RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 KLHDC4Q8TBB5 520 aa17.23■□□□□ 0.35
PTPRF-206ENST00000429895 USTQ9Y2C2 406 aa17.23■□□□□ 0.35
PTPRF-206ENST00000429895 CALUO43852 315 aaPredicted RBP17.23■□□□□ 0.35
PTPRF-206ENST00000429895 PLCD1P51178 756 aa17.23■□□□□ 0.35
PTPRF-206ENST00000429895 PPARDQ03181 441 aa17.23■□□□□ 0.35
PTPRF-206ENST00000429895 CTDSPL2Q05D32 466 aa17.23■□□□□ 0.35
PTPRF-206ENST00000429895 DPP8Q6V1X1 898 aaPredicted RBP17.23■□□□□ 0.35
PTPRF-206ENST00000429895 JAKMIP2Q96AA8 810 aa17.23■□□□□ 0.35
PTPRF-206ENST00000429895 RAD51AP2Q09MP3 1159 aa17.23■□□□□ 0.35
PTPRF-206ENST00000429895 BIRC2Q13490 618 aa17.23■□□□□ 0.35
PTPRF-206ENST00000429895 CEP57Q86XR8 500 aa17.23■□□□□ 0.35
PTPRF-206ENST00000429895 HSPA1LP34931 641 aa17.22■□□□□ 0.35
PTPRF-206ENST00000429895 PUM3Q15397 648 aaKnown RBP17.22■□□□□ 0.35
PTPRF-206ENST00000429895 EAPPQ56P03 285 aaPredicted RBP17.22■□□□□ 0.35
PTPRF-206ENST00000429895 ELP1O95163 1332 aa17.22■□□□□ 0.35
PTPRF-206ENST00000429895 AKR1B15C9JRZ8 316 aaPredicted RBP17.22■□□□□ 0.35
PTPRF-206ENST00000429895 HOXC9P31274 260 aa17.22■□□□□ 0.35
PTPRF-206ENST00000429895 ASXL1Q8IXJ9 1541 aa17.22■□□□□ 0.35
PTPRF-206ENST00000429895 ASIC2Q16515 512 aa17.22■□□□□ 0.35
PTPRF-206ENST00000429895 SAMD15Q9P1V8 674 aa17.22■□□□□ 0.35
PTPRF-206ENST00000429895 CHMLP26374 656 aa17.22■□□□□ 0.35
PTPRF-206ENST00000429895 TBC1D8BQ0IIM8 1120 aa17.22■□□□□ 0.35
PTPRF-206ENST00000429895 SETDB1Q15047 1291 aa17.22■□□□□ 0.35
PTPRF-206ENST00000429895 XAGE2Q96GT9 111 aa17.22■□□□□ 0.35
PTPRF-206ENST00000429895 LIN9Q5TKA1 542 aa17.21■□□□□ 0.35
PTPRF-206ENST00000429895 NOL3O60936 208 aaKnown RBP17.21■□□□□ 0.35
PTPRF-206ENST00000429895 FAM160A1Q05DH4 1040 aa17.21■□□□□ 0.35
PTPRF-206ENST00000429895 NSMFQ6X4W1 530 aa17.21■□□□□ 0.35
PTPRF-206ENST00000429895 TTLL3Q9Y4R7 772 aa17.21■□□□□ 0.35
PTPRF-206ENST00000429895 KAT6BQ8WYB5 2073 aa17.21■□□□□ 0.35
PTPRF-206ENST00000429895 H0YIN7 160 aa17.21■□□□□ 0.35
PTPRF-206ENST00000429895 BAG1Q99933 345 aaPredicted RBP17.21■□□□□ 0.35
PTPRF-206ENST00000429895 BEGAINQ9BUH8 593 aa17.21■□□□□ 0.35
PTPRF-206ENST00000429895 GTPBP4Q9BZE4 634 aaKnown RBP17.21■□□□□ 0.35
PTPRF-206ENST00000429895 SORBS3O60504 671 aa17.21■□□□□ 0.35
PTPRF-206ENST00000429895 HAUS3Q68CZ6 603 aa17.21■□□□□ 0.35
PTPRF-206ENST00000429895 AZI2Q9H6S1 392 aa17.21■□□□□ 0.35
PTPRF-206ENST00000429895 C19orf44Q9H6X5 657 aa17.21■□□□□ 0.35
PTPRF-206ENST00000429895 ZBED4O75132 1171 aa17.2■□□□□ 0.34
PTPRF-206ENST00000429895 IVLP07476 585 aa17.2■□□□□ 0.34
PTPRF-206ENST00000429895 UTP14CQ5TAP6 766 aaKnown RBP17.2■□□□□ 0.34
PTPRF-206ENST00000429895 NCOA5Q9HCD5 579 aaKnown RBP17.2■□□□□ 0.34
PTPRF-206ENST00000429895 CNNM4Q6P4Q7 775 aa17.2■□□□□ 0.34
PTPRF-206ENST00000429895 DYMQ7RTS9 669 aa17.2■□□□□ 0.34
PTPRF-206ENST00000429895 CNGA4Q8IV77 575 aa17.2■□□□□ 0.34
PTPRF-206ENST00000429895 CCDC26Q8TAB7 109 aa17.2■□□□□ 0.34
PTPRF-206ENST00000429895 MYL10Q9BUA6 226 aa17.2■□□□□ 0.34
PTPRF-206ENST00000429895 EXOC7Q9UPT5 735 aa17.2■□□□□ 0.34
PTPRF-206ENST00000429895 GRIN2AQ12879 1464 aa17.2■□□□□ 0.34
PTPRF-206ENST00000429895 DEXIO95424 95 aa17.2■□□□□ 0.34
PTPRF-206ENST00000429895 HPDP32754 393 aaPredicted RBP17.2■□□□□ 0.34
PTPRF-206ENST00000429895 CLUL1Q15846 466 aa17.2■□□□□ 0.34
PTPRF-206ENST00000429895 VIMP08670 466 aaKnown RBP17.2■□□□□ 0.34
PTPRF-206ENST00000429895 EP400NLQ6ZTU2 488 aa17.2■□□□□ 0.34
PTPRF-206ENST00000429895 GPR161Q8N6U8 529 aaKnown RBP17.2■□□□□ 0.34
PTPRF-206ENST00000429895 ANO3Q9BYT9 981 aa17.2■□□□□ 0.34
PTPRF-206ENST00000429895 NKIRAS1Q9NYS0 192 aa17.2■□□□□ 0.34
PTPRF-206ENST00000429895 FAM98CQ17RN3 349 aaKnown RBP17.19■□□□□ 0.34
PTPRF-206ENST00000429895 RPUSD2Q8IZ73 545 aaKnown RBP17.19■□□□□ 0.34
PTPRF-206ENST00000429895 VPS52Q8N1B4 723 aa17.19■□□□□ 0.34
PTPRF-206ENST00000429895 PHACTR3Q96KR7 559 aa17.19■□□□□ 0.34
PTPRF-206ENST00000429895 TRIM31Q9BZY9 425 aa17.19■□□□□ 0.34
PTPRF-206ENST00000429895 MKRN1Q9UHC7 482 aaKnown RBP17.19■□□□□ 0.34
PTPRF-206ENST00000429895 SOS1Q07889 1333 aaPredicted RBP17.19■□□□□ 0.34
PTPRF-206ENST00000429895 VAMP4O75379 141 aa17.19■□□□□ 0.34
PTPRF-206ENST00000429895 MYL5Q02045 173 aa17.19■□□□□ 0.34
PTPRF-206ENST00000429895 TNNI3KQ59H18 835 aa17.19■□□□□ 0.34
PTPRF-206ENST00000429895 MYCT1Q8N699 235 aa17.19■□□□□ 0.34
PTPRF-206ENST00000429895 FPGT-TNNI3KV9GXZ4 949 aa17.19■□□□□ 0.34
PTPRF-206ENST00000429895 RPS6KB1P23443 525 aa17.19■□□□□ 0.34
PTPRF-206ENST00000429895 LONRF3Q496Y0 759 aa17.19■□□□□ 0.34
PTPRF-206ENST00000429895 IGSF22Q8N9C0 903 aa17.19■□□□□ 0.34
PTPRF-206ENST00000429895 CSRNP2Q9H175 543 aa17.19■□□□□ 0.34
PTPRF-206ENST00000429895 DCTPP1Q9H773 170 aa17.19■□□□□ 0.34
PTPRF-206ENST00000429895 CFBP00751 764 aa17.19■□□□□ 0.34
PTPRF-206ENST00000429895 SLC1A4P43007 532 aa17.19■□□□□ 0.34
PTPRF-206ENST00000429895 ITIH3Q06033 890 aa17.19■□□□□ 0.34
PTPRF-206ENST00000429895 BEND3Q5T5X7 828 aa17.19■□□□□ 0.34
PTPRF-206ENST00000429895 PLEKHM2Q8IWE5 1019 aa17.19■□□□□ 0.34
PTPRF-206ENST00000429895 EYA2O00167 538 aa17.18■□□□□ 0.34
PTPRF-206ENST00000429895 MAPKAPK5Q8IW41 473 aa17.18■□□□□ 0.34
PTPRF-206ENST00000429895 PDE8AO60658 829 aa17.18■□□□□ 0.34
PTPRF-206ENST00000429895 G2E3Q7L622 706 aa17.18■□□□□ 0.34
PTPRF-206ENST00000429895 STK10O94804 968 aaKnown RBP17.18■□□□□ 0.34
PTPRF-206ENST00000429895 INTS8Q75QN2 995 aaKnown RBP17.18■□□□□ 0.34
PTPRF-206ENST00000429895 PLBD2Q8NHP8 589 aa17.18■□□□□ 0.34
PTPRF-206ENST00000429895 ADCY7P51828 1080 aa17.18■□□□□ 0.34
PTPRF-206ENST00000429895 OTUD7BQ6GQQ9 843 aa17.18■□□□□ 0.34
PTPRF-206ENST00000429895 TBC1D31Q96DN5 1066 aa17.18■□□□□ 0.34
PTPRF-206ENST00000429895 DBNDD2Q9BQY9 259 aa17.18■□□□□ 0.34
PTPRF-206ENST00000429895 NDUFB9Q9Y6M9 179 aa17.18■□□□□ 0.34
PTPRF-206ENST00000429895 M0QZ92 97 aa17.18■□□□□ 0.34
PTPRF-206ENST00000429895 NBPF11Q86T75 865 aa17.18■□□□□ 0.34
PTPRF-206ENST00000429895 CDAN1Q8IWY9 1227 aa17.18■□□□□ 0.34
PTPRF-206ENST00000429895 NELFCDQ8IXH7 590 aa17.18■□□□□ 0.34
PTPRF-206ENST00000429895 CSGALNACT2Q8N6G5 542 aa17.18■□□□□ 0.34
PTPRF-206ENST00000429895 HGSO14964 777 aaPredicted RBP17.17■□□□□ 0.34
PTPRF-206ENST00000429895 POLR2DO15514 142 aaKnown RBP17.17■□□□□ 0.34
PTPRF-206ENST00000429895 SNX29Q8TEQ0 813 aa17.17■□□□□ 0.34
PTPRF-206ENST00000429895 SH3TC1Q8TE82 1336 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms