aa21.82■■□□□ 1.08
HMGA1-205ENST00000447654 SASH1O94885 1247 aa21.82■■□□□ 1.08
HMGA1-205ENST00000447654 SCP2P22307 547 aa21.82■■□□□ 1.08
HMGA1-205ENST00000447654 LMOD1P29536 600 aaPredicted RBP21.82■■□□□ 1.08
HMGA1-205ENST00000447654 CCT5P48643 541 aa21.82■■□□□ 1.08
HMGA1-205ENST00000447654 FNTAP49354 379 aa21.82■■□□□ 1.08
HMGA1-205ENST00000447654 PPFIA1Q13136 1202 aa21.82■■□□□ 1.08
HMGA1-205ENST00000447654 ANKRD13DQ6ZTN6 518 aa21.82■■□□□ 1.08
HMGA1-205ENST00000447654 GPATCH3Q96I76 525 aa21.82■■□□□ 1.08
HMGA1-205ENST00000447654 CTAGE15A4D2H0 777 aa21.81■■□□□ 1.08
HMGA1-205ENST00000447654 PHACTR2O75167 634 aa21.81■■□□□ 1.08
HMGA1-205ENST00000447654 CTAGE8P0CG41 777 aa21.81■■□□□ 1.08
HMGA1-205ENST00000447654 CTAGE6Q86UF2 777 aa21.81■■□□□ 1.08
HMGA1-205ENST00000447654 CTAGE4Q8IX94 777 aa21.81■■□□□ 1.08
HMGA1-205ENST00000447654 FAM76AQ8TAV0 307 aa21.81■■□□□ 1.08
HMGA1-205ENST00000447654 STRN4Q9NRL3 753 aa21.81■■□□□ 1.08
HMGA1-205ENST00000447654 RTEL1Q9NZ71 1219 aa21.81■■□□□ 1.08
HMGA1-205ENST00000447654 ABCA3Q99758 1704 aa21.81■■□□□ 1.08
HMGA1-205ENST00000447654 NEDD4P46934 1319 aa21.81■■□□□ 1.08
HMGA1-205ENST00000447654 NBPF26B4DH59 902 aa21.81■■□□□ 1.08
HMGA1-205ENST00000447654 UBAP1LF5GYI3 381 aa21.81■■□□□ 1.08
HMGA1-205ENST00000447654 ARHGAP25P42331 645 aa21.81■■□□□ 1.08
HMGA1-205ENST00000447654 IRAK1P51617 712 aa21.81■■□□□ 1.08
HMGA1-205ENST00000447654 NBPF14Q5TI25 921 aa21.81■■□□□ 1.08
HMGA1-205ENST00000447654 NBPF10Q6P3W6 841 aaKnown RBP21.81■■□□□ 1.08
HMGA1-205ENST00000447654 YTHDF3Q7Z739 585 aaKnown RBP21.81■■□□□ 1.08
HMGA1-205ENST00000447654 NBPF15Q8N660 670 aa21.81■■□□□ 1.08
HMGA1-205ENST00000447654 CLIC6Q96NY7 704 aa21.81■■□□□ 1.08
HMGA1-205ENST00000447654 PLEKHA4Q9H4M7 779 aa21.81■■□□□ 1.08
HMGA1-205ENST00000447654 PLCB4Q15147 1175 aa21.8■■□□□ 1.08
HMGA1-205ENST00000447654 CPLX2Q6PUV4 134 aaKnown RBP21.8■■□□□ 1.08
HMGA1-205ENST00000447654 ZKSCAN4Q969J2 545 aaPredicted RBP21.8■■□□□ 1.08
HMGA1-205ENST00000447654 SUGCTQ9HAC7 445 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms