RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 ARHGAP27Q6ZUM4 889 aa9.6□□□□□ -0.87
LINC01040-201ENST00000425048 DUSP23Q9BVJ7 150 aa9.6□□□□□ -0.87
LINC01040-201ENST00000425048 BCO2Q9BYV7 579 aa9.6□□□□□ -0.87
LINC01040-201ENST00000425048 FUT4P22083 530 aa9.59□□□□□ -0.87
LINC01040-201ENST00000425048 IFI16Q16666 785 aaKnown RBP9.59□□□□□ -0.87
LINC01040-201ENST00000425048 SULF2Q8IWU5 870 aa9.59□□□□□ -0.87
LINC01040-201ENST00000425048 EMILIN2Q9BXX0 1053 aa9.59□□□□□ -0.87
LINC01040-201ENST00000425048 AKAP2Q9Y2D5 859 aa9.59□□□□□ -0.87
LINC01040-201ENST00000425048 LEFTY1O75610 366 aa9.58□□□□□ -0.88
LINC01040-201ENST00000425048 ZC3H12AQ5D1E8 599 aaKnown RBP9.58□□□□□ -0.88
LINC01040-201ENST00000425048 PI16Q6UXB8 463 aa9.58□□□□□ -0.88
LINC01040-201ENST00000425048 ATG4DQ86TL0 474 aaPredicted RBP9.58□□□□□ -0.88
LINC01040-201ENST00000425048 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.58□□□□□ -0.88
LINC01040-201ENST00000425048 RNF214Q8ND24 703 aa9.58□□□□□ -0.88
LINC01040-201ENST00000425048 TMEM265A0A087WTH1 108 aa9.57□□□□□ -0.88
LINC01040-201ENST00000425048 NME2P22392 152 aa9.57□□□□□ -0.88
LINC01040-201ENST00000425048 OXCT1P55809 520 aa9.57□□□□□ -0.88
LINC01040-201ENST00000425048 ERVK-24P63145 666 aa9.57□□□□□ -0.88
LINC01040-201ENST00000425048 AOC3Q16853 763 aa9.57□□□□□ -0.88
LINC01040-201ENST00000425048 TMC7Q7Z402 723 aa9.57□□□□□ -0.88
LINC01040-201ENST00000425048 PI4K2BQ8TCG2 481 aa9.57□□□□□ -0.88
LINC01040-201ENST00000425048 STK35Q8TDR2 534 aa9.57□□□□□ -0.88
LINC01040-201ENST00000425048 ISL2Q96A47 359 aa9.57□□□□□ -0.88
LINC01040-201ENST00000425048 ARID1BQ8NFD5 2236 aaPredicted RBP9.57□□□□□ -0.88
LINC01040-201ENST00000425048 SOWAHDA6NJG2 315 aa9.56□□□□□ -0.88
LINC01040-201ENST00000425048 PLCB3Q01970 1234 aa9.56□□□□□ -0.88
LINC01040-201ENST00000425048 MAP1SQ66K74 1059 aaPredicted RBP9.56□□□□□ -0.88
LINC01040-201ENST00000425048 RETREG2Q8NC44 543 aa9.56□□□□□ -0.88
LINC01040-201ENST00000425048 HRASLS5Q96KN8 279 aa9.56□□□□□ -0.88
LINC01040-201ENST00000425048 RC3H2Q9HBD1 1191 aaKnown RBP9.56□□□□□ -0.88
LINC01040-201ENST00000425048 NEFMP07197 916 aa9.55□□□□□ -0.88
LINC01040-201ENST00000425048 RNASE1P07998 156 aaKnown RBP9.55□□□□□ -0.88
LINC01040-201ENST00000425048 JAG1P78504 1218 aa9.55□□□□□ -0.88
LINC01040-201ENST00000425048 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.55□□□□□ -0.88
LINC01040-201ENST00000425048 NXPE4Q6UWF7 544 aa9.55□□□□□ -0.88
LINC01040-201ENST00000425048 ARID3AQ99856 593 aa9.55□□□□□ -0.88
LINC01040-201ENST00000425048 MBNL3Q9NUK0 354 aaKnown RBP9.55□□□□□ -0.88
LINC01040-201ENST00000425048 DCTN4Q9UJW0 460 aa9.55□□□□□ -0.88
LINC01040-201ENST00000425048 CEACAM5P06731 702 aa9.54□□□□□ -0.88
LINC01040-201ENST00000425048 TOP6BLQ8N6T0 577 aa9.54□□□□□ -0.88
LINC01040-201ENST00000425048 GPBAR1Q8TDU6 330 aa9.54□□□□□ -0.88
LINC01040-201ENST00000425048 ACSBG1Q96GR2 724 aa9.54□□□□□ -0.88
LINC01040-201ENST00000425048 CBX8Q9HC52 389 aa9.54□□□□□ -0.88
LINC01040-201ENST00000425048 BIN2Q9UBW5 565 aaPredicted RBP9.54□□□□□ -0.88
LINC01040-201ENST00000425048 PLAGL2Q9UPG8 496 aa9.54□□□□□ -0.88
LINC01040-201ENST00000425048 SNX11Q9Y5W9 270 aa9.54□□□□□ -0.88
LINC01040-201ENST00000425048 U3KQE9 123 aa9.54□□□□□ -0.88
LINC01040-201ENST00000425048 CARMIL2Q6F5E8 1435 aa9.54□□□□□ -0.88
LINC01040-201ENST00000425048 CD96P40200 585 aa9.53□□□□□ -0.88
LINC01040-201ENST00000425048 ZNF252P-AS1Q0IIN9 211 aa9.52□□□□□ -0.89
LINC01040-201ENST00000425048 DSC3Q14574 896 aa9.52□□□□□ -0.89
LINC01040-201ENST00000425048 ADAMTS6Q9UKP5 1117 aa9.52□□□□□ -0.89
LINC01040-201ENST00000425048 SAMM50Q9Y512 469 aa9.52□□□□□ -0.89
LINC01040-201ENST00000425048 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.52□□□□□ -0.89
LINC01040-201ENST00000425048 PNMA6FA0A0J9YX94 578 aa9.51□□□□□ -0.89
LINC01040-201ENST00000425048 ANGEL2Q5VTE6 544 aaKnown RBP9.51□□□□□ -0.89
LINC01040-201ENST00000425048 TMEM40Q8WWA1 233 aa9.51□□□□□ -0.89
LINC01040-201ENST00000425048 FAM168AQ92567 244 aa9.51□□□□□ -0.89
LINC01040-201ENST00000425048 NECAB3Q96P71 396 aaPredicted RBP9.51□□□□□ -0.89
LINC01040-201ENST00000425048 CACNA2D2Q9NY47 1150 aa9.51□□□□□ -0.89
LINC01040-201ENST00000425048 GTF2IRD1Q9UHL9 959 aa9.51□□□□□ -0.89
LINC01040-201ENST00000425048 ENOX2Q16206 610 aaKnown RBP9.5□□□□□ -0.89
LINC01040-201ENST00000425048 ZNF648Q5T619 568 aaPredicted RBP9.5□□□□□ -0.89
LINC01040-201ENST00000425048 LRRN4CLQ8ND94 238 aa9.5□□□□□ -0.89
LINC01040-201ENST00000425048 HEXIM2Q96MH2 286 aaKnown RBP9.5□□□□□ -0.89
LINC01040-201ENST00000425048 CEP44Q9C0F1 390 aa9.5□□□□□ -0.89
LINC01040-201ENST00000425048 TNKS2Q9H2K2 1166 aa9.5□□□□□ -0.89
LINC01040-201ENST00000425048 IGF2BP3O00425 579 aaKnown RBP eCLIP9.49□□□□□ -0.89
LINC01040-201ENST00000425048 TREHO43280 583 aa9.49□□□□□ -0.89
LINC01040-201ENST00000425048 FARP2O94887 1054 aaPredicted RBP9.49□□□□□ -0.89
LINC01040-201ENST00000425048 ITIH2P19823 946 aa9.49□□□□□ -0.89
LINC01040-201ENST00000425048 SLC23A3Q6PIS1 610 aa9.49□□□□□ -0.89
LINC01040-201ENST00000425048 FAM214BQ7L5A3 538 aa9.49□□□□□ -0.89
LINC01040-201ENST00000425048 PICK1Q9NRD5 415 aa9.49□□□□□ -0.89
LINC01040-201ENST00000425048 CSADQ9Y600 493 aa9.49□□□□□ -0.89
LINC01040-201ENST00000425048 BMP6P22004 513 aa9.48□□□□□ -0.89
LINC01040-201ENST00000425048 GSTT1P30711 240 aa9.48□□□□□ -0.89
LINC01040-201ENST00000425048 PPM1JQ5JR12 505 aa9.48□□□□□ -0.89
LINC01040-201ENST00000425048 MPRIPQ6WCQ1 1025 aa9.48□□□□□ -0.89
LINC01040-201ENST00000425048 C3orf58Q8NDZ4 430 aa9.48□□□□□ -0.89
LINC01040-201ENST00000425048 GRIN3AQ8TCU5 1115 aa9.48□□□□□ -0.89
LINC01040-201ENST00000425048 ASB11Q8WXH4 323 aa9.48□□□□□ -0.89
LINC01040-201ENST00000425048 SRCIN1Q9C0H9 1055 aa9.48□□□□□ -0.89
LINC01040-201ENST00000425048 PRDM10Q9NQV6 1147 aa9.48□□□□□ -0.89
LINC01040-201ENST00000425048 GNEQ9Y223 722 aaKnown RBP9.48□□□□□ -0.89
LINC01040-201ENST00000425048 TRIM37O94972 964 aa9.47□□□□□ -0.89
LINC01040-201ENST00000425048 MAPK1P28482 360 aa9.47□□□□□ -0.89
LINC01040-201ENST00000425048 DCDC2CA8MYV0 355 aa9.46□□□□□ -0.9
LINC01040-201ENST00000425048 FANCGO15287 622 aa9.46□□□□□ -0.9
LINC01040-201ENST00000425048 LRRC14Q15048 493 aa9.46□□□□□ -0.9
LINC01040-201ENST00000425048 TPTE2Q6XPS3 522 aa9.46□□□□□ -0.9
LINC01040-201ENST00000425048 CDC37L1Q7L3B6 337 aa9.46□□□□□ -0.9
LINC01040-201ENST00000425048 C12orf40Q86WS4 652 aa9.46□□□□□ -0.9
LINC01040-201ENST00000425048 ENC1O14682 589 aa9.45□□□□□ -0.9
LINC01040-201ENST00000425048 RING1Q06587 406 aa9.45□□□□□ -0.9
LINC01040-201ENST00000425048 LCE1DQ5T752 114 aa9.45□□□□□ -0.9
LINC01040-201ENST00000425048 KCT2Q8NC54 265 aa9.45□□□□□ -0.9
LINC01040-201ENST00000425048 FBF1Q8TES7 1133 aa9.45□□□□□ -0.9
LINC01040-201ENST00000425048 PPM1HQ9ULR3 514 aa9.45□□□□□ -0.9
LINC01040-201ENST00000425048 GIPC1O14908 333 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms