RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 KCNH4Q9UQ05 1017 aa17.93■□□□□ 0.46
SDC1-204ENST00000429035 PHIPQ8WWQ0 1821 aa17.93■□□□□ 0.46
SDC1-204ENST00000429035 BRCA2P51587 3418 aa17.92■□□□□ 0.46
SDC1-204ENST00000429035 ENTPD3O75355 529 aa17.92■□□□□ 0.46
SDC1-204ENST00000429035 BCAR3O75815 825 aa17.92■□□□□ 0.46
SDC1-204ENST00000429035 ATF7IPQ6VMQ6 1270 aa17.92■□□□□ 0.46
SDC1-204ENST00000429035 GADL1Q6ZQY3 521 aa17.92■□□□□ 0.46
SDC1-204ENST00000429035 SCYL3Q8IZE3 742 aa17.92■□□□□ 0.46
SDC1-204ENST00000429035 PARK7Q99497 189 aaKnown RBP17.92■□□□□ 0.46
SDC1-204ENST00000429035 DDX4Q9NQI0 724 aaKnown RBP17.92■□□□□ 0.46
SDC1-204ENST00000429035 PDS5AQ29RF7 1337 aaKnown RBP17.92■□□□□ 0.46
SDC1-204ENST00000429035 ATRNL1Q5VV63 1379 aa17.91■□□□□ 0.46
SDC1-204ENST00000429035 FMNL1O95466 1100 aaPredicted RBP17.91■□□□□ 0.46
SDC1-204ENST00000429035 SLURP2P0DP57 97 aa17.91■□□□□ 0.46
SDC1-204ENST00000429035 PSMC4P43686 418 aa17.91■□□□□ 0.46
SDC1-204ENST00000429035 MECOMQ03112 1051 aa17.91■□□□□ 0.46
SDC1-204ENST00000429035 G3BP1Q13283 466 aaKnown RBP eCLIP17.91■□□□□ 0.46
SDC1-204ENST00000429035 PI16Q6UXB8 463 aa17.91■□□□□ 0.46
SDC1-204ENST00000429035 IDI2Q9BXS1 227 aa17.91■□□□□ 0.46
SDC1-204ENST00000429035 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.91■□□□□ 0.46
SDC1-204ENST00000429035 MKI67P46013 3256 aaKnown RBP17.9■□□□□ 0.46
SDC1-204ENST00000429035 PNMA6EA0A0J9YXQ4 647 aa17.9■□□□□ 0.46
SDC1-204ENST00000429035 DDTLA6NHG4 134 aaPredicted RBP17.9■□□□□ 0.46
SDC1-204ENST00000429035 OS9Q13438 667 aaPredicted RBP17.9■□□□□ 0.46
SDC1-204ENST00000429035 MTX1Q13505 466 aa17.9■□□□□ 0.46
SDC1-204ENST00000429035 C17orf99Q6UX52 265 aa17.9■□□□□ 0.46
SDC1-204ENST00000429035 SH3BP5LQ7L8J4 393 aa17.9■□□□□ 0.46
SDC1-204ENST00000429035 RAI14Q9P0K7 980 aa17.9■□□□□ 0.46
SDC1-204ENST00000429035 HMG20BQ9P0W2 317 aa17.9■□□□□ 0.46
SDC1-204ENST00000429035 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.9■□□□□ 0.46
SDC1-204ENST00000429035 ZHX2Q9Y6X8 837 aa17.9■□□□□ 0.46
SDC1-204ENST00000429035 MYO5AQ9Y4I1 1855 aaKnown RBP17.89■□□□□ 0.45
SDC1-204ENST00000429035 CYP2C8P10632 490 aa17.89■□□□□ 0.45
SDC1-204ENST00000429035 TBC1D9Q6ZT07 1266 aa17.89■□□□□ 0.45
SDC1-204ENST00000429035 CCDC84Q86UT8 332 aaPredicted RBP17.89■□□□□ 0.45
SDC1-204ENST00000429035 SPATA5Q8NB90 893 aa17.89■□□□□ 0.45
SDC1-204ENST00000429035 RAET1EQ8TD07 263 aa17.89■□□□□ 0.45
SDC1-204ENST00000429035 MYPNQ86TC9 1320 aa17.89■□□□□ 0.45
SDC1-204ENST00000429035 ADGRA2Q96PE1 1338 aa17.89■□□□□ 0.45
SDC1-204ENST00000429035 TRIM75PA6NK02 468 aa17.88■□□□□ 0.45
SDC1-204ENST00000429035 FAM196BA6NMK8 535 aa17.88■□□□□ 0.45
SDC1-204ENST00000429035 PHF20L1A8MW92 1017 aa17.88■□□□□ 0.45
SDC1-204ENST00000429035 CXCL11O14625 94 aa17.88■□□□□ 0.45
SDC1-204ENST00000429035 GNRH1P01148 92 aa17.88■□□□□ 0.45
SDC1-204ENST00000429035 PTPRAP18433 802 aa17.88■□□□□ 0.45
SDC1-204ENST00000429035 OSBPP22059 807 aa17.88■□□□□ 0.45
SDC1-204ENST00000429035 HOXD10P28358 340 aa17.88■□□□□ 0.45
SDC1-204ENST00000429035 CTGFP29279 349 aa17.88■□□□□ 0.45
SDC1-204ENST00000429035 PRMT2P55345 433 aa17.88■□□□□ 0.45
SDC1-204ENST00000429035 GSTO1P78417 241 aa17.88■□□□□ 0.45
SDC1-204ENST00000429035 MOGSQ13724 837 aa17.88■□□□□ 0.45
SDC1-204ENST00000429035 TMEM57Q8N5G2 664 aa17.88■□□□□ 0.45
SDC1-204ENST00000429035 TRIM47Q96LD4 638 aa17.88■□□□□ 0.45
SDC1-204ENST00000429035 CDK5RAP2Q96SN8 1893 aa17.87■□□□□ 0.45
SDC1-204ENST00000429035 GCC1Q96CN9 775 aa17.87■□□□□ 0.45
SDC1-204ENST00000429035 NOL10Q9BSC4 688 aaKnown RBP17.87■□□□□ 0.45
SDC1-204ENST00000429035 C1orf115Q9H7X2 142 aa17.87■□□□□ 0.45
SDC1-204ENST00000429035 LRP2BPQ9P2M1 347 aa17.87■□□□□ 0.45
SDC1-204ENST00000429035 BIN2Q9UBW5 565 aaPredicted RBP17.87■□□□□ 0.45
SDC1-204ENST00000429035 SRRDQ9UH36 339 aa17.87■□□□□ 0.45
SDC1-204ENST00000429035 GPR75-ASB3A0A0A6YYF3 556 aa17.86■□□□□ 0.45
SDC1-204ENST00000429035 A0A0G2JLL6 359 aaPredicted RBP17.86■□□□□ 0.45
SDC1-204ENST00000429035 ZBTB22O15209 634 aa17.86■□□□□ 0.45
SDC1-204ENST00000429035 LDHCP07864 332 aa17.86■□□□□ 0.45
SDC1-204ENST00000429035 ARID4AP29374 1257 aaPredicted RBP17.86■□□□□ 0.45
SDC1-204ENST00000429035 MCAMP43121 646 aa17.86■□□□□ 0.45
SDC1-204ENST00000429035 FCGRTP55899 365 aa17.86■□□□□ 0.45
SDC1-204ENST00000429035 RHBDL3P58872 404 aa17.86■□□□□ 0.45
SDC1-204ENST00000429035 TTC39AQ5SRH9 613 aa17.86■□□□□ 0.45
SDC1-204ENST00000429035 ZKSCAN2Q63HK3 967 aa17.86■□□□□ 0.45
SDC1-204ENST00000429035 GPAT2Q6NUI2 795 aa17.86■□□□□ 0.45
SDC1-204ENST00000429035 FASTKD5Q7L8L6 764 aaKnown RBP17.86■□□□□ 0.45
SDC1-204ENST00000429035 PRRT2Q7Z6L0 340 aaPredicted RBP17.86■□□□□ 0.45
SDC1-204ENST00000429035 FTSJ3Q8IY81 847 aaKnown RBP17.86■□□□□ 0.45
SDC1-204ENST00000429035 SMCR8Q8TEV9 937 aaPredicted RBP17.86■□□□□ 0.45
SDC1-204ENST00000429035 FAM163AQ96GL9 167 aaPredicted RBP17.86■□□□□ 0.45
SDC1-204ENST00000429035 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.86■□□□□ 0.45
SDC1-204ENST00000429035 LOC285556D6RIA3 1793 aa17.85■□□□□ 0.45
SDC1-204ENST00000429035 UQCRFS1P1P0C7P4 283 aa17.85■□□□□ 0.45
SDC1-204ENST00000429035 HNRNPUQ00839 825 aaKnown RBP eCLIP17.85■□□□□ 0.45
SDC1-204ENST00000429035 PRKCZQ05513 592 aa17.85■□□□□ 0.45
SDC1-204ENST00000429035 MTFR1Q15390 333 aa17.85■□□□□ 0.45
SDC1-204ENST00000429035 TEX11Q8IYF3 940 aa17.85■□□□□ 0.45
SDC1-204ENST00000429035 ZNF384Q8TF68 577 aa17.85■□□□□ 0.45
SDC1-204ENST00000429035 NSUN4Q96CB9 384 aaKnown RBP17.85■□□□□ 0.45
SDC1-204ENST00000429035 SNRKQ9NRH2 765 aa17.85■□□□□ 0.45
SDC1-204ENST00000429035 AFG3L2Q9Y4W6 797 aa17.85■□□□□ 0.45
SDC1-204ENST00000429035 SIPA1L1O43166 1804 aa17.84■□□□□ 0.45
SDC1-204ENST00000429035 FOCADQ5VW36 1801 aa17.84■□□□□ 0.45
SDC1-204ENST00000429035 CTNND1O60716 968 aaKnown RBP17.84■□□□□ 0.45
SDC1-204ENST00000429035 GRK4P32298 578 aa17.84■□□□□ 0.45
SDC1-204ENST00000429035 ITPRIPQ8IWB1 547 aa17.84■□□□□ 0.45
SDC1-204ENST00000429035 OSBPL5Q9H0X9 879 aaPredicted RBP17.84■□□□□ 0.45
SDC1-204ENST00000429035 BCRP11274 1271 aa17.83■□□□□ 0.44
SDC1-204ENST00000429035 DBNDD2Q9BQY9 259 aa17.83■□□□□ 0.44
SDC1-204ENST00000429035 AATFQ9NY61 560 aaKnown RBP eCLIP17.83■□□□□ 0.44
SDC1-204ENST00000429035 TAOK2Q9UL54 1235 aa17.83■□□□□ 0.44
SDC1-204ENST00000429035 TNNI3KQ59H18 835 aa17.82■□□□□ 0.44
SDC1-204ENST00000429035 CCDC158Q5M9N0 1113 aa17.82■□□□□ 0.44
SDC1-204ENST00000429035 NAA16Q6N069 864 aaPredicted RBP17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms